Build log

pytables-2.2:20100714-032540.log (text/plain), 75.59 KB, created by Diego Elio Pettenò (RETIRED) on 2010-07-14 07:15:16 UTC

 * CPV:  dev-python/pytables-2.2
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking tables-2.2.tar.gz to /var/tmp/portage/dev-python/pytables-2.2/work
>>> Source unpacked in /var/tmp/portage/dev-python/pytables-2.2/work
>>> Preparing source in /var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2 ...
 * Building of dev-python/pytables-2.2 with CPython 2.7...
python2.7 setup.py build -b build-2.7
* Found numpy 1.4.1 package installed.
* Found numexpr 1.3.1 package installed.
* Found HDF5 headers at ``/usr/include``, library at ``/usr/lib``.
* Found LZO 2 headers at ``/usr/include``, library at ``/usr/lib``.
* Skipping detection of LZO 1 since LZO 2 has already been found.
* Found bzip2 headers at ``/usr/include``, library at ``/lib``.
* Found pthreads headers at ``/usr/include``, library at ``/usr/lib``.
[39mrunning build[0m
[39mrunning build_py[0m
[39mcreating build-2.7[0m
[39mcreating build-2.7/lib.linux-i686-2.7[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/utils.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/carray.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/registry.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/array.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/parameters.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/file.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/leaf.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/group.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/expression.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/undoredo.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/earray.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/link.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/_conditions_common.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/_table_common.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/filters.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/vlarray.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/description.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/conditions.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/attributeset.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/atom.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/table.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/exceptions.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/unimplemented.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/path.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/__init__.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/node.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/_parameters_common.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcopying tables/flavor.py -> build-2.7/lib.linux-i686-2.7/tables[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/nodes[0m
[39mcopying tables/nodes/filenode.py -> build-2.7/lib.linux-i686-2.7/tables/nodes[0m
[39mcopying tables/nodes/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/nodes[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/scripts[0m
[39mcopying tables/scripts/ptdump.py -> build-2.7/lib.linux-i686-2.7/tables/scripts[0m
[39mcopying tables/scripts/ptrepack.py -> build-2.7/lib.linux-i686-2.7/tables/scripts[0m
[39mcopying tables/scripts/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/scripts[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/nra[0m
[39mcopying tables/nra/attributeaccess.py -> build-2.7/lib.linux-i686-2.7/tables/nra[0m
[39mcopying tables/nra/nestedrecords.py -> build-2.7/lib.linux-i686-2.7/tables/nra[0m
[39mcopying tables/nra/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/nra[0m
[39mcopying tables/nra/nriterators.py -> build-2.7/lib.linux-i686-2.7/tables/nra[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/netcdf3[0m
[39mcopying tables/netcdf3/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/netcdf3[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/netcdf3/scripts[0m
[39mcopying tables/netcdf3/scripts/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/netcdf3/scripts[0m
[39mcopying tables/netcdf3/scripts/nctoh5.py -> build-2.7/lib.linux-i686-2.7/tables/netcdf3/scripts[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/misc[0m
[39mcopying tables/misc/proxydict.py -> build-2.7/lib.linux-i686-2.7/tables/misc[0m
[39mcopying tables/misc/lrucache.py -> build-2.7/lib.linux-i686-2.7/tables/misc[0m
[39mcopying tables/misc/enum.py -> build-2.7/lib.linux-i686-2.7/tables/misc[0m
[39mcopying tables/misc/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/misc[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_tree.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_timetype.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_numarray.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_backcompat.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_lists.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_hdf5compat.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_numpy.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_earray.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_index_backcompat.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_basics.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_enum.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_array.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_tables.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_types.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_all.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_carray.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_tablesMD.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_Numeric.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_do_undo.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_attributes.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_garbage.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/check_leaks.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/common.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_create.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_vlarray.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_links.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_nestedtypes.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_expression.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_queries.py -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/nodes/tests[0m
[39mcopying tables/nodes/tests/test_filenode.py -> build-2.7/lib.linux-i686-2.7/tables/nodes/tests[0m
[39mcopying tables/nodes/tests/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/nodes/tests[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/netcdf3/tests[0m
[39mcopying tables/netcdf3/tests/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/netcdf3/tests[0m
[39mcopying tables/netcdf3/tests/test_netcdf3.py -> build-2.7/lib.linux-i686-2.7/tables/netcdf3/tests[0m
[39mcreating build-2.7/lib.linux-i686-2.7/tables/nra/tests[0m
[39mcopying tables/nra/tests/test_nestedrecords.py -> build-2.7/lib.linux-i686-2.7/tables/nra/tests[0m
[39mcopying tables/nra/tests/test_nriterators.py -> build-2.7/lib.linux-i686-2.7/tables/nra/tests[0m
[39mcopying tables/nra/tests/__init__.py -> build-2.7/lib.linux-i686-2.7/tables/nra/tests[0m
[39mcopying tables/tests/attr-u16.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/idx-std-1.x.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/Tables_lzo2_shuffle.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_compound_chunked.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/elink2.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/zerodim-attrs-1.4.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_i64be.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/slink.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/array_mdatom.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_i32le.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/zerodim-attrs-1.3.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_f64be.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/time-table-vlarray-1_x.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_i32be.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_enum.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/test_szip.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_SDSextendible.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/flavored_vlarrays-format1.6.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_i64le.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/times-nested-be.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/Tables_lzo1.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/blosc_bigendian.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/elink.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_unsupptype.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/ex-noattr.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/Tables_lzo1_shuffle.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/non-chunked-table.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/smpl_f64le.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/indexes_2_0.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/vlunicode_endian.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/nested-type-with-gaps.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/tests/Tables_lzo2.h5 -> build-2.7/lib.linux-i686-2.7/tables/tests[0m
[39mcopying tables/nodes/tests/test_filenode.dat -> build-2.7/lib.linux-i686-2.7/tables/nodes/tests[0m
[39mcopying tables/nodes/tests/test_filenode.xbm -> build-2.7/lib.linux-i686-2.7/tables/nodes/tests[0m
[39mcopying tables/nodes/tests/test_filenode_v1.h5 -> build-2.7/lib.linux-i686-2.7/tables/nodes/tests[0m
[31mwarning: build_py: byte-compiling is disabled, skipping.
[0m
[39mrunning build_ext[0m
[39mcythoning tables/utilsExtension.pyx to tables/utilsExtension.c[0m
[39mbuilding 'tables.utilsExtension' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcreating build-2.7/temp.linux-i686-2.7[0m
[39mcreating build-2.7/temp.linux-i686-2.7/tables[0m
[39mcreating build-2.7/temp.linux-i686-2.7/src[0m
[39mcreating build-2.7/temp.linux-i686-2.7/blosc[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: tables/utilsExtension.c[0m
[39mi686-pc-linux-gnu-gcc: src/H5ARRAY.c[0m
In file included from /usr/include/python2.7/Python.h:8:0,
                 from src/utils.h:1,
                 from src/H5ARRAY.c:4:
/usr/include/python2.7/pyconfig.h:1149:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:210:0: note: this is the location of the previous definition
[39mi686-pc-linux-gnu-gcc: blosc/blosc.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/shuffle.c[0m
[39mi686-pc-linux-gnu-gcc: src/H5ATTR.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/blosclz.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/blosc_filter.c[0m
[39mi686-pc-linux-gnu-gcc: src/utils.c[0m
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/utilsExtension.o build-2.7/temp.linux-i686-2.7/src/utils.o build-2.7/temp.linux-i686-2.7/src/H5ARRAY.o build-2.7/temp.linux-i686-2.7/src/H5ATTR.o build-2.7/temp.linux-i686-2.7/blosc/blosc.o build-2.7/temp.linux-i686-2.7/blosc/blosclz.o build-2.7/temp.linux-i686-2.7/blosc/shuffle.o build-2.7/temp.linux-i686-2.7/blosc/blosc_filter.o -L/usr/lib -lhdf5 -lpthread -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/utilsExtension.so[0m
[39mcythoning tables/hdf5Extension.pyx to tables/hdf5Extension.c[0m
[39mbuilding 'tables.hdf5Extension' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: src/H5VLARRAY.c[0m
In file included from /usr/include/python2.7/Python.h:8:0,
                 from src/utils.h:1,
                 from src/H5VLARRAY.c:3:
/usr/include/python2.7/pyconfig.h:1149:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:210:0: note: this is the location of the previous definition
[39mi686-pc-linux-gnu-gcc: blosc/blosclz.c[0m
[39mi686-pc-linux-gnu-gcc: src/H5ATTR.c[0m
[39mi686-pc-linux-gnu-gcc: src/H5ARRAY-opt.c[0m
[39mi686-pc-linux-gnu-gcc: src/typeconv.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/blosc.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/blosc_filter.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/shuffle.c[0m
[39mi686-pc-linux-gnu-gcc: tables/hdf5Extension.c[0m
[39mi686-pc-linux-gnu-gcc: src/utils.c[0m
[39mi686-pc-linux-gnu-gcc: src/H5ARRAY.c[0m
In file included from /usr/include/python2.7/Python.h:8:0,
                 from src/utils.h:1,
                 from src/H5ARRAY.c:4:
/usr/include/python2.7/pyconfig.h:1149:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:210:0: note: this is the location of the previous definition
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/hdf5Extension.o build-2.7/temp.linux-i686-2.7/src/utils.o build-2.7/temp.linux-i686-2.7/src/typeconv.o build-2.7/temp.linux-i686-2.7/src/H5ARRAY.o build-2.7/temp.linux-i686-2.7/src/H5ARRAY-opt.o build-2.7/temp.linux-i686-2.7/src/H5VLARRAY.o build-2.7/temp.linux-i686-2.7/src/H5ATTR.o build-2.7/temp.linux-i686-2.7/blosc/blosc.o build-2.7/temp.linux-i686-2.7/blosc/blosclz.o build-2.7/temp.linux-i686-2.7/blosc/shuffle.o build-2.7/temp.linux-i686-2.7/blosc/blosc_filter.o -L/usr/lib -lhdf5 -lpthread -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/hdf5Extension.so[0m
[39mcythoning tables/tableExtension.pyx to tables/tableExtension.c[0m
[39mbuilding 'tables.tableExtension' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: src/H5TB-opt.c[0m
In file included from /usr/include/python2.7/Python.h:8:0,
                 from src/utils.h:1,
                 from src/H5TB-opt.c:36:
/usr/include/python2.7/pyconfig.h:1149:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:210:0: note: this is the location of the previous definition
src/H5TB-opt.c: In function ‘H5TBOread_elements’:
src/H5TB-opt.c:308:2: warning: passing argument 4 of ‘H5Sselect_elements’ from incompatible pointer type
/usr/include/H5Spublic.h:128:15: note: expected ‘const hsize_t *’ but argument is of type ‘const hsize_t **’
src/H5TB-opt.c: In function ‘H5TBOwrite_elements’:
src/H5TB-opt.c:517:2: warning: passing argument 4 of ‘H5Sselect_elements’ from incompatible pointer type
/usr/include/H5Spublic.h:128:15: note: expected ‘const hsize_t *’ but argument is of type ‘const hsize_t **’
[39mi686-pc-linux-gnu-gcc: blosc/blosclz.c[0m
[39mi686-pc-linux-gnu-gcc: src/H5ATTR.c[0m
[39mi686-pc-linux-gnu-gcc: src/typeconv.c[0m
[39mi686-pc-linux-gnu-gcc: tables/tableExtension.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/blosc.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/blosc_filter.c[0m
[39mi686-pc-linux-gnu-gcc: blosc/shuffle.c[0m
[39mi686-pc-linux-gnu-gcc: src/utils.c[0m
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/tableExtension.o build-2.7/temp.linux-i686-2.7/src/utils.o build-2.7/temp.linux-i686-2.7/src/typeconv.o build-2.7/temp.linux-i686-2.7/src/H5TB-opt.o build-2.7/temp.linux-i686-2.7/src/H5ATTR.o build-2.7/temp.linux-i686-2.7/blosc/blosc.o build-2.7/temp.linux-i686-2.7/blosc/blosclz.o build-2.7/temp.linux-i686-2.7/blosc/shuffle.o build-2.7/temp.linux-i686-2.7/blosc/blosc_filter.o -L/usr/lib -lhdf5 -lpthread -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/tableExtension.so[0m
[39mcythoning tables/_comp_lzo.pyx to tables/_comp_lzo.c[0m
[39mbuilding 'tables._comp_lzo' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: src/H5Zlzo.c[0m
[39mi686-pc-linux-gnu-gcc: tables/_comp_lzo.c[0m
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/_comp_lzo.o build-2.7/temp.linux-i686-2.7/src/H5Zlzo.o -L/usr/lib -lhdf5 -llzo2 -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/_comp_lzo.so[0m
[39mcythoning tables/_comp_bzip2.pyx to tables/_comp_bzip2.c[0m
[39mbuilding 'tables._comp_bzip2' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: src/H5Zbzip2.c[0m
[39mi686-pc-linux-gnu-gcc: tables/_comp_bzip2.c[0m
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/_comp_bzip2.o build-2.7/temp.linux-i686-2.7/src/H5Zbzip2.o -L/usr/lib -lhdf5 -lbz2 -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/_comp_bzip2.so[0m
[39mcythoning tables/linkExtension.pyx to tables/linkExtension.c[0m
[39mbuilding 'tables.linkExtension' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: tables/linkExtension.c[0m
tables/linkExtension.c: In function ‘__pyx_pf_6tables_13linkExtension_12ExternalLink__g_open’:
tables/linkExtension.c:1853:3: warning: passing argument 4 of ‘H5Lunpack_elink_val’ from incompatible pointer type
/usr/include/H5Lpublic.h:193:15: note: expected ‘const char **’ but argument is of type ‘char **’
tables/linkExtension.c:1853:3: warning: passing argument 5 of ‘H5Lunpack_elink_val’ from incompatible pointer type
/usr/include/H5Lpublic.h:193:15: note: expected ‘const char **’ but argument is of type ‘char **’
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/linkExtension.o -L/usr/lib -lhdf5 -lpthread -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/linkExtension.so[0m
[39mrunning build_scripts[0m
[39mcreating build-2.7/scripts-2.7[0m
[39mcopying and adjusting utils/ptdump -> build-2.7/scripts-2.7[0m
[39mcopying and adjusting utils/ptrepack -> build-2.7/scripts-2.7[0m
[39mcopying and adjusting utils/nctoh5 -> build-2.7/scripts-2.7[0m
[39mchanging mode of build-2.7/scripts-2.7/ptdump from 644 to 755[0m
[39mchanging mode of build-2.7/scripts-2.7/ptrepack from 644 to 755[0m
[39mchanging mode of build-2.7/scripts-2.7/nctoh5 from 644 to 755[0m
>>> Source compiled.
 * Testing of dev-python/pytables-2.2 with CPython 2.7...
Problems initializing LZO library
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version:  2.2
HDF5 version:      1.8.5
NumPy version:     1.4.1
Numexpr version:   1.3.1 (not using Intel's VML/MKL)
Zlib version:      1.2.5 (in Python interpreter)
BZIP2 version:     1.0.5 (10-Dec-2007)
Blosc version:     1.0 (2010-07-01)
Python version:    2.7 (r27:82500, Jul  5 2010, 18:24:57) 
[GCC 4.5.0]
Platform:          linux2-i686
Byte-ordering:     little
Detected cores:    8
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Performing only a light (yet comprehensive) subset of the test suite.
If you want a more complete test, try passing the --heavy flag to this script
(or set the 'heavy' parameter in case you are using tables.test() call).
The whole suite will take more than 2 minutes to complete on a relatively
modern CPU and around 80 MB of main memory.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/filters.py:264: FiltersWarning: compression library ``lzo`` is not available; using ``zlib`` instead
  % (complib, default_complib), FiltersWarning )
......................................................................................................................................................................................................................................................................................................................................................................................HDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
EHDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 331 in H5O_dtype_decode_helper(): unable to decode member type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
EHDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 331 in H5O_dtype_decode_helper(): unable to decode member type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
E.......................................................................HDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 331 in H5O_dtype_decode_helper(): unable to decode member type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
EHDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 496 in H5O_dtype_decode_helper(): unable to decode VL parent type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
E...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 331 in H5O_dtype_decode_helper(): unable to decode member type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
EHDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 331 in H5O_dtype_decode_helper(): unable to decode member type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
EHDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
  #000: H5Ddeprec.c line 242 in H5Dopen1(): can't open dataset
    major: Dataset
    minor: Unable to initialize object
  #001: H5Dint.c line 1133 in H5D_open(): not found
    major: Dataset
    minor: Object not found
  #002: H5Dint.c line 1223 in H5D_open_oid(): unable to load type info from dataset header
    major: Dataset
    minor: Unable to initialize object
  #003: H5Omessage.c line 484 in H5O_msg_read(): unable to read object header message
    major: Object header
    minor: Read failed
  #004: H5Omessage.c line 545 in H5O_msg_read_oh(): unable to decode message
    major: Object header
    minor: Unable to decode value
  #005: H5Oshared.h line 85 in H5O_dtype_shared_decode(): unable to decode native message
    major: Object header
    minor: Unable to decode value
  #006: H5Odtype.c line 1100 in H5O_dtype_decode(): can't decode type
    major: Datatype
    minor: Unable to decode value
  #007: H5Odtype.c line 331 in H5O_dtype_decode_helper(): unable to decode member type
    major: Datatype
    minor: Unable to decode value
  #008: H5Odtype.c line 545 in H5O_dtype_decode_helper(): incorrect array datatype version
    major: Datatype
    minor: Wrong version number
E........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
======================================================================
ERROR: None (tables.tests.test_basics.CheckFileTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_basics.py", line 1562, in test04_openGenericHDF5File
    ui = fileh.getNode(columns, "pressure", classname="Array")
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1091, in getNode
    node = self._getNode(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/columns/pressure`` under ``/``

======================================================================
ERROR: None (tables.tests.test_basics.CheckFileTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_basics.py", line 1586, in test04b_UnImplementedOnLoading
    UserWarning, h5file.getNode, '/CompoundChunked')
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 374, in failUnlessWarns
    ret = callableObj(*args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1091, in getNode
    node = self._getNode(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/CompoundChunked`` under ``/``

======================================================================
ERROR: None (tables.tests.test_basics.CheckFileTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_basics.py", line 1597, in test05_copyUnimplemented
    UserWarning, fileh.getNode, '/CompoundChunked')
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 374, in failUnlessWarns
    ret = callableObj(*args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1091, in getNode
    node = self._getNode(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/CompoundChunked`` under ``/``

======================================================================
ERROR: test00_table (tables.tests.test_backcompat.TimeTestCase)
Checking backward compatibility with old TimeXX types (tables).
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_backcompat.py", line 135, in test00_table
    table = self.fileh.root.table
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 834, in __getattr__
    return self._f_getChild(name)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 708, in _f_getChild
    return self._v_file._getNode(childPath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/table`` under ``/``

======================================================================
ERROR: test01_vlarray (tables.tests.test_backcompat.TimeTestCase)
Checking backward compatibility with old TimeXX types (vlarrays).
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_backcompat.py", line 142, in test01_vlarray
    vlarray4 = self.fileh.root.vlarray4
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 834, in __getattr__
    return self._f_getChild(name)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 708, in _f_getChild
    return self._v_file._getNode(childPath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/vlarray4`` under ``/``

======================================================================
ERROR: test (tables.tests.test_hdf5compat.ChunkedCompoundTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py", line 45, in test
    self._test()
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py", line 153, in _test
    self.assert_('/CompoundChunked' in self.h5file)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1449, in __contains__
    self.getNode(path)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1091, in getNode
    node = self._getNode(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/CompoundChunked`` under ``/``

======================================================================
ERROR: test (tables.tests.test_hdf5compat.ContiguousCompoundTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py", line 45, in test
    self._test()
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py", line 208, in _test
    self.assert_('/test_var/structure variable' in self.h5file)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1449, in __contains__
    self.getNode(path)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1091, in getNode
    node = self._getNode(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/test_var/structure variable`` under ``/``

======================================================================
ERROR: test (tables.tests.test_hdf5compat.ContiguousCompoundAppendTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/common.py", line 248, in newmethod
    return oldmethod(self, *args, **kwargs)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py", line 45, in test
    self._test()
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py", line 248, in _test
    self.assert_('/test_var/structure variable' in self.h5file)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1449, in __contains__
    self.getNode(path)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1091, in getNode
    node = self._getNode(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/file.py", line 1035, in _getNode
    node = self.root._g_loadChild(nodePath)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 1204, in _g_loadChild
    childClass = self._g_getChildLeafClass(childName, warn=True)
  File "/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/group.py", line 363, in _g_getChildLeafClass
    childCID = self._g_getLChildAttr(childName, 'CLASS')
  File "hdf5Extension.pyx", line 681, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:5890)
HDF5ExtError: Non-existing node ``/test_var/structure variable`` under ``/``

----------------------------------------------------------------------
Ran 2944 tests in 71.436s

FAILED (errors=8)
Closing remaining open files: /var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/smpl_unsupptype.h5... done /var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2/build-2.7/lib.linux-i686-2.7/tables/tests/ex-noattr.h5... done
 * ERROR: dev-python/pytables-2.2 failed:
 *   Testing failed with CPython 2.7 in testing() function
 * 
 * Call stack:
 *     ebuild.sh, line   54:  Called src_test
 *   environment, line 4816:  Called python_execute_function 'testing'
 *   environment, line 3562:  Called die
 * The specific snippet of code:
 *                       die "${failure_message}";
 * 
 * If you need support, post the output of 'emerge --info =dev-python/pytables-2.2',
 * the complete build log and the output of 'emerge -pqv =dev-python/pytables-2.2'.
 * The complete build log is located at '/var/log/portage/build/dev-python/pytables-2.2:20100714-032540.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-python/pytables-2.2/temp/environment'.
 * S: '/var/tmp/portage/dev-python/pytables-2.2/work/tables-2.2'

>>> Install pytables-2.2 into /var/tmp/portage/dev-python/pytables-2.2/image/ category dev-python
 * Installation of dev-python/pytables-2.2 with CPython 2.7...
python2.7 setup.py build -b build-2.7 install --root=/var/tmp/portage/dev-python/pytables-2.2/image/ --no-compile
* Found numpy 1.4.1 package installed.
* Found numexpr 1.3.1 package installed.
* Found HDF5 headers at ``/usr/include``, library at ``/usr/lib``.
* Found LZO 2 headers at ``/usr/include``, library at ``/usr/lib``.
* Skipping detection of LZO 1 since LZO 2 has already been found.
* Found bzip2 headers at ``/usr/include``, library at ``/lib``.
* Found pthreads headers at ``/usr/include``, library at ``/usr/lib``.
[39mrunning build[0m
[39mrunning build_py[0m
[31mwarning: build_py: byte-compiling is disabled, skipping.
[0m
[39mrunning build_ext[0m
[39mcythoning tables/linkExtension.pyx to tables/linkExtension.c[0m
[39mbuilding 'tables.linkExtension' extension[0m
[39mC compiler: i686-pc-linux-gnu-gcc -pthread -O2 -pipe -fPIC
[0m
[39mcompile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-O2 -pipe -Isrc -DH5_USE_16_API'[0m
[39mi686-pc-linux-gnu-gcc: tables/linkExtension.c[0m
tables/linkExtension.c: In function ‘__pyx_pf_6tables_13linkExtension_12ExternalLink__g_open’:
tables/linkExtension.c:1853:3: warning: passing argument 4 of ‘H5Lunpack_elink_val’ from incompatible pointer type
/usr/include/H5Lpublic.h:193:15: note: expected ‘const char **’ but argument is of type ‘char **’
tables/linkExtension.c:1853:3: warning: passing argument 5 of ‘H5Lunpack_elink_val’ from incompatible pointer type
/usr/include/H5Lpublic.h:193:15: note: expected ‘const char **’ but argument is of type ‘char **’
[39mi686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build-2.7/temp.linux-i686-2.7/tables/linkExtension.o -L/usr/lib -lhdf5 -lpthread -lpython2.7 -o build-2.7/lib.linux-i686-2.7/tables/linkExtension.so[0m
[39mrunning build_scripts[0m
[39mrunning install[0m
[39mrunning install_lib[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/utils.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/carray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/registry.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/array.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/parameters.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/linkExtension.so -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/file.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/leaf.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/hdf5Extension.so -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/group.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/expression.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/attr-u16.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_tree.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_timetype.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_numarray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_backcompat.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_lists.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/idx-std-1.x.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/Tables_lzo2_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_hdf5compat.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_compound_chunked.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/elink2.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/zerodim-attrs-1.4.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_i64be.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/slink.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_numpy.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/array_mdatom.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_earray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_index_backcompat.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_basics.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_i32le.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_enum.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/zerodim-attrs-1.3.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_array.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_f64be.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/time-table-vlarray-1_x.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_tables.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_types.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_i32be.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_enum.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_all.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_szip.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_SDSextendible.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_carray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/flavored_vlarrays-format1.6.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_tablesMD.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_Numeric.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_do_undo.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_attributes.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_garbage.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_i64le.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/times-nested-be.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/Tables_lzo1.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/blosc_bigendian.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/check_leaks.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/common.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_create.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/elink.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_vlarray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_links.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_unsupptype.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/ex-noattr.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/Tables_lzo1_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_nestedtypes.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/non-chunked-table.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_expression.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/smpl_f64le.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/indexes_2_0.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/vlunicode_endian.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/nested-type-with-gaps.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/Tables_lzo2.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tests/test_queries.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/undoredo.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/earray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/scripts/ptdump.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/scripts/ptrepack.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/scripts/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/link.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/_conditions_common.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/_table_common.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/utilsExtension.so -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/filters.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/vlarray.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/description.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/netcdf3/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/netcdf3/tests/test_netcdf3.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3/tests[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/netcdf3/scripts/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/netcdf3/scripts/nctoh5.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3/scripts[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/netcdf3/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/netcdf3[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/conditions.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/attributeset.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/atom.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/table.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/filenode.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/tests/test_filenode.dat -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/tests/test_filenode.xbm -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/tests/test_filenode_v1.h5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/tests/test_filenode.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nodes/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nodes[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/attributeaccess.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/nestedrecords.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/tests/test_nestedrecords.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/tests/test_nriterators.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra/tests[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/nra/nriterators.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/nra[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/exceptions.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/unimplemented.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/misc[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/misc/proxydict.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/misc[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/misc/lrucache.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/misc[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/misc/enum.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/misc[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/misc/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables/misc[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/path.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/__init__.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/node.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/_parameters_common.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/_comp_bzip2.so -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/flavor.py -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/_comp_lzo.so -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[39mcopying build-2.7/lib.linux-i686-2.7/tables/tableExtension.so -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables[0m
[31mwarning: install_lib: byte-compiling is disabled, skipping.
[0m
[39mrunning install_scripts[0m
[39mcreating /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin[0m
[39mcopying build-2.7/scripts-2.7/ptdump -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin[0m
[39mcopying build-2.7/scripts-2.7/ptrepack -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin[0m
[39mcopying build-2.7/scripts-2.7/nctoh5 -> /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin[0m
[39mchanging mode of /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin/ptdump to 755[0m
[39mchanging mode of /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin/ptrepack to 755[0m
[39mchanging mode of /var/tmp/portage/dev-python/pytables-2.2/image/usr/bin/nctoh5 to 755[0m
[39mrunning install_egg_info[0m
[39mWriting /var/tmp/portage/dev-python/pytables-2.2/image/usr/lib/python2.7/site-packages/tables-2.2-py2.7.egg-info[0m
 * Generating '/usr/bin/ptdump' wrapper script
 * Generating '/usr/bin/ptrepack' wrapper script
 * Generating '/usr/bin/nctoh5' wrapper script
>>> Completed installing pytables-2.2 into /var/tmp/portage/dev-python/pytables-2.2/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/lib/python2.7/site-packages/tables/linkExtension.so
   usr/lib/python2.7/site-packages/tables/hdf5Extension.so
   usr/lib/python2.7/site-packages/tables/utilsExtension.so
   usr/lib/python2.7/site-packages/tables/_comp_bzip2.so
   usr/lib/python2.7/site-packages/tables/_comp_lzo.so
   usr/lib/python2.7/site-packages/tables/tableExtension.so