* CPV: sci-biology/ncbi-tools++-2009.05.15-r3 * REPO: gentoo * USE: amd64 elibc_glibc kernel_linux multilib userland_GNU >>> Unpacking source... >>> Unpacking ncbi_cxx--May_15_2009.tar.gz to /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work >>> Source unpacked in /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work >>> Preparing source in /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009 ... * Applying ncbi-tools++-2009.05.15-gcc44.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009 ... configure: creating cache config.cache checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/lib/ccache/bin/gcc adjusted C++ compiler: /usr/lib/ccache/bin/g++ checking whether /usr/lib/ccache/bin/gcc supports -Wl,-E... yes g++: no input files configure: WARNING: Unable to find static libstdc++ requested by --with-bin-release. checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for lorder... echo checking for tsort... tsort checking for ccache... ccache checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for egrep... grep -E checking how to run grep -E quietly... grep -E -q checking for valgrind... no checking how to run the C++ preprocessor... /usr/lib/ccache/bin/g++ -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... 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for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz in /usr... yes checking for libbz2 in /usr... yes checking for liblzo2... yes checking for libpcre in /usr... yes checking for libgnutls-config... no checking for libgnutls... yes checking for libssl in /usr... yes checking for reentrant Sybase libraries... no checking for Sybase in ... no checking for mysql_config... no checking for Berkeley DB libraries in /etc/ncbi/BerkeleyDB... yes checking Berkeley DB version (4.3 or newer required)... 4.7.25 configure: WARNING: Untested Berkeley DB version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-bdb. checking for native Berkeley DB C++ wrappers (optional)... no checking for python... /usr/bin/python checking for usable Python 2.6 libraries... yes checking for python2.3... no checking for python2.4... no checking for python2.5... /usr/bin/python2.5 checking for usable Python 2.5 libraries... yes checking for CPPUNIT in /etc/ncbi/cppunit... no checking Boost version... 1_42 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -gcc44-d (autodetected) checking for Boost.Regex in /etc/ncbi/boost... no checking for Boost.Spirit in /etc/ncbi/boost... yes checking for Boost.Test in /etc/ncbi/boost... included-only checking for Boost.Threads in /etc/ncbi/boost... no checking for the NCBI C toolkit in /etc/ncbi... no checking for X... libraries /usr/lib64, headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for XextCreateExtension in -lXext... yes checking for XtMainLoop in -lXt... yes checking for XmuMakeAtom in -lXmu... yes checking for OpenGL... yes 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checking whether FREETYPE_INCLUDE needs doctoring... no checking whether FreeType works... yes configure: looking for configurables below /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009... configure: ...done updating cache config.cache configure: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status/config.status config.status: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/dbapi/driver/ftds8/samples/Makefile config.status: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/dbapi/driver/ftds8/Makefile config.status: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/dbapi/driver/ftds8/freetds/tds/Makefile config.status: creating 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/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/util/qparse/test/Makefile config.status: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/util/qparse/Makefile config.status: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/./Makefile config.status: creating /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc/ncbiconf_unix.h config.status: executing default commands /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib/ncbicfg.c is updated =============================================================================== NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -pthread -O LIBRARIES: build as dynamic by default FEATURES: MT DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 LZO2 LZO PCRE GNUTLS OPENSSL BerkeleyDB PYTHON PYTHON25 Boost.Spirit Boost.Test.Included OpenGL GLUT ICU EXPAT LIBXML LIBXSLT SQLITE3 JPEG PNG TIFF UNGIF XPM FreeType disabled: LocalZ LocalBZ2 LocalPCRE Sybase DBLib FreeTDS MySQL BerkeleyDB++ ODBC PYTHON23 PYTHON24 CPPUNIT Boost.Regex Boost.Test Boost.Threads C-Toolkit MESA FLTK wxWindows wxWidgets wx2.8 Fast-CGI LocalSSS LocalNCBILS LocalMSGMAIL2 SSSUTILS SSSDB SP ORBacus SABLOT Xerces Xalan SQLITE OECHEM GIF PROJECTS: enabled: serial objects bdb dbapi app ctools algo disabled: local_lbsm connext ncbi_crypt gui gbench Tools / flags / paths: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/Makefile.mk Configuration header: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc/ncbiconf_unix.h To build everything: cd /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build && make all_r or simply run make in the current directory ******* CONFIGURATION SUCCESSFUL ******* >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009 ... make all_r -C GCC443-ReleaseMTDLL64/build make: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build' make[1]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build' make[2]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build' make[2]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[3]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[4]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[4]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_strings.c. cc1: warning: command line option "-fpermissive" is valid for C++/ObjC++ but not for C Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/expr.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/request_control.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/request_ctx.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/version.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/syslog.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/stream_utils.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/rwstreambuf.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/plugin_manager_store.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/plugin_manager.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/obj_store.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbitime.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbithr.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbistre.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbistr.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbireg.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiobj.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbimtx.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbimempool.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbifile.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexpt.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbienv.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidll.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag_p.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. cc1: warning: command line option "-fpermissive" is valid for C++/ObjC++ but not for C Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiatomic.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiargs.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiapp.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_system.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_stack.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_signal.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_process.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_param.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_config.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/metareg.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/env_reg.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ddumpable.cpp. Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/blob_storage.cpp. make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/blob_storage.cpp -o blob_storage.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ddumpable.cpp -o ddumpable.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/env_reg.cpp -o env_reg.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/metareg.cpp -o metareg.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_config.cpp -o ncbi_config.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_param.cpp -o ncbi_param.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_process.cpp -o ncbi_process.o /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_process.cpp: In static member function ‘static bool ncbi::CProcess::Daemonize(const char*, unsigned int)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_process.cpp:356: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_signal.cpp -o ncbi_signal.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_stack.cpp -o ncbi_stack.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_system.cpp -o ncbi_system.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiapp.cpp -o ncbiapp.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiargs.cpp -o ncbiargs.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiatomic.cpp -o ncbiatomic.o ccache /usr/lib/ccache/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include ncbicfg.c -o ncbicfg.o cc1: warning: command line option "-fpermissive" is valid for C++/ObjC++ but not for C cc1: warning: command line option "-fpermissive" is valid for C++/ObjC++ but not for C ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidbg.cpp -o ncbidbg.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp -o ncbidiag.o /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In function ‘void ncbi::ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:552: warning: ‘std::map, std::allocator >, std::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated (declared at /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include/corelib/ncbidiag.hpp:1602) /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In member function ‘void ncbi::CDiagContext::SetProperty(const std::string&, const std::string&, ncbi::CDiagContext::EPropertyMode)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:1369: warning: ‘std::map, std::allocator >, std::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated (declared at /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:654) /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In member function ‘std::string ncbi::CDiagContext::GetProperty(const std::string&, ncbi::CDiagContext::EPropertyMode) const’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:1432: warning: ‘std::map, std::allocator >, std::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated (declared at /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:654) /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In member function ‘void ncbi::CDiagContext::DeleteProperty(const std::string&, ncbi::CDiagContext::EPropertyMode)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:1457: warning: ‘std::map, std::allocator >, std::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated (declared at /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:654) /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In member function ‘void ncbi::CDiagContext::PrintProperties()’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:1489: warning: ‘std::map, std::allocator >, std::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated (declared at /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:654) /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In static member function ‘static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:2105: warning: ‘virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()’ is deprecated (declared at /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include/corelib/ncbiapp.hpp:295) /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In member function ‘virtual void ncbi::CFileHandleDiagHandler::Reopen(int)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:4377: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp: In member function ‘virtual void ncbi::CFileHandleDiagHandler::Post(const ncbi::SDiagMessage&)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag.cpp:4405: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbidll.cpp -o ncbidll.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbienv.cpp -o ncbienv.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp -o ncbiexec.o /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp: In function ‘int ncbi::s_SpawnUnix(ncbi::ESpawnFunc, ncbi::CExec::EMode, const char*, const char* const*, const char* const*)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp:165: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp:166: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp:167: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexec.cpp:190: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiexpt.cpp -o ncbiexpt.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbifile.cpp -o ncbifile.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbimempool.cpp -o ncbimempool.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbimtx.cpp -o ncbimtx.o /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbimtx.cpp: In member function ‘ncbi::TRWLockHolderRef ncbi::CYieldingRWLock::AcquireLock(ncbi::ERWLockType)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbimtx.cpp:1341: warning: suggest parentheses around ‘&&’ within ‘||’ ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbiobj.cpp -o ncbiobj.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbireg.cpp -o ncbireg.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbistr.cpp -o ncbistr.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbistre.cpp -o ncbistre.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbithr.cpp -o ncbithr.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbitime.cpp -o ncbitime.o /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbitime.cpp: In member function ‘bool ncbi::CTime::IsLeap() const’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbitime.cpp:1774: warning: suggest parentheses around ‘&&’ within ‘||’ ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/obj_store.cpp -o obj_store.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/plugin_manager.cpp -o plugin_manager.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/rwstreambuf.cpp -o rwstreambuf.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/stream_utils.cpp -o stream_utils.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/syslog.cpp -o syslog.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/version.cpp -o version.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/request_ctx.cpp -o request_ctx.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/request_control.cpp -o request_control.o ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/expr.cpp -o expr.o ccache /usr/lib/ccache/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/ncbi_strings.c -o ncbi_strings.o cc1: warning: command line option "-fpermissive" is valid for C++/ObjC++ but not for C cc1: warning: command line option "-fpermissive" is valid for C++/ObjC++ but not for C rm -f libxncbi.so .libxncbi.so.stamp /usr/lib/ccache/bin/g++ -shared -o libxncbi.so -pthread -O blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o -Wl,-rpath,/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/image//usr/lib64/ncbi-tools++ -Wl,-rpath-link,/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib -L/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib -ldl -lm -lpthread /bin/sh /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/scripts/common/impl/if_diff.sh ln -f libxncbi.so /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib ln -f libxncbi.so /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib/libxncbi.so ln -f .xncbi.dep /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status/.xncbi.dep make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/test_mt.cpp. make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/test_mt.cpp -o test_mt.o rm -f libtest_mt.so .libtest_mt.so.stamp /usr/lib/ccache/bin/g++ -shared -o libtest_mt.so -pthread -O test_mt.o -Wl,-rpath,/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/image//usr/lib64/ncbi-tools++ -Wl,-rpath-link,/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib -L/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib -lm -lpthread /bin/sh /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/scripts/common/impl/if_diff.sh ln -f libtest_mt.so /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib ln -f libtest_mt.so /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib/libtest_mt.so ln -f .test_mt.dep /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status/.test_mt.dep make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' Updating dependency information for /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/test_boost.cpp. make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' ccache /usr/lib/ccache/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fpermissive -D_MT -D_REENTRANT -D_THREAD_SAFE -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/inc -I/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/include -I/etc/ncbi/boost/include -DBOOST_DISABLE_THREADS /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/test_boost.cpp -o test_boost.o /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/test_boost.cpp: In member function ‘virtual void ncbi::CNcbiTestsObserver::test_unit_finish(const boost::unit_test::test_unit&, long unsigned int)’: /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib/test_boost.cpp:1429: error: no matching function for call to ‘boost::execution_exception::execution_exception(boost::execution_exception::error_code, const char [17])’ /usr/include/boost/test/impl/execution_monitor.ipp:1346: note: candidates are: boost::execution_exception::execution_exception(boost::execution_exception::error_code, boost::unit_test::const_string, const boost::execution_exception::location&) /usr/include/boost/test/execution_monitor.hpp:85: note: boost::execution_exception::execution_exception(const boost::execution_exception&) make[5]: *** [test_boost.o] Error 1 make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[5]: Entering directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' rm -f libtest_boost.so .test_boost.dep .libtest_boost.so.stamp if [ '/bin/sh /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/scripts/common/impl/if_diff.sh "ln -f"' != '@:' -a -d /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status -a -w /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status -a /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/src/corelib != . ]; then \ rm -f /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib/libtest_boost.so /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib/libtest_boost.so \ /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status/.test_boost.dep /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/status/.test_boost.dep; \ [ '@# ' = '@# ' ] || \ rm -f /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib/libtest_boost.so /var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/lib/libtest_boost.so; \ fi make[5]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[4]: *** [all.nonusr] Error 2 make[4]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[3]: *** [all.real] Error 2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[2]: *** [all_r.needs-reqs] Error 2 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build/corelib' make[1]: *** [all_r.real] Error 5 make[1]: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build' make: *** [all_r.needs-reqs] Error 2 make: Leaving directory `/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009/GCC443-ReleaseMTDLL64/build' * ERROR: sci-biology/ncbi-tools++-2009.05.15-r3 failed: * (no error message) * * Call stack: * ebuild.sh, line 48: Called src_compile * environment, line 2458: Called die * The specific snippet of code: * emake all_r -C GCC*-Release*/build || die * * If you need support, post the output of 'emerge --info =sci-biology/ncbi-tools++-2009.05.15-r3', * the complete build log and the output of 'emerge -pqv =sci-biology/ncbi-tools++-2009.05.15-r3'. * The complete build log is located at '/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/temp/environment'. * S: '/var/tmp/portage/sci-biology/ncbi-tools++-2009.05.15-r3/work/ncbi_cxx--May_15_2009'