raxml-7.2.6.ebuild

raxml-7.2.6.ebuild (text/plain), 2.07 KB, created by Martin Mokrejš on 2010-04-06 10:41:28 UTC

# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.5.ebuild,v 1.1 2010/01/27 15:58:33 weaver Exp $

EAPI="2"

inherit toolchain-funcs

DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"

LICENSE="GPL-2"
SLOT="0"
IUSE="+threads mpi"
KEYWORDS="~amd64 ~x86"

# only OpenMPI is supported for parallel builds
DEPEND="mpi? ( sys-cluster/openmpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/RAxML-${PV}"

src_prepare() {
	sed -i -e "s/CFLAGS =/CFLAGS := ${CFLAGS}/" \
		-e 's/CC = gcc/CC = '$(tc-getCC)'/' \
		Makefile.* || die
}

# sequential version: Makefile.gcc
# seq+SSE3:  Makefile.SSE3.gcc
# Pthreads:  Makefile.PTHREADS.gcc
# Pthreads+SSE3: Makefile.SSE3.PTHREADS.gcc
# 
# hybrid MPI/Pthreads: Makefile.HYBRID.gcc
# hybrid MPI/Pthreads+SSE3: Makefile.SSE3.HYBRID.gcc
# 
# pure MPI:  Makefile.MPI.gcc
# pure MPI+SSE3: Makefile.SSE3.MPI.gcc 

src_compile() {
	emake -f Makefile.gcc || die
	emake -f Makefile.SSE3.gcc clean && emake -f Makefile.SSE3.gcc || die
	if use threads; then
		emake -f Makefile.PTHREADS.gcc clean && emake -f Makefile.PTHREADS.gcc || die
		emake -f Makefile.SSE3.PTHREADS.gcc clean && emake -f Makefile.SSE3.PTHREADS.gcc || die
	fi
	if use mpi; then
		emake -f Makefile.MPI.gcc clean && emake -f Makefile.MPI.gcc || die
		emake -f Makefile.SSE3.MPI.gcc clean && emake -f Makefile.SSE3.MPI.gcc || die
	fi
	if use threads and use mpi; then
		emake -f Makefile.HYBRID.gcc clean && emake -f Makefile.HYBRID.gcc || die
		emake -f Makefile.SSE3.HYBRID.gcc clean && emake -f Makefile.SSE3.HYBRID.gcc || die
	fi
	
}

src_install() {
	dobin raxmlHPC raxmlHPC-SSE3 || die
	if use mpi; then dobin raxmlHPC-MPI raxmlHPC-MPI-SSE3 || die; fi
	if use threads; then dobin raxmlHPC-PTHREADS raxmlHPC-PTHREADS-SSE3 || die; fi
	if use threads and use mpi; then dobin raxmlHPC-HYBRID raxmlHPC-HYBRID-SSE3 || die; fi
}