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Gentoo's Bugzilla – Attachment 241069 Details for
Bug 311847
sci-biology/staden-2.0.0: version bump
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ax_lib_samtools.m4.patch
ax_lib_samtools.m4.patch (text/plain), 1.45 KB, created by
Martin Mokrejš
on 2010-08-02 13:08:27 UTC
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Description:
ax_lib_samtools.m4.patch
Filename:
MIME Type:
Creator:
Martin Mokrejš
Created:
2010-08-02 13:08:27 UTC
Size:
1.45 KB
patch
obsolete
>--- staden/trunk/src/ac_stubs/ax_lib_samtools.m4 2010/01/14 12:14:01 1949 >+++ staden/trunk/src/ac_stubs/ax_lib_samtools.m4 2010/08/02 09:20:59 2190 >@@ -117,7 +117,8 @@ > if test "x$SAMTOOLS_ROOT" == "x" > then > samtools_exe=samtools >- elseif test -x "$SAMTOOLS_ROOT/bin/samtools" >+ elif test -x "$SAMTOOLS_ROOT/bin/samtools" >+ then > samtools_exe="$SAMTOOLS_ROOT/bin/samtools" > else > samtools_exe="$SAMTOOLS_ROOT/samtools" >--- staden/trunk/src/ac_stubs/ax_lib_samtools.m4 2010/08/02 09:20:59 2190 >+++ staden/trunk/src/ac_stubs/ax_lib_samtools.m4 2010/08/02 11:12:53 2192 >@@ -6,7 +6,7 @@ > # > # This macro will check for the existence of samtools 'bam' library. > # (http://samtools.sourceforge.net/). It does this by checking for the >-# header file ibam.h and the bam library object file. These are >+# header file bam.h and the bam library object file. These are > # initially searched for in the include and lib subdirectory of the > # --with-samtools=DIR, and if not found there directly within DIR > # itself. This allows for --with-samtools to be specified as either >--- staden/trunk/src/ac_stubs/ax_lib_samtools.m4 2010/08/02 11:12:53 2192 >+++ staden/trunk/src/ac_stubs/ax_lib_samtools.m4 2010/08/02 11:23:16 2193 >@@ -99,7 +99,7 @@ > > if test "$samtools_ok" = "yes" > then >- SAMTOOLS_LDFLAGS="$ZLIB_LDFLAGS" >+ SAMTOOLS_LDFLAGS="-lbam $ZLIB_LDFLAGS" > SAMTOOLS_CFLAGS= > fi > fi
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bug 311847
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