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Gentoo's Bugzilla – Attachment 241039 Details for
Bug 311857
[science overlay] sci-biology/samtools: new package
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samtools-0.1.7a.ebuild
samtools-0.1.7a.ebuild (text/plain), 1.18 KB, created by
Martin Mokrejš
on 2010-08-02 10:14:18 UTC
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Description:
samtools-0.1.7a.ebuild
Filename:
MIME Type:
Creator:
Martin Mokrejš
Created:
2010-08-02 10:14:18 UTC
Size:
1.18 KB
patch
obsolete
># Copyright 1999-2010 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: $ > >EAPI=3 > >DESCRIPTION="SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format." >HOMEPAGE="http://samtools.sourceforge.net/" >SRC_URI="http://downloads.sourceforge.net/project/samtools/samtools/0.1.7/samtools-0.1.7a.tar.bz2" > >LICENSE="MIT" >SLOT="0" >KEYWORDS="~x86 ~amd64" >IUSE="zlib" > >DEPEND="sys-libs/zlib > sys-libs/ncurses" >RDEPEND="${DEPEND}" > >src_unpack() { > unpack ${A} > sed -i -e "s/-g -Wall -O2/${CFLAGS}/" "${S}"/Makefile || die > sed -i -e "s/-g -Wall -O2/${CFLAGS}/" "${S}"/misc/Makefile || die >} > > >src_compile(){ > emake > emake razip >} > >src_install(){ > dobin razip samtools > for f in md5sum-lite md5fa maq2sam-short maq2sam-long wgsim; do > dobin misc/$f > done > > for f in misc/*.pl; do > dobin $f > done > > dolib libbam.a > > insinto /usr/include > doins bam.h bgzf.h sam.h sam_header.h faidx.h bam_maqcns.h glf.h > > mv samtools.txt samtools.1 > doman samtools.1 >}
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bug 311857
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225611
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225613
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241063