Build log

elph-1.0.1:20100807-234851.log (text/plain), 9.16 KB, created by Diego Elio Pettenò (RETIRED) on 2010-08-09 16:46:30 UTC

 * CPV:  sci-biology/elph-1.0.1
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking ELPH-1.0.1.tar.gz to /var/tmp/portage/sci-biology/elph-1.0.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/elph-1.0.1/work
>>> Compiling source in /var/tmp/portage/sci-biology/elph-1.0.1/work/ELPH/sources ...
make -j14 
i686-pc-linux-gnu-g++ -Wall -I- -I. -fno-exceptions -fno-rtti -D_REENTRANT -O2 -pipe -c elph.cc -o elph.o
i686-pc-linux-gnu-g++ -Wall -I- -I. -fno-exceptions -fno-rtti -D_REENTRANT -O2 -pipe -c motif.cc -o motif.o
i686-pc-linux-gnu-g++ -Wall -I- -I. -fno-exceptions -fno-rtti -D_REENTRANT -O2 -pipe -c GBase.cpp -o GBase.o
i686-pc-linux-gnu-g++ -Wall -I- -I. -fno-exceptions -fno-rtti -D_REENTRANT -O2 -pipe -c GString.cpp -o GString.o
i686-pc-linux-gnu-g++ -Wall -I- -I. -fno-exceptions -fno-rtti -D_REENTRANT -O2 -pipe -c GArgs.cpp -o GArgs.o
cc1plus: note: obsolete option -I- used, please use -iquote instead
cc1plus: note: obsolete option -I- used, please use -iquote instead
cc1plus: note: obsolete option -I- used, please use -iquote instead
cc1plus: note: obsolete option -I- used, please use -iquote instead
cc1plus: note: obsolete option -I- used, please use -iquote instead
In file included from ./GString.h:8:0,
                 from elph.cc:5:
./GBase.h: In function ‘void swap(int&, int&)’:
./GBase.h:94:30: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned int&, unsigned int&)’:
./GBase.h:98:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short int&, short int&)’:
./GBase.h:101:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short unsigned int&, short unsigned int&)’:
./GBase.h:104:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long int&, long int&)’:
./GBase.h:107:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long unsigned int&, long unsigned int&)’:
./GBase.h:110:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(char&, char&)’:
./GBase.h:113:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned char&, unsigned char&)’:
./GBase.h:116:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(bool&, bool&)’:
./GBase.h:119:31: warning: operation on ‘arg1’ may be undefined
In file included from GBase.cpp:5:0:
./GBase.h: In function ‘void swap(int&, int&)’:
./GBase.h:94:30: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned int&, unsigned int&)’:
./GBase.h:98:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short int&, short int&)’:
./GBase.h:101:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short unsigned int&, short unsigned int&)’:
./GBase.h:104:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long int&, long int&)’:
./GBase.h:107:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long unsigned int&, long unsigned int&)’:
./GBase.h:110:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(char&, char&)’:
./GBase.h:113:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned char&, unsigned char&)’:
./GBase.h:116:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(bool&, bool&)’:
./GBase.h:119:31: warning: operation on ‘arg1’ may be undefined
elph.cc: In function ‘int main(int, char**)’:
elph.cc:81:76: warning: deprecated conversion from string constant to ‘char*’
In file included from ./GFastaFile.h:3:0,
                 from ./motif.h:8,
                 from motif.cc:4:
./GBase.h: In function ‘void swap(int&, int&)’:
./GBase.h:94:30: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned int&, unsigned int&)’:
./GBase.h:98:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short int&, short int&)’:
./GBase.h:101:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short unsigned int&, short unsigned int&)’:
./GBase.h:104:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long int&, long int&)’:
./GBase.h:107:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long unsigned int&, long unsigned int&)’:
./GBase.h:110:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(char&, char&)’:
./GBase.h:113:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned char&, unsigned char&)’:
./GBase.h:116:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(bool&, bool&)’:
./GBase.h:119:31: warning: operation on ‘arg1’ may be undefined
elph.cc: In function ‘seqType Process_Options(GArgs*)’:
elph.cc:178:28: warning: ignoring return value of ‘int scanf(const char*, ...)’, declared with attribute warn_unused_result
In file included from ./GString.h:8:0,
                 from GString.cpp:2:
./GBase.h: In function ‘void swap(int&, int&)’:
./GBase.h:94:30: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned int&, unsigned int&)’:
./GBase.h:98:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short int&, short int&)’:
./GBase.h:101:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short unsigned int&, short unsigned int&)’:
./GBase.h:104:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long int&, long int&)’:
./GBase.h:107:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long unsigned int&, long unsigned int&)’:
./GBase.h:110:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(char&, char&)’:
./GBase.h:113:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned char&, unsigned char&)’:
./GBase.h:116:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(bool&, bool&)’:
./GBase.h:119:31: warning: operation on ‘arg1’ may be undefined
elph.cc: In function ‘int main(int, char**)’:
elph.cc:134:58: warning: ‘info’ may be used uninitialized in this function
In file included from GArgs.cpp:7:0:
./GBase.h: In function ‘void swap(int&, int&)’:
./GBase.h:94:30: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned int&, unsigned int&)’:
./GBase.h:98:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short int&, short int&)’:
./GBase.h:101:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(short unsigned int&, short unsigned int&)’:
./GBase.h:104:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(long int&, long int&)’:
./GBase.h:107:31: warning: operation on ‘arg1’ may be undefined
motif.cc: In constructor ‘Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)’:
motif.cc:908:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
./GBase.h: In function ‘void swap(long unsigned int&, long unsigned int&)’:
./GBase.h:110:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(char&, char&)’:
./GBase.h:113:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(unsigned char&, unsigned char&)’:
./GBase.h:116:31: warning: operation on ‘arg1’ may be undefined
./GBase.h: In function ‘void swap(bool&, bool&)’:
./GBase.h:119:31: warning: operation on ‘arg1’ may be undefined
motif.cc: In member function ‘double Motif::findMDet(int)’:
motif.cc:1187:12: warning: ‘maxinfo’ may be used uninitialized in this function
motif.cc: In member function ‘double Motif::optimize(double, double, int)’:
motif.cc:1656:10: warning: ‘probMotif’ may be used uninitialized in this function
motif.cc: In constructor ‘Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)’:
motif.cc:1045:51: warning: ‘info’ may be used uninitialized in this function
i686-pc-linux-gnu-g++  -o elph elph.o motif.o GBase.o GString.o GArgs.o 
>>> Source compiled.
>>> Test phase [none]: sci-biology/elph-1.0.1

>>> Install elph-1.0.1 into /var/tmp/portage/sci-biology/elph-1.0.1/image/ category sci-biology
>>> Completed installing elph-1.0.1 into /var/tmp/portage/sci-biology/elph-1.0.1/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/elph

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/elph