This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ARACHNE configure 1.0, which was generated by GNU Autoconf 2.63. Invocation command line was $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 ## --------- ## ## Platform. ## ## --------- ## hostname = 454pc uname -m = x86_64 uname -r = 2.6.32-default uname -s = Linux uname -v = #7 SMP Tue Mar 9 13:39:39 MET 2010 /usr/bin/uname -p = Intel(R) Core(TM)2 Quad CPU Q9300 @ 2.50GHz /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib64/portage/bin/ebuild-helpers PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /opt/bin PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.4.3 PATH: /var/qmail/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1887: checking for gawk configure:1903: found /usr/bin/gawk configure:1914: result: gawk configure:1925: checking for a sed that does not truncate output configure:1991: result: /bin/sed configure:2000: checking for bison configure:2016: found /usr/bin/bison configure:2027: result: bison -y configure:2053: checking for x86_64-pc-linux-gnu-g++ configure:2069: found /usr/bin/x86_64-pc-linux-gnu-g++ configure:2080: result: x86_64-pc-linux-gnu-g++ configure:2151: checking for C++ compiler version configure:2159: x86_64-pc-linux-gnu-g++ --version >&5 x86_64-pc-linux-gnu-g++ (Gentoo 4.4.3 p1.0) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2163: $? = 0 configure:2170: x86_64-pc-linux-gnu-g++ -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.4.3/work/gcc-4.4.3/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.4.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.3/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --disable-libmudflap --disable-libssp --disable-libgomp --enable-cld --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.4.3/python --disable-libgcj --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.4.3 p1.0' Thread model: posix gcc version 4.4.3 (Gentoo 4.4.3 p1.0) configure:2174: $? = 0 configure:2181: x86_64-pc-linux-gnu-g++ -V >&5 x86_64-pc-linux-gnu-g++: '-V' option must have argument configure:2185: $? = 1 configure:2208: checking for C++ compiler default output file name configure:2230: x86_64-pc-linux-gnu-g++ -O2 -pipe -march=nocona -Wl,-O1 conftest.cpp >&5 configure:2234: $? = 0 configure:2272: result: a.out configure:2291: checking whether the C++ compiler works configure:2301: ./a.out configure:2305: $? = 0 configure:2324: result: yes configure:2331: checking whether we are cross compiling configure:2333: result: no configure:2336: checking for suffix of executables configure:2343: x86_64-pc-linux-gnu-g++ -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.cpp >&5 configure:2347: $? = 0 configure:2373: result: configure:2379: checking for suffix of object files configure:2405: x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=nocona conftest.cpp >&5 configure:2409: $? = 0 configure:2434: result: o configure:2438: checking whether we are using the GNU C++ compiler configure:2467: x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=nocona conftest.cpp >&5 configure:2474: $? = 0 configure:2491: result: yes configure:2500: checking whether x86_64-pc-linux-gnu-g++ accepts -g configure:2530: x86_64-pc-linux-gnu-g++ -c -g conftest.cpp >&5 configure:2537: $? = 0 configure:2638: result: yes configure:2669: checking for x86_64-pc-linux-gnu-gcc configure:2685: found /usr/bin/x86_64-pc-linux-gnu-gcc configure:2696: result: x86_64-pc-linux-gnu-gcc configure:2968: checking for C compiler version configure:2976: x86_64-pc-linux-gnu-gcc --version >&5 x86_64-pc-linux-gnu-gcc (Gentoo 4.4.3 p1.0) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2980: $? = 0 configure:2987: x86_64-pc-linux-gnu-gcc -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.4.3/work/gcc-4.4.3/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.4.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.3/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --disable-libmudflap --disable-libssp --disable-libgomp --enable-cld --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.4.3/python --disable-libgcj --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.4.3 p1.0' Thread model: posix gcc version 4.4.3 (Gentoo 4.4.3 p1.0) configure:2991: $? = 0 configure:2998: x86_64-pc-linux-gnu-gcc -V >&5 x86_64-pc-linux-gnu-gcc: '-V' option must have argument configure:3002: $? = 1 configure:3005: checking whether we are using the GNU C compiler configure:3034: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:3041: $? = 0 configure:3058: result: yes configure:3067: checking whether x86_64-pc-linux-gnu-gcc accepts -g configure:3097: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 configure:3104: $? = 0 configure:3205: result: yes configure:3222: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 configure:3296: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:3303: $? = 0 configure:3326: result: none needed configure:3349: checking for flex configure:3365: found /usr/bin/flex configure:3376: result: flex configure:3413: flex conftest.l configure:3417: $? = 0 configure:3419: checking lex output file root configure:3435: result: lex.yy configure:3440: checking lex library configure:3459: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 lex.yy.c: In function 'yylex': conftest.l:2: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result conftest.l:9: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result /var/tmp/portage/sci-biology/vaal-1.2-r1/temp/ccETyX6s.o: In function `yylex': conftest.c:(.text+0x1026): undefined reference to `yywrap' conftest.c:(.text+0x13d8): undefined reference to `yywrap' /var/tmp/portage/sci-biology/vaal-1.2-r1/temp/ccETyX6s.o: In function `main': conftest.c:(.text+0x15e2): undefined reference to `yywrap' collect2: ld returned 1 exit status configure:3466: $? = 1 configure: failed program was: | | #line 3 "lex.yy.c" | | #define YY_INT_ALIGNED short int | | /* A lexical scanner generated by flex */ | | #define FLEX_SCANNER | #define YY_FLEX_MAJOR_VERSION 2 | #define YY_FLEX_MINOR_VERSION 5 | #define YY_FLEX_SUBMINOR_VERSION 35 | #if YY_FLEX_SUBMINOR_VERSION > 0 | #define FLEX_BETA | #endif | | /* First, we deal with platform-specific or compiler-specific issues. */ | | /* begin standard C headers. */ | #include | #include | #include | #include | | /* end standard C headers. */ | | /* flex integer type definitions */ | | #ifndef FLEXINT_H | #define FLEXINT_H | | /* C99 systems have . Non-C99 systems may or may not. */ | | #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L | | /* C99 says to define __STDC_LIMIT_MACROS before including stdint.h, | * if you want the limit (max/min) macros for int types. | */ | #ifndef __STDC_LIMIT_MACROS | #define __STDC_LIMIT_MACROS 1 | #endif | | #include | typedef int8_t flex_int8_t; | typedef uint8_t flex_uint8_t; | typedef int16_t flex_int16_t; | typedef uint16_t flex_uint16_t; | typedef int32_t flex_int32_t; | typedef uint32_t flex_uint32_t; | #else | typedef signed char flex_int8_t; | typedef short int flex_int16_t; | typedef int flex_int32_t; | typedef unsigned char flex_uint8_t; | typedef unsigned short int flex_uint16_t; | typedef unsigned int flex_uint32_t; | #endif /* ! C99 */ | | /* Limits of integral types. */ | #ifndef INT8_MIN | #define INT8_MIN (-128) | #endif | #ifndef INT16_MIN | #define INT16_MIN (-32767-1) | #endif | #ifndef INT32_MIN | #define INT32_MIN (-2147483647-1) | #endif | #ifndef INT8_MAX | #define INT8_MAX (127) | #endif | #ifndef INT16_MAX | #define INT16_MAX (32767) | #endif | #ifndef INT32_MAX | #define INT32_MAX (2147483647) | #endif | #ifndef UINT8_MAX | #define UINT8_MAX (255U) | #endif | #ifndef UINT16_MAX | #define UINT16_MAX (65535U) | #endif | #ifndef UINT32_MAX | #define UINT32_MAX (4294967295U) | #endif | | #endif /* ! FLEXINT_H */ | | #ifdef __cplusplus | | /* The "const" storage-class-modifier is valid. */ | #define YY_USE_CONST | | #else /* ! __cplusplus */ | | /* C99 requires __STDC__ to be defined as 1. */ | #if defined (__STDC__) | | #define YY_USE_CONST | | #endif /* defined (__STDC__) */ | #endif /* ! __cplusplus */ | | #ifdef YY_USE_CONST | #define yyconst const | #else | #define yyconst | #endif | | /* Returned upon end-of-file. */ | #define YY_NULL 0 | | /* Promotes a possibly negative, possibly signed char to an unsigned | * integer for use as an array index. If the signed char is negative, | * we want to instead treat it as an 8-bit unsigned char, hence the | * double cast. | */ | #define YY_SC_TO_UI(c) ((unsigned int) (unsigned char) c) | | /* Enter a start condition. This macro really ought to take a parameter, | * but we do it the disgusting crufty way forced on us by the ()-less | * definition of BEGIN. | */ | #define BEGIN (yy_start) = 1 + 2 * | | /* Translate the current start state into a value that can be later handed | * to BEGIN to return to the state. The YYSTATE alias is for lex | * compatibility. | */ | #define YY_START (((yy_start) - 1) / 2) | #define YYSTATE YY_START | | /* Action number for EOF rule of a given start state. */ | #define YY_STATE_EOF(state) (YY_END_OF_BUFFER + state + 1) | | /* Special action meaning "start processing a new file". */ | #define YY_NEW_FILE yyrestart(yyin ) | | #define YY_END_OF_BUFFER_CHAR 0 | | /* Size of default input buffer. */ | #ifndef YY_BUF_SIZE | #define YY_BUF_SIZE 16384 | #endif | | /* The state buf must be large enough to hold one state per character in the main buffer. | */ | #define YY_STATE_BUF_SIZE ((YY_BUF_SIZE + 2) * sizeof(yy_state_type)) | | #ifndef YY_TYPEDEF_YY_BUFFER_STATE | #define YY_TYPEDEF_YY_BUFFER_STATE | typedef struct yy_buffer_state *YY_BUFFER_STATE; | #endif | | extern int yyleng; | | extern FILE *yyin, *yyout; | | #define EOB_ACT_CONTINUE_SCAN 0 | #define EOB_ACT_END_OF_FILE 1 | #define EOB_ACT_LAST_MATCH 2 | | #define YY_LESS_LINENO(n) | | /* Return all but the first "n" matched characters back to the input stream. */ | #define yyless(n) \ | do \ | { \ | /* Undo effects of setting up yytext. */ \ | int yyless_macro_arg = (n); \ | YY_LESS_LINENO(yyless_macro_arg);\ | *yy_cp = (yy_hold_char); \ | YY_RESTORE_YY_MORE_OFFSET \ | (yy_c_buf_p) = yy_cp = yy_bp + yyless_macro_arg - YY_MORE_ADJ; \ | YY_DO_BEFORE_ACTION; /* set up yytext again */ \ | } \ | while ( 0 ) | | #define unput(c) yyunput( c, (yytext_ptr) ) | | #ifndef YY_TYPEDEF_YY_SIZE_T | #define YY_TYPEDEF_YY_SIZE_T | typedef size_t yy_size_t; | #endif | | #ifndef YY_STRUCT_YY_BUFFER_STATE | #define YY_STRUCT_YY_BUFFER_STATE | struct yy_buffer_state | { | FILE *yy_input_file; | | char *yy_ch_buf; /* input buffer */ | char *yy_buf_pos; /* current position in input buffer */ | | /* Size of input buffer in bytes, not including room for EOB | * characters. | */ | yy_size_t yy_buf_size; | | /* Number of characters read into yy_ch_buf, not including EOB | * characters. | */ | int yy_n_chars; | | /* Whether we "own" the buffer - i.e., we know we created it, | * and can realloc() it to grow it, and should free() it to | * delete it. | */ | int yy_is_our_buffer; | | /* Whether this is an "interactive" input source; if so, and | * if we're using stdio for input, then we want to use getc() | * instead of fread(), to make sure we stop fetching input after | * each newline. | */ | int yy_is_interactive; | | /* Whether we're considered to be at the beginning of a line. | * If so, '^' rules will be active on the next match, otherwise | * not. | */ | int yy_at_bol; | | int yy_bs_lineno; /**< The line count. */ | int yy_bs_column; /**< The column count. */ | | /* Whether to try to fill the input buffer when we reach the | * end of it. | */ | int yy_fill_buffer; | | int yy_buffer_status; | | #define YY_BUFFER_NEW 0 | #define YY_BUFFER_NORMAL 1 | /* When an EOF's been seen but there's still some text to process | * then we mark the buffer as YY_EOF_PENDING, to indicate that we | * shouldn't try reading from the input source any more. We might | * still have a bunch of tokens to match, though, because of | * possible backing-up. | * | * When we actually see the EOF, we change the status to "new" | * (via yyrestart()), so that the user can continue scanning by | * just pointing yyin at a new input file. | */ | #define YY_BUFFER_EOF_PENDING 2 | | }; | #endif /* !YY_STRUCT_YY_BUFFER_STATE */ | | /* Stack of input buffers. */ | static size_t yy_buffer_stack_top = 0; /**< index of top of stack. */ | static size_t yy_buffer_stack_max = 0; /**< capacity of stack. */ | static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ | | /* We provide macros for accessing buffer states in case in the | * future we want to put the buffer states in a more general | * "scanner state". | * | * Returns the top of the stack, or NULL. | */ | #define YY_CURRENT_BUFFER ( (yy_buffer_stack) \ | ? (yy_buffer_stack)[(yy_buffer_stack_top)] \ | : NULL) | | /* Same as previous macro, but useful when we know that the buffer stack is not | * NULL or when we need an lvalue. For internal use only. | */ | #define YY_CURRENT_BUFFER_LVALUE (yy_buffer_stack)[(yy_buffer_stack_top)] | | /* yy_hold_char holds the character lost when yytext is formed. */ | static char yy_hold_char; | static int yy_n_chars; /* number of characters read into yy_ch_buf */ | int yyleng; | | /* Points to current character in buffer. */ | static char *yy_c_buf_p = (char *) 0; | static int yy_init = 0; /* whether we need to initialize */ | static int yy_start = 0; /* start state number */ | | /* Flag which is used to allow yywrap()'s to do buffer switches | * instead of setting up a fresh yyin. A bit of a hack ... | */ | static int yy_did_buffer_switch_on_eof; | | void yyrestart (FILE *input_file ); | void yy_switch_to_buffer (YY_BUFFER_STATE new_buffer ); | YY_BUFFER_STATE yy_create_buffer (FILE *file,int size ); | void yy_delete_buffer (YY_BUFFER_STATE b ); | void yy_flush_buffer (YY_BUFFER_STATE b ); | void yypush_buffer_state (YY_BUFFER_STATE new_buffer ); | void yypop_buffer_state (void ); | | static void yyensure_buffer_stack (void ); | static void yy_load_buffer_state (void ); | static void yy_init_buffer (YY_BUFFER_STATE b,FILE *file ); | | #define YY_FLUSH_BUFFER yy_flush_buffer(YY_CURRENT_BUFFER ) | | YY_BUFFER_STATE yy_scan_buffer (char *base,yy_size_t size ); | YY_BUFFER_STATE yy_scan_string (yyconst char *yy_str ); | YY_BUFFER_STATE yy_scan_bytes (yyconst char *bytes,int len ); | | void *yyalloc (yy_size_t ); | void *yyrealloc (void *,yy_size_t ); | void yyfree (void * ); | | #define yy_new_buffer yy_create_buffer | | #define yy_set_interactive(is_interactive) \ | { \ | if ( ! YY_CURRENT_BUFFER ){ \ | yyensure_buffer_stack (); \ | YY_CURRENT_BUFFER_LVALUE = \ | yy_create_buffer(yyin,YY_BUF_SIZE ); \ | } \ | YY_CURRENT_BUFFER_LVALUE->yy_is_interactive = is_interactive; \ | } | | #define yy_set_bol(at_bol) \ | { \ | if ( ! YY_CURRENT_BUFFER ){\ | yyensure_buffer_stack (); \ | YY_CURRENT_BUFFER_LVALUE = \ | yy_create_buffer(yyin,YY_BUF_SIZE ); \ | } \ | YY_CURRENT_BUFFER_LVALUE->yy_at_bol = at_bol; \ | } | | #define YY_AT_BOL() (YY_CURRENT_BUFFER_LVALUE->yy_at_bol) | | /* Begin user sect3 */ | | typedef unsigned char YY_CHAR; | | FILE *yyin = (FILE *) 0, *yyout = (FILE *) 0; | | typedef int yy_state_type; | | extern int yylineno; | | int yylineno = 1; | | extern char *yytext; | #define yytext_ptr yytext | | static yy_state_type yy_get_previous_state (void ); | static yy_state_type yy_try_NUL_trans (yy_state_type current_state ); | static int yy_get_next_buffer (void ); | static void yy_fatal_error (yyconst char msg[] ); | | /* Done after the current pattern has been matched and before the | * corresponding action - sets up yytext. | */ | #define YY_DO_BEFORE_ACTION \ | (yytext_ptr) = yy_bp; \ | (yytext_ptr) -= (yy_more_len); \ | yyleng = (size_t) (yy_cp - (yytext_ptr)); \ | (yy_hold_char) = *yy_cp; \ | *yy_cp = '\0'; \ | (yy_c_buf_p) = yy_cp; | | #define YY_NUM_RULES 8 | #define YY_END_OF_BUFFER 9 | /* This struct is not used in this scanner, | but its presence is necessary. */ | struct yy_trans_info | { | flex_int32_t yy_verify; | flex_int32_t yy_nxt; | }; | static yyconst flex_int16_t yy_acclist[23] = | { 0, | 9, 7, 8, 8, 1, 7, 8, 2, 7, 8, | 3, 7, 8, 4, 7, 8, 5, 7, 8, 6, | 7, 8 | } ; | | static yyconst flex_int16_t yy_accept[14] = | { 0, | 1, 1, 1, 2, 4, 5, 8, 11, 14, 17, | 20, 23, 23 | } ; | | static yyconst flex_int32_t yy_ec[256] = | { 0, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 3, 4, 5, 6, | | 7, 8, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1 | } ; | | static yyconst flex_int32_t yy_meta[9] = | { 0, | 1, 1, 1, 1, 1, 1, 1, 1 | } ; | | static yyconst flex_int16_t yy_base[13] = | { 0, | 0, 0, 9, 10, 10, 10, 10, 10, 10, 10, | 10, 10 | } ; | | static yyconst flex_int16_t yy_def[13] = | { 0, | 12, 1, 12, 12, 12, 12, 12, 12, 12, 12, | 12, 0 | } ; | | static yyconst flex_int16_t yy_nxt[19] = | { 0, | 4, 5, 6, 7, 8, 9, 10, 11, 12, 3, | 12, 12, 12, 12, 12, 12, 12, 12 | } ; | | static yyconst flex_int16_t yy_chk[19] = | { 0, | 1, 1, 1, 1, 1, 1, 1, 1, 3, 12, | 12, 12, 12, 12, 12, 12, 12, 12 | } ; | | extern int yy_flex_debug; | int yy_flex_debug = 0; | | static yy_state_type *yy_state_buf=0, *yy_state_ptr=0; | static char *yy_full_match; | static int yy_lp; | #define REJECT \ | { \ | *yy_cp = (yy_hold_char); /* undo effects of setting up yytext */ \ | yy_cp = (yy_full_match); /* restore poss. backed-over text */ \ | ++(yy_lp); \ | goto find_rule; \ | } | | static int yy_more_flag = 0; | static int yy_more_len = 0; | #define yymore() ((yy_more_flag) = 1) | #define YY_MORE_ADJ (yy_more_len) | #define YY_RESTORE_YY_MORE_OFFSET | char *yytext; | #line 1 "conftest.l" | #line 468 "lex.yy.c" | | #define INITIAL 0 | | #ifndef YY_NO_UNISTD_H | /* Special case for "unistd.h", since it is non-ANSI. We include it way | * down here because we want the user's section 1 to have been scanned first. | * The user has a chance to override it with an option. | */ | #include | #endif | | #ifndef YY_EXTRA_TYPE | #define YY_EXTRA_TYPE void * | #endif | | static int yy_init_globals (void ); | | /* Accessor methods to globals. | These are made visible to non-reentrant scanners for convenience. */ | | int yylex_destroy (void ); | | int yyget_debug (void ); | | void yyset_debug (int debug_flag ); | | YY_EXTRA_TYPE yyget_extra (void ); | | void yyset_extra (YY_EXTRA_TYPE user_defined ); | | FILE *yyget_in (void ); | | void yyset_in (FILE * in_str ); | | FILE *yyget_out (void ); | | void yyset_out (FILE * out_str ); | | int yyget_leng (void ); | | char *yyget_text (void ); | | int yyget_lineno (void ); | | void yyset_lineno (int line_number ); | | /* Macros after this point can all be overridden by user definitions in | * section 1. | */ | | #ifndef YY_SKIP_YYWRAP | #ifdef __cplusplus | extern "C" int yywrap (void ); | #else | extern int yywrap (void ); | #endif | #endif | | static void yyunput (int c,char *buf_ptr ); | | #ifndef yytext_ptr | static void yy_flex_strncpy (char *,yyconst char *,int ); | #endif | | #ifdef YY_NEED_STRLEN | static int yy_flex_strlen (yyconst char * ); | #endif | | #ifndef YY_NO_INPUT | | #ifdef __cplusplus | static int yyinput (void ); | #else | static int input (void ); | #endif | | #endif | | /* Amount of stuff to slurp up with each read. */ | #ifndef YY_READ_BUF_SIZE | #define YY_READ_BUF_SIZE 8192 | #endif | | /* Copy whatever the last rule matched to the standard output. */ | #ifndef ECHO | /* This used to be an fputs(), but since the string might contain NUL's, | * we now use fwrite(). | */ | #define ECHO fwrite( yytext, yyleng, 1, yyout ) | #endif | | /* Gets input and stuffs it into "buf". number of characters read, or YY_NULL, | * is returned in "result". | */ | #ifndef YY_INPUT | #define YY_INPUT(buf,result,max_size) \ | if ( YY_CURRENT_BUFFER_LVALUE->yy_is_interactive ) \ | { \ | int c = '*'; \ | int n; \ | for ( n = 0; n < max_size && \ | (c = getc( yyin )) != EOF && c != '\n'; ++n ) \ | buf[n] = (char) c; \ | if ( c == '\n' ) \ | buf[n++] = (char) c; \ | if ( c == EOF && ferror( yyin ) ) \ | YY_FATAL_ERROR( "input in flex scanner failed" ); \ | result = n; \ | } \ | else \ | { \ | errno=0; \ | while ( (result = fread(buf, 1, max_size, yyin))==0 && ferror(yyin)) \ | { \ | if( errno != EINTR) \ | { \ | YY_FATAL_ERROR( "input in flex scanner failed" ); \ | break; \ | } \ | errno=0; \ | clearerr(yyin); \ | } \ | }\ | \ | | #endif | | /* No semi-colon after return; correct usage is to write "yyterminate();" - | * we don't want an extra ';' after the "return" because that will cause | * some compilers to complain about unreachable statements. | */ | #ifndef yyterminate | #define yyterminate() return YY_NULL | #endif | | /* Number of entries by which start-condition stack grows. */ | #ifndef YY_START_STACK_INCR | #define YY_START_STACK_INCR 25 | #endif | | /* Report a fatal error. */ | #ifndef YY_FATAL_ERROR | #define YY_FATAL_ERROR(msg) yy_fatal_error( msg ) | #endif | | /* end tables serialization structures and prototypes */ | | /* Default declaration of generated scanner - a define so the user can | * easily add parameters. | */ | #ifndef YY_DECL | #define YY_DECL_IS_OURS 1 | | extern int yylex (void); | | #define YY_DECL int yylex (void) | #endif /* !YY_DECL */ | | /* Code executed at the beginning of each rule, after yytext and yyleng | * have been set up. | */ | #ifndef YY_USER_ACTION | #define YY_USER_ACTION | #endif | | /* Code executed at the end of each rule. */ | #ifndef YY_BREAK | #define YY_BREAK break; | #endif | | #define YY_RULE_SETUP \ | YY_USER_ACTION | | /** The main scanner function which does all the work. | */ | YY_DECL | { | register yy_state_type yy_current_state; | register char *yy_cp, *yy_bp; | register int yy_act; | | #line 1 "conftest.l" | | #line 652 "lex.yy.c" | | if ( !(yy_init) ) | { | (yy_init) = 1; | | #ifdef YY_USER_INIT | YY_USER_INIT; | #endif | | /* Create the reject buffer large enough to save one state per allowed character. */ | if ( ! (yy_state_buf) ) | (yy_state_buf) = (yy_state_type *)yyalloc(YY_STATE_BUF_SIZE ); | if ( ! (yy_state_buf) ) | YY_FATAL_ERROR( "out of dynamic memory in yylex()" ); | | if ( ! (yy_start) ) | (yy_start) = 1; /* first start state */ | | if ( ! yyin ) | yyin = stdin; | | if ( ! yyout ) | yyout = stdout; | | if ( ! YY_CURRENT_BUFFER ) { | yyensure_buffer_stack (); | YY_CURRENT_BUFFER_LVALUE = | yy_create_buffer(yyin,YY_BUF_SIZE ); | } | | yy_load_buffer_state( ); | } | | while ( 1 ) /* loops until end-of-file is reached */ | { | (yy_more_len) = 0; | if ( (yy_more_flag) ) | { | (yy_more_len) = (yy_c_buf_p) - (yytext_ptr); | (yy_more_flag) = 0; | } | yy_cp = (yy_c_buf_p); | | /* Support of yytext. */ | *yy_cp = (yy_hold_char); | | /* yy_bp points to the position in yy_ch_buf of the start of | * the current run. | */ | yy_bp = yy_cp; | | yy_current_state = (yy_start); | | (yy_state_ptr) = (yy_state_buf); | *(yy_state_ptr)++ = yy_current_state; | | yy_match: | do | { | register YY_CHAR yy_c = yy_ec[YY_SC_TO_UI(*yy_cp)]; | while ( yy_chk[yy_base[yy_current_state] + yy_c] != yy_current_state ) | { | yy_current_state = (int) yy_def[yy_current_state]; | if ( yy_current_state >= 13 ) | yy_c = yy_meta[(unsigned int) yy_c]; | } | yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; | *(yy_state_ptr)++ = yy_current_state; | ++yy_cp; | } | while ( yy_base[yy_current_state] != 10 ); | | yy_find_action: | yy_current_state = *--(yy_state_ptr); | (yy_lp) = yy_accept[yy_current_state]; | find_rule: /* we branch to this label when backing up */ | for ( ; ; ) /* until we find what rule we matched */ | { | if ( (yy_lp) && (yy_lp) < yy_accept[yy_current_state + 1] ) | { | yy_act = yy_acclist[(yy_lp)]; | { | (yy_full_match) = yy_cp; | break; | } | } | --yy_cp; | yy_current_state = *--(yy_state_ptr); | (yy_lp) = yy_accept[yy_current_state]; | } | | YY_DO_BEFORE_ACTION; | | do_action: /* This label is used only to access EOF actions. */ | | switch ( yy_act ) | { /* beginning of action switch */ | case 1: | YY_RULE_SETUP | #line 2 "conftest.l" | { ECHO; } | YY_BREAK | case 2: | YY_RULE_SETUP | #line 3 "conftest.l" | { REJECT; } | YY_BREAK | case 3: | YY_RULE_SETUP | #line 4 "conftest.l" | { yymore (); } | YY_BREAK | case 4: | YY_RULE_SETUP | #line 5 "conftest.l" | { yyless (1); } | YY_BREAK | case 5: | YY_RULE_SETUP | #line 6 "conftest.l" | { yyless (input () != 0); } | YY_BREAK | case 6: | YY_RULE_SETUP | #line 7 "conftest.l" | { unput (yytext[0]); } | YY_BREAK | case 7: | YY_RULE_SETUP | #line 8 "conftest.l" | { BEGIN INITIAL; } | YY_BREAK | case 8: | YY_RULE_SETUP | #line 9 "conftest.l" | ECHO; | YY_BREAK | #line 790 "lex.yy.c" | case YY_STATE_EOF(INITIAL): | yyterminate(); | | case YY_END_OF_BUFFER: | { | /* Amount of text matched not including the EOB char. */ | int yy_amount_of_matched_text = (int) (yy_cp - (yytext_ptr)) - 1; | | /* Undo the effects of YY_DO_BEFORE_ACTION. */ | *yy_cp = (yy_hold_char); | YY_RESTORE_YY_MORE_OFFSET | | if ( YY_CURRENT_BUFFER_LVALUE->yy_buffer_status == YY_BUFFER_NEW ) | { | /* We're scanning a new file or input source. It's | * possible that this happened because the user | * just pointed yyin at a new source and called | * yylex(). If so, then we have to assure | * consistency between YY_CURRENT_BUFFER and our | * globals. Here is the right place to do so, because | * this is the first action (other than possibly a | * back-up) that will match for the new input source. | */ | (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_n_chars; | YY_CURRENT_BUFFER_LVALUE->yy_input_file = yyin; | YY_CURRENT_BUFFER_LVALUE->yy_buffer_status = YY_BUFFER_NORMAL; | } | | /* Note that here we test for yy_c_buf_p "<=" to the position | * of the first EOB in the buffer, since yy_c_buf_p will | * already have been incremented past the NUL character | * (since all states make transitions on EOB to the | * end-of-buffer state). Contrast this with the test | * in input(). | */ | if ( (yy_c_buf_p) <= &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)] ) | { /* This was really a NUL. */ | yy_state_type yy_next_state; | | (yy_c_buf_p) = (yytext_ptr) + yy_amount_of_matched_text; | | yy_current_state = yy_get_previous_state( ); | | /* Okay, we're now positioned to make the NUL | * transition. We couldn't have | * yy_get_previous_state() go ahead and do it | * for us because it doesn't know how to deal | * with the possibility of jamming (and we don't | * want to build jamming into it because then it | * will run more slowly). | */ | | yy_next_state = yy_try_NUL_trans( yy_current_state ); | | yy_bp = (yytext_ptr) + YY_MORE_ADJ; | | if ( yy_next_state ) | { | /* Consume the NUL. */ | yy_cp = ++(yy_c_buf_p); | yy_current_state = yy_next_state; | goto yy_match; | } | | else | { | yy_cp = (yy_c_buf_p); | goto yy_find_action; | } | } | | else switch ( yy_get_next_buffer( ) ) | { | case EOB_ACT_END_OF_FILE: | { | (yy_did_buffer_switch_on_eof) = 0; | | if ( yywrap( ) ) | { | /* Note: because we've taken care in | * yy_get_next_buffer() to have set up | * yytext, we can now set up | * yy_c_buf_p so that if some total | * hoser (like flex itself) wants to | * call the scanner after we return the | * YY_NULL, it'll still work - another | * YY_NULL will get returned. | */ | (yy_c_buf_p) = (yytext_ptr) + YY_MORE_ADJ; | | yy_act = YY_STATE_EOF(YY_START); | goto do_action; | } | | else | { | if ( ! (yy_did_buffer_switch_on_eof) ) | YY_NEW_FILE; | } | break; | } | | case EOB_ACT_CONTINUE_SCAN: | (yy_c_buf_p) = | (yytext_ptr) + yy_amount_of_matched_text; | | yy_current_state = yy_get_previous_state( ); | | yy_cp = (yy_c_buf_p); | yy_bp = (yytext_ptr) + YY_MORE_ADJ; | goto yy_match; | | case EOB_ACT_LAST_MATCH: | (yy_c_buf_p) = | &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)]; | | yy_current_state = yy_get_previous_state( ); | | yy_cp = (yy_c_buf_p); | yy_bp = (yytext_ptr) + YY_MORE_ADJ; | goto yy_find_action; | } | break; | } | | default: | YY_FATAL_ERROR( | "fatal flex scanner internal error--no action found" ); | } /* end of action switch */ | } /* end of scanning one token */ | } /* end of yylex */ | | /* yy_get_next_buffer - try to read in a new buffer | * | * Returns a code representing an action: | * EOB_ACT_LAST_MATCH - | * EOB_ACT_CONTINUE_SCAN - continue scanning from current position | * EOB_ACT_END_OF_FILE - end of file | */ | static int yy_get_next_buffer (void) | { | register char *dest = YY_CURRENT_BUFFER_LVALUE->yy_ch_buf; | register char *source = (yytext_ptr); | register int number_to_move, i; | int ret_val; | | if ( (yy_c_buf_p) > &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars) + 1] ) | YY_FATAL_ERROR( | "fatal flex scanner internal error--end of buffer missed" ); | | if ( YY_CURRENT_BUFFER_LVALUE->yy_fill_buffer == 0 ) | { /* Don't try to fill the buffer, so this is an EOF. */ | if ( (yy_c_buf_p) - (yytext_ptr) - YY_MORE_ADJ == 1 ) | { | /* We matched a single character, the EOB, so | * treat this as a final EOF. | */ | return EOB_ACT_END_OF_FILE; | } | | else | { | /* We matched some text prior to the EOB, first | * process it. | */ | return EOB_ACT_LAST_MATCH; | } | } | | /* Try to read more data. */ | | /* First move last chars to start of buffer. */ | number_to_move = (int) ((yy_c_buf_p) - (yytext_ptr)) - 1; | | for ( i = 0; i < number_to_move; ++i ) | *(dest++) = *(source++); | | if ( YY_CURRENT_BUFFER_LVALUE->yy_buffer_status == YY_BUFFER_EOF_PENDING ) | /* don't do the read, it's not guaranteed to return an EOF, | * just force an EOF | */ | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars) = 0; | | else | { | int num_to_read = | YY_CURRENT_BUFFER_LVALUE->yy_buf_size - number_to_move - 1; | | while ( num_to_read <= 0 ) | { /* Not enough room in the buffer - grow it. */ | | YY_FATAL_ERROR( | "input buffer overflow, can't enlarge buffer because scanner uses REJECT" ); | | } | | if ( num_to_read > YY_READ_BUF_SIZE ) | num_to_read = YY_READ_BUF_SIZE; | | /* Read in more data. */ | YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), | (yy_n_chars), (size_t) num_to_read ); | | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars); | } | | if ( (yy_n_chars) == 0 ) | { | if ( number_to_move == YY_MORE_ADJ ) | { | ret_val = EOB_ACT_END_OF_FILE; | yyrestart(yyin ); | } | | else | { | ret_val = EOB_ACT_LAST_MATCH; | YY_CURRENT_BUFFER_LVALUE->yy_buffer_status = | YY_BUFFER_EOF_PENDING; | } | } | | else | ret_val = EOB_ACT_CONTINUE_SCAN; | | if ((yy_size_t) ((yy_n_chars) + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) { | /* Extend the array by 50%, plus the number we really need. */ | yy_size_t new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); | YY_CURRENT_BUFFER_LVALUE->yy_ch_buf = (char *) yyrealloc((void *) YY_CURRENT_BUFFER_LVALUE->yy_ch_buf,new_size ); | if ( ! YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) | YY_FATAL_ERROR( "out of dynamic memory in yy_get_next_buffer()" ); | } | | (yy_n_chars) += number_to_move; | YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)] = YY_END_OF_BUFFER_CHAR; | YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars) + 1] = YY_END_OF_BUFFER_CHAR; | | (yytext_ptr) = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[0]; | | return ret_val; | } | | /* yy_get_previous_state - get the state just before the EOB char was reached */ | | static yy_state_type yy_get_previous_state (void) | { | register yy_state_type yy_current_state; | register char *yy_cp; | | yy_current_state = (yy_start); | | (yy_state_ptr) = (yy_state_buf); | *(yy_state_ptr)++ = yy_current_state; | | for ( yy_cp = (yytext_ptr) + YY_MORE_ADJ; yy_cp < (yy_c_buf_p); ++yy_cp ) | { | register YY_CHAR yy_c = (*yy_cp ? yy_ec[YY_SC_TO_UI(*yy_cp)] : 1); | while ( yy_chk[yy_base[yy_current_state] + yy_c] != yy_current_state ) | { | yy_current_state = (int) yy_def[yy_current_state]; | if ( yy_current_state >= 13 ) | yy_c = yy_meta[(unsigned int) yy_c]; | } | yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; | *(yy_state_ptr)++ = yy_current_state; | } | | return yy_current_state; | } | | /* yy_try_NUL_trans - try to make a transition on the NUL character | * | * synopsis | * next_state = yy_try_NUL_trans( current_state ); | */ | static yy_state_type yy_try_NUL_trans (yy_state_type yy_current_state ) | { | register int yy_is_jam; | | register YY_CHAR yy_c = 1; | while ( yy_chk[yy_base[yy_current_state] + yy_c] != yy_current_state ) | { | yy_current_state = (int) yy_def[yy_current_state]; | if ( yy_current_state >= 13 ) | yy_c = yy_meta[(unsigned int) yy_c]; | } | yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; | yy_is_jam = (yy_current_state == 12); | if ( ! yy_is_jam ) | *(yy_state_ptr)++ = yy_current_state; | | return yy_is_jam ? 0 : yy_current_state; | } | | static void yyunput (int c, register char * yy_bp ) | { | register char *yy_cp; | | yy_cp = (yy_c_buf_p); | | /* undo effects of setting up yytext */ | *yy_cp = (yy_hold_char); | | if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) | { /* need to shift things up to make room */ | /* +2 for EOB chars. */ | register int number_to_move = (yy_n_chars) + 2; | register char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ | YY_CURRENT_BUFFER_LVALUE->yy_buf_size + 2]; | register char *source = | &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]; | | while ( source > YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) | *--dest = *--source; | | yy_cp += (int) (dest - source); | yy_bp += (int) (dest - source); | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = | (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_buf_size; | | if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) | YY_FATAL_ERROR( "flex scanner push-back overflow" ); | } | | *--yy_cp = (char) c; | | (yytext_ptr) = yy_bp; | (yy_hold_char) = *yy_cp; | (yy_c_buf_p) = yy_cp; | } | | #ifndef YY_NO_INPUT | #ifdef __cplusplus | static int yyinput (void) | #else | static int input (void) | #endif | | { | int c; | | *(yy_c_buf_p) = (yy_hold_char); | | if ( *(yy_c_buf_p) == YY_END_OF_BUFFER_CHAR ) | { | /* yy_c_buf_p now points to the character we want to return. | * If this occurs *before* the EOB characters, then it's a | * valid NUL; if not, then we've hit the end of the buffer. | */ | if ( (yy_c_buf_p) < &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)] ) | /* This was really a NUL. */ | *(yy_c_buf_p) = '\0'; | | else | { /* need more input */ | int offset = (yy_c_buf_p) - (yytext_ptr); | ++(yy_c_buf_p); | | switch ( yy_get_next_buffer( ) ) | { | case EOB_ACT_LAST_MATCH: | /* This happens because yy_g_n_b() | * sees that we've accumulated a | * token and flags that we need to | * try matching the token before | * proceeding. But for input(), | * there's no matching to consider. | * So convert the EOB_ACT_LAST_MATCH | * to EOB_ACT_END_OF_FILE. | */ | | /* Reset buffer status. */ | yyrestart(yyin ); | | /*FALLTHROUGH*/ | | case EOB_ACT_END_OF_FILE: | { | if ( yywrap( ) ) | return EOF; | | if ( ! (yy_did_buffer_switch_on_eof) ) | YY_NEW_FILE; | #ifdef __cplusplus | return yyinput(); | #else | return input(); | #endif | } | | case EOB_ACT_CONTINUE_SCAN: | (yy_c_buf_p) = (yytext_ptr) + offset; | break; | } | } | } | | c = *(unsigned char *) (yy_c_buf_p); /* cast for 8-bit char's */ | *(yy_c_buf_p) = '\0'; /* preserve yytext */ | (yy_hold_char) = *++(yy_c_buf_p); | | return c; | } | #endif /* ifndef YY_NO_INPUT */ | | /** Immediately switch to a different input stream. | * @param input_file A readable stream. | * | * @note This function does not reset the start condition to @c INITIAL . | */ | void yyrestart (FILE * input_file ) | { | | if ( ! YY_CURRENT_BUFFER ){ | yyensure_buffer_stack (); | YY_CURRENT_BUFFER_LVALUE = | yy_create_buffer(yyin,YY_BUF_SIZE ); | } | | yy_init_buffer(YY_CURRENT_BUFFER,input_file ); | yy_load_buffer_state( ); | } | | /** Switch to a different input buffer. | * @param new_buffer The new input buffer. | * | */ | void yy_switch_to_buffer (YY_BUFFER_STATE new_buffer ) | { | | /* TODO. We should be able to replace this entire function body | * with | * yypop_buffer_state(); | * yypush_buffer_state(new_buffer); | */ | yyensure_buffer_stack (); | if ( YY_CURRENT_BUFFER == new_buffer ) | return; | | if ( YY_CURRENT_BUFFER ) | { | /* Flush out information for old buffer. */ | *(yy_c_buf_p) = (yy_hold_char); | YY_CURRENT_BUFFER_LVALUE->yy_buf_pos = (yy_c_buf_p); | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars); | } | | YY_CURRENT_BUFFER_LVALUE = new_buffer; | yy_load_buffer_state( ); | | /* We don't actually know whether we did this switch during | * EOF (yywrap()) processing, but the only time this flag | * is looked at is after yywrap() is called, so it's safe | * to go ahead and always set it. | */ | (yy_did_buffer_switch_on_eof) = 1; | } | | static void yy_load_buffer_state (void) | { | (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_n_chars; | (yytext_ptr) = (yy_c_buf_p) = YY_CURRENT_BUFFER_LVALUE->yy_buf_pos; | yyin = YY_CURRENT_BUFFER_LVALUE->yy_input_file; | (yy_hold_char) = *(yy_c_buf_p); | } | | /** Allocate and initialize an input buffer state. | * @param file A readable stream. | * @param size The character buffer size in bytes. When in doubt, use @c YY_BUF_SIZE. | * | * @return the allocated buffer state. | */ | YY_BUFFER_STATE yy_create_buffer (FILE * file, int size ) | { | YY_BUFFER_STATE b; | | b = (YY_BUFFER_STATE) yyalloc(sizeof( struct yy_buffer_state ) ); | if ( ! b ) | YY_FATAL_ERROR( "out of dynamic memory in yy_create_buffer()" ); | | b->yy_buf_size = size; | | /* yy_ch_buf has to be 2 characters longer than the size given because | * we need to put in 2 end-of-buffer characters. | */ | b->yy_ch_buf = (char *) yyalloc(b->yy_buf_size + 2 ); | if ( ! b->yy_ch_buf ) | YY_FATAL_ERROR( "out of dynamic memory in yy_create_buffer()" ); | | b->yy_is_our_buffer = 1; | | yy_init_buffer(b,file ); | | return b; | } | | /** Destroy the buffer. | * @param b a buffer created with yy_create_buffer() | * | */ | void yy_delete_buffer (YY_BUFFER_STATE b ) | { | | if ( ! b ) | return; | | if ( b == YY_CURRENT_BUFFER ) /* Not sure if we should pop here. */ | YY_CURRENT_BUFFER_LVALUE = (YY_BUFFER_STATE) 0; | | if ( b->yy_is_our_buffer ) | yyfree((void *) b->yy_ch_buf ); | | yyfree((void *) b ); | } | | #ifndef _UNISTD_H /* assume unistd.h has isatty() for us */ | #ifdef __cplusplus | extern "C" { | #endif | #ifdef __THROW /* this is a gnuism */ | extern int isatty (int ) __THROW; | #else | extern int isatty (int ); | #endif | #ifdef __cplusplus | } | #endif | #endif | | /* Initializes or reinitializes a buffer. | * This function is sometimes called more than once on the same buffer, | * such as during a yyrestart() or at EOF. | */ | static void yy_init_buffer (YY_BUFFER_STATE b, FILE * file ) | | { | int oerrno = errno; | | yy_flush_buffer(b ); | | b->yy_input_file = file; | b->yy_fill_buffer = 1; | | /* If b is the current buffer, then yy_init_buffer was _probably_ | * called from yyrestart() or through yy_get_next_buffer. | * In that case, we don't want to reset the lineno or column. | */ | if (b != YY_CURRENT_BUFFER){ | b->yy_bs_lineno = 1; | b->yy_bs_column = 0; | } | | b->yy_is_interactive = file ? (isatty( fileno(file) ) > 0) : 0; | | errno = oerrno; | } | | /** Discard all buffered characters. On the next scan, YY_INPUT will be called. | * @param b the buffer state to be flushed, usually @c YY_CURRENT_BUFFER. | * | */ | void yy_flush_buffer (YY_BUFFER_STATE b ) | { | if ( ! b ) | return; | | b->yy_n_chars = 0; | | /* We always need two end-of-buffer characters. The first causes | * a transition to the end-of-buffer state. The second causes | * a jam in that state. | */ | b->yy_ch_buf[0] = YY_END_OF_BUFFER_CHAR; | b->yy_ch_buf[1] = YY_END_OF_BUFFER_CHAR; | | b->yy_buf_pos = &b->yy_ch_buf[0]; | | b->yy_at_bol = 1; | b->yy_buffer_status = YY_BUFFER_NEW; | | if ( b == YY_CURRENT_BUFFER ) | yy_load_buffer_state( ); | } | | /** Pushes the new state onto the stack. The new state becomes | * the current state. This function will allocate the stack | * if necessary. | * @param new_buffer The new state. | * | */ | void yypush_buffer_state (YY_BUFFER_STATE new_buffer ) | { | if (new_buffer == NULL) | return; | | yyensure_buffer_stack(); | | /* This block is copied from yy_switch_to_buffer. */ | if ( YY_CURRENT_BUFFER ) | { | /* Flush out information for old buffer. */ | *(yy_c_buf_p) = (yy_hold_char); | YY_CURRENT_BUFFER_LVALUE->yy_buf_pos = (yy_c_buf_p); | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars); | } | | /* Only push if top exists. Otherwise, replace top. */ | if (YY_CURRENT_BUFFER) | (yy_buffer_stack_top)++; | YY_CURRENT_BUFFER_LVALUE = new_buffer; | | /* copied from yy_switch_to_buffer. */ | yy_load_buffer_state( ); | (yy_did_buffer_switch_on_eof) = 1; | } | | /** Removes and deletes the top of the stack, if present. | * The next element becomes the new top. | * | */ | void yypop_buffer_state (void) | { | if (!YY_CURRENT_BUFFER) | return; | | yy_delete_buffer(YY_CURRENT_BUFFER ); | YY_CURRENT_BUFFER_LVALUE = NULL; | if ((yy_buffer_stack_top) > 0) | --(yy_buffer_stack_top); | | if (YY_CURRENT_BUFFER) { | yy_load_buffer_state( ); | (yy_did_buffer_switch_on_eof) = 1; | } | } | | /* Allocates the stack if it does not exist. | * Guarantees space for at least one push. | */ | static void yyensure_buffer_stack (void) | { | int num_to_alloc; | | if (!(yy_buffer_stack)) { | | /* First allocation is just for 2 elements, since we don't know if this | * scanner will even need a stack. We use 2 instead of 1 to avoid an | * immediate realloc on the next call. | */ | num_to_alloc = 1; | (yy_buffer_stack) = (struct yy_buffer_state**)yyalloc | (num_to_alloc * sizeof(struct yy_buffer_state*) | ); | if ( ! (yy_buffer_stack) ) | YY_FATAL_ERROR( "out of dynamic memory in yyensure_buffer_stack()" ); | | memset((yy_buffer_stack), 0, num_to_alloc * sizeof(struct yy_buffer_state*)); | | (yy_buffer_stack_max) = num_to_alloc; | (yy_buffer_stack_top) = 0; | return; | } | | if ((yy_buffer_stack_top) >= ((yy_buffer_stack_max)) - 1){ | | /* Increase the buffer to prepare for a possible push. */ | int grow_size = 8 /* arbitrary grow size */; | | num_to_alloc = (yy_buffer_stack_max) + grow_size; | (yy_buffer_stack) = (struct yy_buffer_state**)yyrealloc | ((yy_buffer_stack), | num_to_alloc * sizeof(struct yy_buffer_state*) | ); | if ( ! (yy_buffer_stack) ) | YY_FATAL_ERROR( "out of dynamic memory in yyensure_buffer_stack()" ); | | /* zero only the new slots.*/ | memset((yy_buffer_stack) + (yy_buffer_stack_max), 0, grow_size * sizeof(struct yy_buffer_state*)); | (yy_buffer_stack_max) = num_to_alloc; | } | } | | /** Setup the input buffer state to scan directly from a user-specified character buffer. | * @param base the character buffer | * @param size the size in bytes of the character buffer | * | * @return the newly allocated buffer state object. | */ | YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) | { | YY_BUFFER_STATE b; | | if ( size < 2 || | base[size-2] != YY_END_OF_BUFFER_CHAR || | base[size-1] != YY_END_OF_BUFFER_CHAR ) | /* They forgot to leave room for the EOB's. */ | return 0; | | b = (YY_BUFFER_STATE) yyalloc(sizeof( struct yy_buffer_state ) ); | if ( ! b ) | YY_FATAL_ERROR( "out of dynamic memory in yy_scan_buffer()" ); | | b->yy_buf_size = size - 2; /* "- 2" to take care of EOB's */ | b->yy_buf_pos = b->yy_ch_buf = base; | b->yy_is_our_buffer = 0; | b->yy_input_file = 0; | b->yy_n_chars = b->yy_buf_size; | b->yy_is_interactive = 0; | b->yy_at_bol = 1; | b->yy_fill_buffer = 0; | b->yy_buffer_status = YY_BUFFER_NEW; | | yy_switch_to_buffer(b ); | | return b; | } | | /** Setup the input buffer state to scan a string. The next call to yylex() will | * scan from a @e copy of @a str. | * @param yystr a NUL-terminated string to scan | * | * @return the newly allocated buffer state object. | * @note If you want to scan bytes that may contain NUL values, then use | * yy_scan_bytes() instead. | */ | YY_BUFFER_STATE yy_scan_string (yyconst char * yystr ) | { | | return yy_scan_bytes(yystr,strlen(yystr) ); | } | | /** Setup the input buffer state to scan the given bytes. The next call to yylex() will | * scan from a @e copy of @a bytes. | * @param bytes the byte buffer to scan | * @param len the number of bytes in the buffer pointed to by @a bytes. | * | * @return the newly allocated buffer state object. | */ | YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, int _yybytes_len ) | { | YY_BUFFER_STATE b; | char *buf; | yy_size_t n; | int i; | | /* Get memory for full buffer, including space for trailing EOB's. */ | n = _yybytes_len + 2; | buf = (char *) yyalloc(n ); | if ( ! buf ) | YY_FATAL_ERROR( "out of dynamic memory in yy_scan_bytes()" ); | | for ( i = 0; i < _yybytes_len; ++i ) | buf[i] = yybytes[i]; | | buf[_yybytes_len] = buf[_yybytes_len+1] = YY_END_OF_BUFFER_CHAR; | | b = yy_scan_buffer(buf,n ); | if ( ! b ) | YY_FATAL_ERROR( "bad buffer in yy_scan_bytes()" ); | | /* It's okay to grow etc. this buffer, and we should throw it | * away when we're done. | */ | b->yy_is_our_buffer = 1; | | return b; | } | | #ifndef YY_EXIT_FAILURE | #define YY_EXIT_FAILURE 2 | #endif | | static void yy_fatal_error (yyconst char* msg ) | { | (void) fprintf( stderr, "%s\n", msg ); | exit( YY_EXIT_FAILURE ); | } | | /* Redefine yyless() so it works in section 3 code. */ | | #undef yyless | #define yyless(n) \ | do \ | { \ | /* Undo effects of setting up yytext. */ \ | int yyless_macro_arg = (n); \ | YY_LESS_LINENO(yyless_macro_arg);\ | yytext[yyleng] = (yy_hold_char); \ | (yy_c_buf_p) = yytext + yyless_macro_arg; \ | (yy_hold_char) = *(yy_c_buf_p); \ | *(yy_c_buf_p) = '\0'; \ | yyleng = yyless_macro_arg; \ | } \ | while ( 0 ) | | /* Accessor methods (get/set functions) to struct members. */ | | /** Get the current line number. | * | */ | int yyget_lineno (void) | { | | return yylineno; | } | | /** Get the input stream. | * | */ | FILE *yyget_in (void) | { | return yyin; | } | | /** Get the output stream. | * | */ | FILE *yyget_out (void) | { | return yyout; | } | | /** Get the length of the current token. | * | */ | int yyget_leng (void) | { | return yyleng; | } | | /** Get the current token. | * | */ | | char *yyget_text (void) | { | return yytext; | } | | /** Set the current line number. | * @param line_number | * | */ | void yyset_lineno (int line_number ) | { | | yylineno = line_number; | } | | /** Set the input stream. This does not discard the current | * input buffer. | * @param in_str A readable stream. | * | * @see yy_switch_to_buffer | */ | void yyset_in (FILE * in_str ) | { | yyin = in_str ; | } | | void yyset_out (FILE * out_str ) | { | yyout = out_str ; | } | | int yyget_debug (void) | { | return yy_flex_debug; | } | | void yyset_debug (int bdebug ) | { | yy_flex_debug = bdebug ; | } | | static int yy_init_globals (void) | { | /* Initialization is the same as for the non-reentrant scanner. | * This function is called from yylex_destroy(), so don't allocate here. | */ | | (yy_buffer_stack) = 0; | (yy_buffer_stack_top) = 0; | (yy_buffer_stack_max) = 0; | (yy_c_buf_p) = (char *) 0; | (yy_init) = 0; | (yy_start) = 0; | | (yy_state_buf) = 0; | (yy_state_ptr) = 0; | (yy_full_match) = 0; | (yy_lp) = 0; | | /* Defined in main.c */ | #ifdef YY_STDINIT | yyin = stdin; | yyout = stdout; | #else | yyin = (FILE *) 0; | yyout = (FILE *) 0; | #endif | | /* For future reference: Set errno on error, since we are called by | * yylex_init() | */ | return 0; | } | | /* yylex_destroy is for both reentrant and non-reentrant scanners. */ | int yylex_destroy (void) | { | | /* Pop the buffer stack, destroying each element. */ | while(YY_CURRENT_BUFFER){ | yy_delete_buffer(YY_CURRENT_BUFFER ); | YY_CURRENT_BUFFER_LVALUE = NULL; | yypop_buffer_state(); | } | | /* Destroy the stack itself. */ | yyfree((yy_buffer_stack) ); | (yy_buffer_stack) = NULL; | | yyfree ( (yy_state_buf) ); | (yy_state_buf) = NULL; | | /* Reset the globals. This is important in a non-reentrant scanner so the next time | * yylex() is called, initialization will occur. */ | yy_init_globals( ); | | return 0; | } | | /* | * Internal utility routines. | */ | | #ifndef yytext_ptr | static void yy_flex_strncpy (char* s1, yyconst char * s2, int n ) | { | register int i; | for ( i = 0; i < n; ++i ) | s1[i] = s2[i]; | } | #endif | | #ifdef YY_NEED_STRLEN | static int yy_flex_strlen (yyconst char * s ) | { | register int n; | for ( n = 0; s[n]; ++n ) | ; | | return n; | } | #endif | | void *yyalloc (yy_size_t size ) | { | return (void *) malloc( size ); | } | | void *yyrealloc (void * ptr, yy_size_t size ) | { | /* The cast to (char *) in the following accommodates both | * implementations that use char* generic pointers, and those | * that use void* generic pointers. It works with the latter | * because both ANSI C and C++ allow castless assignment from | * any pointer type to void*, and deal with argument conversions | * as though doing an assignment. | */ | return (void *) realloc( (char *) ptr, size ); | } | | void yyfree (void * ptr ) | { | free( (char *) ptr ); /* see yyrealloc() for (char *) cast */ | } | | #define YYTABLES_NAME "yytables" | | #line 9 "conftest.l" | | | #ifdef YYTEXT_POINTER | extern char *yytext; | #endif | int | main (void) | { | return ! yylex () + ! yywrap (); | } configure:3459: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c -lfl >&5 lex.yy.c: In function 'yylex': conftest.l:2: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result conftest.l:9: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result configure:3466: $? = 0 configure:3490: result: -lfl configure:3496: checking whether yytext is a pointer configure:3517: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c -lfl >&5 lex.yy.c: In function 'yylex': conftest.l:2: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result conftest.l:9: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result configure:3524: $? = 0 configure:3546: result: yes configure:3558: checking whether ln -s works configure:3562: result: yes configure:3569: checking whether make sets $(MAKE) configure:3591: result: yes configure:3606: checking to see if we need to include the Boost libraries configure:3609: result: yes configure:3619: checking to see if we need to include the Xerces libraries configure:3626: result: no configure:3632: checking to see if we need to include the GMP libraries configure:3639: result: no configure:3674: checking for dirent.h that defines DIR configure:3703: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:3710: $? = 0 configure:3727: result: yes configure:3742: checking for library containing opendir configure:3783: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:3790: $? = 0 configure:3821: result: none required configure:3924: checking how to run the C preprocessor configure:3964: x86_64-pc-linux-gnu-gcc -E conftest.c configure:3971: $? = 0 configure:4002: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:4009: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | /* end confdefs.h. */ | #include configure:4042: result: x86_64-pc-linux-gnu-gcc -E configure:4071: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4078: $? = 0 configure:4109: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:4116: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | /* end confdefs.h. */ | #include configure:4156: checking for grep that handles long lines and -e configure:4216: result: /bin/grep configure:4221: checking for egrep configure:4285: result: /bin/grep -E configure:4290: checking for ANSI C header files configure:4320: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4327: $? = 0 configure:4426: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:4430: $? = 0 configure:4436: ./conftest configure:4440: $? = 0 configure:4458: result: yes configure:4468: checking for sys/wait.h that is POSIX.1 compatible configure:4504: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4511: $? = 0 configure:4526: result: yes configure:4550: checking for sys/types.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for sys/stat.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for stdlib.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for string.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for memory.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for strings.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for inttypes.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for stdint.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4550: checking for unistd.h configure:4571: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4578: $? = 0 configure:4595: result: yes configure:4639: checking fcntl.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking fcntl.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for fcntl.h configure:4759: result: yes configure:4639: checking float.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking float.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for float.h configure:4759: result: yes configure:4639: checking limits.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking limits.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for limits.h configure:4759: result: yes configure:4639: checking locale.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking locale.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for locale.h configure:4759: result: yes configure:4628: checking for memory.h configure:4635: result: yes configure:4639: checking netinet/in.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking netinet/in.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for netinet/in.h configure:4759: result: yes configure:4639: checking stddef.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking stddef.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for stddef.h configure:4759: result: yes configure:4628: checking for stdlib.h configure:4635: result: yes configure:4628: checking for string.h configure:4635: result: yes configure:4628: checking for strings.h configure:4635: result: yes configure:4639: checking sys/file.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking sys/file.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for sys/file.h configure:4759: result: yes configure:4639: checking sys/param.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking sys/param.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for sys/param.h configure:4759: result: yes configure:4639: checking sys/time.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking sys/time.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for sys/time.h configure:4759: result: yes configure:4628: checking for unistd.h configure:4635: result: yes configure:4639: checking wchar.h usability configure:4656: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:4663: $? = 0 configure:4677: result: yes configure:4681: checking wchar.h presence configure:4696: x86_64-pc-linux-gnu-gcc -E conftest.c configure:4703: $? = 0 configure:4717: result: yes configure:4750: checking for wchar.h configure:4759: result: yes configure:4795: VENDOR wasn't set, setting to a default configure:4847: checking for getline in -lm configure:4882: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c -lm >&5 configure:4889: $? = 0 configure:4910: result: yes configure:4936: checking for stdbool.h that conforms to C99 configure:5031: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5038: $? = 0 configure:5053: result: yes configure:5055: checking for _Bool configure:5083: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5090: $? = 0 configure:5117: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:73: error: expected expression before ')' token configure:5124: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:5147: result: yes configure:5166: checking for an ANSI C-conforming const configure:5241: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5248: $? = 0 configure:5263: result: yes configure:5273: checking for inline configure:5299: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5306: $? = 0 configure:5324: result: inline configure:5343: checking for mode_t configure:5371: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5378: $? = 0 configure:5405: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:75: error: expected expression before ')' token configure:5412: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((mode_t))) | return 0; | ; | return 0; | } configure:5435: result: yes configure:5447: checking for off_t configure:5475: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5482: $? = 0 configure:5509: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:75: error: expected expression before ')' token configure:5516: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:5539: result: yes configure:5551: checking for pid_t configure:5579: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5586: $? = 0 configure:5613: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:75: error: expected expression before ')' token configure:5620: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((pid_t))) | return 0; | ; | return 0; | } configure:5643: result: yes configure:5655: checking for C/C++ restrict keyword configure:5690: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5697: $? = 0 configure:5715: result: __restrict configure:5731: checking for size_t configure:5759: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5766: $? = 0 configure:5793: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:76: error: expected expression before ')' token configure:5800: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:5823: result: yes configure:5835: checking for ssize_t configure:5863: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5870: $? = 0 configure:5897: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:76: error: expected expression before ')' token configure:5904: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:5927: result: yes configure:5939: checking whether time.h and sys/time.h may both be included configure:5969: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:5976: $? = 0 configure:5991: result: yes configure:6001: checking whether struct tm is in sys/time.h or time.h configure:6031: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6038: $? = 0 configure:6053: result: time.h configure:6064: checking for uint16_t configure:6095: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6102: $? = 0 configure:6123: result: yes configure:6137: checking for uint32_t configure:6168: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6175: $? = 0 configure:6196: result: yes configure:6214: checking for uint64_t configure:6245: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6252: $? = 0 configure:6273: result: yes configure:6291: checking for uint8_t configure:6322: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6329: $? = 0 configure:6350: result: yes configure:6367: checking for working volatile configure:6396: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6403: $? = 0 configure:6418: result: yes configure:6428: checking for ptrdiff_t configure:6456: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6463: $? = 0 configure:6490: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:77: error: expected expression before ')' token configure:6497: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:6520: result: yes configure:6531: checking for ulong configure:6559: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:6566: $? = 0 configure:6593: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:78: error: expected expression before ')' token configure:6600: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ulong))) | return 0; | ; | return 0; | } configure:6623: result: yes configure:6635: checking whether closedir returns void configure:6669: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:6673: $? = 0 configure:6679: ./conftest configure:6683: $? = 0 configure:6700: result: no configure:6710: checking for error_at_line configure:6736: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:6743: $? = 0 configure:6763: result: yes configure:6790: checking vfork.h usability configure:6807: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c:76:19: error: vfork.h: No such file or directory configure:6814: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:6828: result: no configure:6832: checking vfork.h presence configure:6847: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:43:19: error: vfork.h: No such file or directory configure:6854: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | /* end confdefs.h. */ | #include configure:6868: result: no configure:6901: checking for vfork.h configure:6910: result: no configure:6930: checking for fork configure:6986: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:66: warning: conflicting types for built-in function 'fork' configure:6993: $? = 0 configure:7015: result: yes configure:6930: checking for vfork configure:6986: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:6993: $? = 0 configure:7015: result: yes configure:7028: checking for working fork configure:7060: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:7064: $? = 0 configure:7070: ./conftest configure:7074: $? = 0 configure:7091: result: yes configure:7112: checking for working vfork configure:7253: result: yes configure:7285: checking whether x86_64-pc-linux-gnu-gcc needs -traditional configure:7327: result: no configure:7334: checking whether lstat dereferences a symlink specified with a trailing slash configure:7370: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:7374: $? = 0 configure:7380: ./conftest configure:7384: $? = 0 configure:7408: result: yes configure:7427: checking whether lstat accepts an empty string configure:7457: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:7461: $? = 0 configure:7467: ./conftest configure:7471: $? = 0 configure:7488: result: no configure:7504: checking whether lstat dereferences a symlink specified with a trailing slash configure:7578: result: yes configure:7602: checking for stdlib.h configure:7609: result: yes configure:7748: checking for GNU libc compatible malloc configure:7782: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:7786: $? = 0 configure:7792: ./conftest configure:7796: $? = 0 configure:7813: result: yes configure:7841: checking for working memcmp configure:7894: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:7898: $? = 0 configure:7904: ./conftest configure:7908: $? = 0 configure:7925: result: yes configure:7940: checking for stdlib.h configure:7947: result: yes configure:7940: checking for unistd.h configure:7947: result: yes configure:8090: checking for getpagesize configure:8146: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:8153: $? = 0 configure:8175: result: yes configure:8187: checking for working mmap configure:8334: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:8338: $? = 0 configure:8344: ./conftest configure:8348: $? = 0 configure:8365: result: yes configure:8381: checking for stdlib.h configure:8388: result: yes configure:8527: checking for GNU libc compatible realloc configure:8561: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:8565: $? = 0 configure:8571: ./conftest configure:8575: $? = 0 configure:8592: result: yes configure:8637: checking sys/select.h usability configure:8654: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:8661: $? = 0 configure:8675: result: yes configure:8679: checking sys/select.h presence configure:8694: x86_64-pc-linux-gnu-gcc -E conftest.c configure:8701: $? = 0 configure:8715: result: yes configure:8748: checking for sys/select.h configure:8757: result: yes configure:8637: checking sys/socket.h usability configure:8654: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:8661: $? = 0 configure:8675: result: yes configure:8679: checking sys/socket.h presence configure:8694: x86_64-pc-linux-gnu-gcc -E conftest.c configure:8701: $? = 0 configure:8715: result: yes configure:8748: checking for sys/socket.h configure:8757: result: yes configure:8772: checking types of arguments for select configure:8810: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 configure:8817: $? = 0 configure:8838: result: int,fd_set *,struct timeval * configure:8861: checking return type of signal handlers configure:8889: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=nocona conftest.c >&5 conftest.c: In function 'main': conftest.c:68: error: void value not ignored as it ought to be configure:8896: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | /* end confdefs.h. */ | #include | #include | | int | main () | { | return *(signal (0, 0)) (0) == 1; | ; | return 0; | } configure:8911: result: void configure:8919: checking whether stat accepts an empty string configure:8949: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:8953: $? = 0 configure:8959: ./conftest configure:8963: $? = 0 configure:8980: result: no configure:9000: checking for strftime configure:9056: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:86: warning: conflicting types for built-in function 'strftime' configure:9063: $? = 0 configure:9085: result: yes configure:9211: checking for alarm configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for atexit configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for bzero configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:89: warning: conflicting types for built-in function 'bzero' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for dup2 configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for floor configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:91: warning: conflicting types for built-in function 'floor' /var/tmp/portage/sci-biology/vaal-1.2-r1/temp/ccuHTMG1.o: In function `main': conftest.c:(.text+0x7): undefined reference to `floor' collect2: ld returned 1 exit status configure:9274: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_STRFTIME 1 | #define HAVE_ALARM 1 | #define HAVE_ATEXIT 1 | #define HAVE_BZERO 1 | #define HAVE_DUP2 1 | /* end confdefs.h. */ | /* Define floor to an innocuous variant, in case declares floor. | For example, HP-UX 11i declares gettimeofday. */ | #define floor innocuous_floor | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char floor (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef floor | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char floor (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_floor || defined __stub___floor | choke me | #endif | | int | main () | { | return floor (); | ; | return 0; | } configure:9296: result: no configure:9211: checking for ftruncate configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for getcwd configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for gethostname configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for getpagesize configure:9296: result: yes configure:9211: checking for gettimeofday configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for memchr configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:96: warning: conflicting types for built-in function 'memchr' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for memmove configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:97: warning: conflicting types for built-in function 'memmove' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for memset configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:98: warning: conflicting types for built-in function 'memset' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for mkdir configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for mkfifo configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for munmap configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for pow configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:102: warning: conflicting types for built-in function 'pow' /var/tmp/portage/sci-biology/vaal-1.2-r1/temp/ccqccPkO.o: In function `main': conftest.c:(.text+0x7): undefined reference to `pow' collect2: ld returned 1 exit status configure:9274: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_STRFTIME 1 | #define HAVE_ALARM 1 | #define HAVE_ATEXIT 1 | #define HAVE_BZERO 1 | #define HAVE_DUP2 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_MEMCHR 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MKFIFO 1 | #define HAVE_MUNMAP 1 | /* end confdefs.h. */ | /* Define pow to an innocuous variant, in case declares pow. | For example, HP-UX 11i declares gettimeofday. */ | #define pow innocuous_pow | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pow (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pow | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pow (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pow || defined __stub___pow | choke me | #endif | | int | main () | { | return pow (); | ; | return 0; | } configure:9296: result: no configure:9211: checking for putenv configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for realpath configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for regcomp configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for rint configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:105: warning: conflicting types for built-in function 'rint' /var/tmp/portage/sci-biology/vaal-1.2-r1/temp/cc5uPDA5.o: In function `main': conftest.c:(.text+0x7): undefined reference to `rint' collect2: ld returned 1 exit status configure:9274: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_STRFTIME 1 | #define HAVE_ALARM 1 | #define HAVE_ATEXIT 1 | #define HAVE_BZERO 1 | #define HAVE_DUP2 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_MEMCHR 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MKFIFO 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_REALPATH 1 | #define HAVE_REGCOMP 1 | /* end confdefs.h. */ | /* Define rint to an innocuous variant, in case declares rint. | For example, HP-UX 11i declares gettimeofday. */ | #define rint innocuous_rint | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char rint (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef rint | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rint (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_rint || defined __stub___rint | choke me | #endif | | int | main () | { | return rint (); | ; | return 0; | } configure:9296: result: no configure:9211: checking for rmdir configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for select configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for setenv configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for setlocale configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for sqrt configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:109: warning: conflicting types for built-in function 'sqrt' /var/tmp/portage/sci-biology/vaal-1.2-r1/temp/ccdjzX3j.o: In function `main': conftest.c:(.text+0x7): undefined reference to `sqrt' collect2: ld returned 1 exit status configure:9274: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ARACHNE" | #define PACKAGE_TARNAME "arachne" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "ARACHNE 1.0" | #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" | #define YYTEXT_POINTER 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_WCHAR_H 1 | #define GETLINE_DEFINED 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define restrict __restrict | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define C_ULONG_DEFINED 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_STRFTIME 1 | #define HAVE_ALARM 1 | #define HAVE_ATEXIT 1 | #define HAVE_BZERO 1 | #define HAVE_DUP2 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_MEMCHR 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MKFIFO 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_REALPATH 1 | #define HAVE_REGCOMP 1 | #define HAVE_RMDIR 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETLOCALE 1 | /* end confdefs.h. */ | /* Define sqrt to an innocuous variant, in case declares sqrt. | For example, HP-UX 11i declares gettimeofday. */ | #define sqrt innocuous_sqrt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sqrt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sqrt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sqrt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sqrt || defined __stub___sqrt | choke me | #endif | | int | main () | { | return sqrt (); | ; | return 0; | } configure:9296: result: no configure:9211: checking for strcasecmp configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:109: warning: conflicting types for built-in function 'strcasecmp' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strchr configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:110: warning: conflicting types for built-in function 'strchr' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strdup configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:111: warning: conflicting types for built-in function 'strdup' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strerror configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strncasecmp configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:113: warning: conflicting types for built-in function 'strncasecmp' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strrchr configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:114: warning: conflicting types for built-in function 'strrchr' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strstr configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 conftest.c:115: warning: conflicting types for built-in function 'strstr' configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strtol configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for strtoul configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9211: checking for uname configure:9267: x86_64-pc-linux-gnu-gcc -o conftest -O2 -pipe -march=nocona -Wl,-O1 conftest.c >&5 configure:9274: $? = 0 configure:9296: result: yes configure:9327: checking to see that gcc is at least version 4.3.2 configure:9383: result: Yes, gcc version 4.4.3 is fine configure:9486: checking for boostlib >= 1.37.0 configure:9555: x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=nocona -I/usr/include conftest.cpp >&5 configure:9562: $? = 0 configure:9568: result: yes configure:9820: result: found boost version configure:9868: checking for boost library name configure:9893: result: Failed... configure:9895: Configure failed with the error message: Failed to resolve boost library name configure:9897: configure:9899: Common error conditions in the build process are documented on our wiki page, configure:9901: http://www.broad.mit.edu/crd/wiki/index.php/Build_FAQ configure:9903: We also offer email support at crdhelp@broad.mit.edu configure:9905: error: in `/var/tmp/portage/sci-biology/vaal-1.2-r1/work/VAAL': configure:9908: error: configure failed. See `config.log' for more details. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_c_restrict=__restrict ac_cv_c_uint16_t=yes ac_cv_c_uint32_t=yes ac_cv_c_uint64_t=yes ac_cv_c_uint8_t=yes ac_cv_c_volatile=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-O2 -pipe -march=nocona' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-O2 -pipe -march=nocona' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-Wl,-O1 ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_YACC_set= ac_cv_env_YACC_value= ac_cv_env_YFLAGS_set= ac_cv_env_YFLAGS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-pc-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=x86_64-pc-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_alarm=yes ac_cv_func_atexit=yes ac_cv_func_bzero=yes ac_cv_func_closedir_void=no ac_cv_func_dup2=yes ac_cv_func_floor=no ac_cv_func_fork=yes ac_cv_func_fork_works=yes ac_cv_func_ftruncate=yes ac_cv_func_getcwd=yes ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_gettimeofday=yes ac_cv_func_lstat_dereferences_slashed_symlink=yes ac_cv_func_lstat_empty_string_bug=no ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memchr=yes ac_cv_func_memcmp_working=yes ac_cv_func_memmove=yes ac_cv_func_memset=yes ac_cv_func_mkdir=yes ac_cv_func_mkfifo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_munmap=yes ac_cv_func_pow=no ac_cv_func_putenv=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_realpath=yes ac_cv_func_regcomp=yes ac_cv_func_rint=no ac_cv_func_rmdir=yes ac_cv_func_select=yes ac_cv_func_select_args='int,fd_set *,struct timeval *' ac_cv_func_setenv=yes ac_cv_func_setlocale=yes ac_cv_func_sqrt=no ac_cv_func_stat_empty_string_bug=no ac_cv_func_strcasecmp=yes ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strerror=yes ac_cv_func_strftime=yes ac_cv_func_strncasecmp=yes ac_cv_func_strrchr=yes ac_cv_func_strstr=yes ac_cv_func_strtol=yes ac_cv_func_strtoul=yes ac_cv_func_uname=yes ac_cv_func_vfork=yes ac_cv_func_vfork_works=yes ac_cv_header_dirent_dirent_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_float_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_locale_h=yes ac_cv_header_memory_h=yes ac_cv_header_netinet_in_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_file_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_header_vfork_h=no ac_cv_header_wchar_h=yes ac_cv_lib_error_at_line=yes ac_cv_lib_lex=-lfl ac_cv_lib_m_getline=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_prog_AWK=gawk ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++ ac_cv_prog_LEX=flex ac_cv_prog_YACC='bison -y' ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_gcc_traditional=no ac_cv_prog_lex_root=lex.yy ac_cv_prog_lex_yytext_pointer=yes ac_cv_prog_make_make_set=yes ac_cv_search_opendir='none required' ac_cv_struct_tm=time.h ac_cv_type__Bool=yes ac_cv_type_mode_t=yes ac_cv_type_off_t=yes ac_cv_type_pid_t=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_signal=void ac_cv_type_size_t=yes ac_cv_type_ssize_t=yes ac_cv_type_ulong=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ANN_LFLAGS='' ANN_LIB='' ANN_TARGET='' AWK='gawk' BOOST_INC='-I/usr/include' BOOST_LPATH='-L/usr/lib' BOOST_TAG='' BOOST_VERSION='' CC='x86_64-pc-linux-gnu-gcc' CFLAGS='-O2 -pipe -march=nocona' CPP='x86_64-pc-linux-gnu-gcc -E' CPPFLAGS='' CXX='x86_64-pc-linux-gnu-g++' CXXFLAGS='-O2 -pipe -march=nocona' DEFS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' EXP_BIN='bin' EXP_OBJ='obj' GCC_MAJOR='4' GCC_MAJOR_MINOR='44' GCC_MAJOR_MINOR_RELEASE='443' GMPXX_LFLAGS='' GMPXX_LIB='' GMP_INCLUDE='' GMP_LFLAGS='' GMP_LIB='' GREP='/bin/grep' INCLUDES=' -I/usr/include' LDFLAGS='-Wl,-O1' LEX='flex' LEXLIB='-lfl' LEX_OUTPUT_ROOT='lex.yy' LIBOBJS='' LIBRARIES=' -L/usr/lib' LIBS='' LN_S='ln -s' LTLIBOBJS='' NODE_NAME='454pc' OBJEXT='o' OS_MACHINE='x86_64' OS_NAME='Linux' OS_RELEASE='2.6.32-default' OS_VENDOR='unknown_vendor' PACKAGE_BUGREPORT='CRDHelp@broad.mit.edu' PACKAGE_NAME='ARACHNE' PACKAGE_STRING='ARACHNE 1.0' PACKAGE_TARNAME='arachne' PACKAGE_VERSION='1.0' PATH_SEPARATOR=':' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' SYS_LANG_DEFAULT='-ftemplate-depth-50 -fno-strict-aliasing' SYS_LINK_DEFAULT='' USER='root' WITH_BOOST='yes' WITH_GMP='no' WITH_XERCES='no' XERCES_INCLUDE='' XERCES_LFLAGS='' XERCES_LIB='' YACC='bison -y' YFLAGS='' ac_ct_CC='' ac_ct_CXX='' bindir='${exec_prefix}/bin' build_alias='x86_64-pc-linux-gnu' datadir='/usr/share' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host_alias='x86_64-pc-linux-gnu' htmldir='${docdir}' includedir='${prefix}/include' infodir='/usr/share/info' libdir='/usr/lib64' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var/lib' mandir='/usr/share/man' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "ARACHNE" #define PACKAGE_TARNAME "arachne" #define PACKAGE_VERSION "1.0" #define PACKAGE_STRING "ARACHNE 1.0" #define PACKAGE_BUGREPORT "CRDHelp@broad.mit.edu" #define YYTEXT_POINTER 1 #define HAVE_DIRENT_H 1 #define STDC_HEADERS 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_FCNTL_H 1 #define HAVE_FLOAT_H 1 #define HAVE_LIMITS_H 1 #define HAVE_LOCALE_H 1 #define HAVE_MEMORY_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_UNISTD_H 1 #define HAVE_WCHAR_H 1 #define GETLINE_DEFINED 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define restrict __restrict #define TIME_WITH_SYS_TIME 1 #define HAVE_PTRDIFF_T 1 #define C_ULONG_DEFINED 1 #define HAVE_FORK 1 #define HAVE_VFORK 1 #define HAVE_WORKING_VFORK 1 #define HAVE_WORKING_FORK 1 #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STDLIB_H 1 #define HAVE_REALLOC 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define SELECT_TYPE_ARG1 int #define SELECT_TYPE_ARG234 (fd_set *) #define SELECT_TYPE_ARG5 (struct timeval *) #define RETSIGTYPE void #define HAVE_STRFTIME 1 #define HAVE_ALARM 1 #define HAVE_ATEXIT 1 #define HAVE_BZERO 1 #define HAVE_DUP2 1 #define HAVE_FTRUNCATE 1 #define HAVE_GETCWD 1 #define HAVE_GETHOSTNAME 1 #define HAVE_GETPAGESIZE 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_MEMCHR 1 #define HAVE_MEMMOVE 1 #define HAVE_MEMSET 1 #define HAVE_MKDIR 1 #define HAVE_MKFIFO 1 #define HAVE_MUNMAP 1 #define HAVE_PUTENV 1 #define HAVE_REALPATH 1 #define HAVE_REGCOMP 1 #define HAVE_RMDIR 1 #define HAVE_SELECT 1 #define HAVE_SETENV 1 #define HAVE_SETLOCALE 1 #define HAVE_STRCASECMP 1 #define HAVE_STRCHR 1 #define HAVE_STRDUP 1 #define HAVE_STRERROR 1 #define HAVE_STRNCASECMP 1 #define HAVE_STRRCHR 1 #define HAVE_STRSTR 1 #define HAVE_STRTOL 1 #define HAVE_STRTOUL 1 #define HAVE_UNAME 1 configure: exit 1