Build log

ucsc-genome-browser-223:20100216-184551.log (text/plain), 296.53 KB, created by Diego Elio Pettenò (RETIRED) on 2010-02-17 13:54:20 UTC

 * CPV:  sci-biology/ucsc-genome-browser-223
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux mysql server test userland_GNU x86
>>> Unpacking source...
>>> Unpacking jksrc.v223.zip to /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work
>>> Source unpacked in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work
>>> Preparing source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ...
make -j14 -C src clean 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
cd lib && make clean 
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
rm -f aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o i686/jkweb.a
cd tests && make clean
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib/tests'
rm -rf *.o bin output *.tmp mimeTester.tmp mimeTester.out
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib/tests'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
cd hg && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd lib && make clean
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o;
rm -f ../../lib/i686/jkhgap.a;
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartReset'
rm -f cartReset.o cartReset
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartReset'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/das'
rm -f das.o das
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/das'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgBlat'
rm -f hgBlat.o hgBlat
rm -f hgSs_*.fa hgSs_*.pslx
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgBlat'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: `clean' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgConvert'
rm -f hgConvert.o hgConvert
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgConvert'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGateway'
rm -f hgGateway.o hgGateway
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGateway'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGene'
rm -f hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o flyBaseInfo.o go.o info.o links.o microarray.o method.o localization.o mrnaDescriptions.o otherOrgs.o pathways.o pseudoGene.o rnaStructure.o sequence.o swissProtComments.o synonym.o wikiTrack.o hgGene
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGene'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGenome'
rm -f browseRegions.o clickOnImage.o configure.o correlate.o hgGenome.o mainPage.o sortGenes.o upload.o usage.o custom.o wiggle.o maf.o bedList.o chromGraph.o import.o hgGenome
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGenome'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPcr'
rm -f hgPcr.o hgPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPcr'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSession'
rm -f hgSession.o hgSession
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSession'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTables'
rm -f hgTables.o asObj.o bedList.o bigBed.o bigWig.o chromGraph.o compositeTrack.o custom.o filterFields.o gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o seqOut.o sumStats.o usage.o wiggle.o wikiTrack.o galaxy.o userRegions.o hgTables
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTables'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTracks'
rm -f hgTracks.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o goldTrack.o loweLabTracks.o mafTrack.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o simpleTracks.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o hgTracks
rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTracks'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTrackUi'
rm -f hgTrackUi.o cgapSageUi.o encodePeakUi.o hgTrackUi
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTrackUi'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgc'
rm -f hgc.o bamClick.o bigBedClick.o cgapSageClick.o encodeClick.o expClick.o mafClick.o hgdpClick.o regMotif.o wiggleClick.o retroClick.o lowelab.o rnaFoldClick.o transMapClick.o txCdsInfo.o ccdsClick.o mgcClick.o dbRIP.o wikiTrack.o virusClick.o hgc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgc'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartDump'
rm -f cartDump.o cartDump
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartDump'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNear'
rm -f hgNear.o advFilter.o afiAli.o association.o colTemplate.o configure.o customColumn.o examples.o expRatio.o flyBase.o getSeq.o go.o intronSize.o knownGene.o order.o pfam.o search.o userSettings.o hgNear
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNear'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGateway'
rm -f pbGateway.o pbGateway
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGateway'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbTracks'
rm -f pbTracks.o pbTracks
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbTracks'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGlobal'
rm -f pbGlobal.o pbGlobal
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGlobal'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgLiftOver'
rm -f hgLiftOver.o hgLiftOver
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgLiftOver'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/hgVisiGene'
rm -f hgVisiGene.o captionElement.o configPage.o printCaption.o probePage.o visiSearch.o hgVisiGene
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/hgVisiGene'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/mkEncodeFrameset'
echo "nothing to clean here"
nothing to clean here
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/mkEncodeFrameset'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeDataVersions'
rm -f hgEncodeDataVersions.o hgEncodeDataVersions
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeDataVersions'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeVocab'
rm -f hgEncodeVocab.o hgEncodeVocab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeVocab'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/phyloGif'
rm -f phyloGif.o phyloGif
rm -f test.gif testWeb.gif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/phyloGif'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgCustom'
rm -f hgCustom.o hgCustom
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgCustom'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPal'
rm -f hgPal.o hgPal
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPal'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: `clean' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/js'
make[2]: Nothing to be done for `clean'.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/js'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed'
rm -f hgLoadBed.o hgLoadBed tests/bed.tab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle'
rm -f test_data/chr1_0.wib test_data/chr1_0.wig test_data/chr1_1.wib \
	test_data/chr1_1.wig test_data/chr1_2.wib test_data/chr1_2.wig \
	test_data/chr1_begin.ascii test_data/chr1_end.ascii \
	test_data/chr1_middle.ascii test_data/chrM.ascii test_data/chrM.wib \
	test_data/chrM.wig test_data/wiggle.tab \
	hgLoadWiggle.o hgDumpWiggle.o hgWiggle.o hgWiggle wigEncode.o wigEncode hgLoadWiggle
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf'
rm -f hgLoadMaf.o hgLoadMafSummary.o hgLoadMaf hgLoadMafSummary tests/bed.tab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd jkOwnLib && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
rm -f bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o  ../lib/i686/jkOwnLib.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
cd utils && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
rm -f tags TAGS
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
make -j14 -C src/lib 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aliType.o -c aliType.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o apacheLog.o -c apacheLog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o asParse.o -c asParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axt.o -c axt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtAffine.o -c axtAffine.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o base64.o -c base64.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o basicBed.o -c basicBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bbiRead.o -c bbiRead.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bbiWrite.o -c bbiWrite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigBed.o -c bigBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o binRange.o -c binRange.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bits.o -c bits.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastOut.o -c blastOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastParse.o -c blastParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxClump.o -c boxClump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxLump.o -c boxLump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bPlusTree.o -c bPlusTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bwgCreate.o -c bwgCreate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bwgQuery.o -c bwgQuery.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cda.o -c cda.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chain.o -c chain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainBlock.o -c chainBlock.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainConnect.o -c chainConnect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToAxt.o -c chainToAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToPsl.o -c chainToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cheapcgi.o -c cheapcgi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cirTree.o -c cirTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o codebias.o -c codebias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o colHash.o -c colHash.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o common.o -c common.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o correlate.o -c correlate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crTree.o -c crTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dgRange.o -c dgRange.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o diGraph.o -c diGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dlist.o -c dlist.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaLoad.o -c dnaLoad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMarkov.o -c dnaMarkov.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMotif.o -c dnaMotif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaseq.o -c dnaseq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnautil.o -c dnautil.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dtdParse.o -c dtdParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dystring.o -c dystring.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o emblParse.o -c emblParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errCatch.o -c errCatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errabort.o -c errabort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fa.o -c fa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAli.o -c ffAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffScore.o -c ffScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o filePath.o -c filePath.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fixColor.o -c fixColor.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o flydna.o -c flydna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fof.o -c fof.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fuzzyShow.o -c fuzzyShow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapCalc.o -c gapCalc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gdf.o -c gdf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gemfont.o -c gemfont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genomeRangeTree.o -c genomeRangeTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfNet.o -c gfNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gff.o -c gff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gff3.o -c gff3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfxPoly.o -c gfxPoly.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifLabel.o -c gifLabel.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifcomp.o -c gifcomp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifdecomp.o -c gifdecomp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifread.o -c gifread.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifwrite.o -c gifwrite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hash.o -c hash.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o histogram.o -c histogram.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmPfamParse.o -c hmmPfamParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmstats.o -c hmmstats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmlPage.o -c htmlPage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmshell.o -c htmshell.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o https.o -c https.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o intExp.o -c intExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o intValTree.o -c intValTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o internet.o -c internet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o itsa.o -c itsa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jointalign.o -c jointalign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jpegSize.o -c jpegSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o keys.o -c keys.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kxTok.o -c kxTok.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o linefile.o -c linefile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o localmem.o -c localmem.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o log.o -c log.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o maf.o -c maf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFromAxt.o -c mafFromAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafScore.o -c mafScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o md5.o -c md5.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o memalloc.o -c memalloc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o memgfx.o -c memgfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgCircle.o -c mgCircle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgHugeFont.o -c mgHugeFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgLargeFont.o -c mgLargeFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgMediumFont.o -c mgMediumFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgPolygon.o -c mgPolygon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgSmallFont.o -c mgSmallFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgTinyFont.o -c mgTinyFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mime.o -c mime.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o net.o -c net.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nib.o -c nib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibTwo.o -c nibTwo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nt4.o -c nt4.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o numObscure.o -c numObscure.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o obscure.o -c obscure.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oldGff.o -c oldGff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oligoTm.o -c oligoTm.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o options.o -c options.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o osunix.o -c osunix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pairHmm.o -c pairHmm.c
obscure.c: In function ‘incCounterFile’:
obscure.c:34: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o phyloTree.o -c phyloTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pipeline.o -c pipeline.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o portimpl.o -c portimpl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pngwrite.o -c pngwrite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psGfx.o -c psGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psPoly.o -c psPoly.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pscmGfx.o -c pscmGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psl.o -c psl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslGenoShow.o -c pslGenoShow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslShow.o -c pslShow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslTbl.o -c pslTbl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslTransMap.o -c pslTransMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pthreadWrap.o -c pthreadWrap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qa.o -c qa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o quickHeap.o -c quickHeap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o quotedP.o -c quotedP.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ra.o -c ra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rbTree.o -c rbTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rangeTree.o -c rangeTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o repMask.o -c repMask.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rle.o -c rle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rnautil.o -c rnautil.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rqlEval.o -c rqlEval.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rqlParse.o -c rqlParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rudp.o -c rudp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scoreWindow.o -c scoreWindow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seg.o -c seg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seqOut.o -c seqOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seqStats.o -c seqStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servBrcMcw.o -c servBrcMcw.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servCrunx.o -c servCrunx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servcis.o -c servcis.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servcl.o -c servcl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servmsII.o -c servmsII.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servpws.o -c servpws.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o shaRes.o -c shaRes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o slog.o -c slog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snof.o -c snof.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snofmake.o -c snofmake.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snofsig.o -c snofsig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spaceSaver.o -c spaceSaver.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedColumn.o -c spacedColumn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedSeed.o -c spacedSeed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splatAli.o -c splatAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlList.o -c sqlList.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlNum.o -c sqlNum.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subText.o -c subText.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sufa.o -c sufa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sufx.o -c sufx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o synQueue.o -c synQueue.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tabRow.o -c tabRow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o textOut.o -c textOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tokenizer.o -c tokenizer.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trix.o -c trix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBit.o -c twoBit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o udc.o -c udc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vGfx.o -c vGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vGif.o -c vGif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vPng.o -c vPng.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o verbose.o -c verbose.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wildcmp.o -c wildcmp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wormdna.o -c wormdna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xAli.o -c xAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xa.o -c xa.c
twoBit.c: In function ‘twoBitWriteOne’:
twoBit.c:201: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:203: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:209: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:211: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xap.o -c xap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xenshow.o -c xenshow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xmlEscape.o -c xmlEscape.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xp.o -c xp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o zlibFace.o -c zlibFace.c
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
make -j14 -C src/jkOwnLib 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bandExt.o -c bandExt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crudeali.o -c crudeali.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAliHelp.o -c ffAliHelp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffSeedExtend.o -c ffSeedExtend.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fuzzyFind.o -c fuzzyFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genoFind.o -c genoFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfBlatLib.o -c gfBlatLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfClientLib.o -c gfClientLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfInternal.o -c gfInternal.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfOut.o -c gfOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfPcrLib.o -c gfPcrLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfWebLib.o -c gfWebLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ooc.o -c ooc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o patSpace.o -c patSpace.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splix.o -c splix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o supStitch.o -c supStitch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trans3.o -c trans3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xenbig.o -c xenbig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xensmall.o -c xensmall.c
ar rcus ../lib/i686/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o 
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
make -j14 -C src/utils/stringify 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o stringify.o -c stringify.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify stringify.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify'
make -j14 -C src blatSuite 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
cd lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
cd jkOwnLib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
make[1]: `../lib/i686/jkOwnLib.a' is up to date.
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
cd blat && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blat.o -c blat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat blat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat'
cd gfClient && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfClient'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfClient.o -c gfClient.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient gfClient.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfClient'
cd gfServer && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfServer'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfServer.o -c gfServer.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer gfServer.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfServer'
cd webBlat && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/webBlat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o webBlat.o -c webBlat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o webBlat webBlat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  webBlat
skipping strip webBlat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/webBlat'
cd hg/pslPretty && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslPretty.o -c pslPretty.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPretty pslPretty.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty'
cd hg/pslReps && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslReps.o -c pslReps.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslReps pslReps.o  ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps'
cd hg/pslSort && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSort.o -c pslSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSort pslSort.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort'
cd utils/nibFrag && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibFrag.o -c nibFrag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag nibFrag.o ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag'
cd utils/faToNib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToNib.o -c faToNib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib faToNib.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib'
cd utils/faToTwoBit && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToTwoBit.o -c faToTwoBit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit faToTwoBit.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit'
cd utils/twoBitToFa && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitToFa.o -c twoBitToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa twoBitToFa.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa'
cd utils/twoBitInfo && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitInfo.o -c twoBitInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo twoBitInfo.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo'
cd isPcr && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr'
cd gfPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/gfPcr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfPcr.o -c gfPcr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfPcr gfPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  -lm 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/gfPcr'
cd isPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/isPcr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o isPcr.o -c isPcr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr isPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/isPcr'
cd webPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/webPcr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o webPcr.o -c webPcr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o webPcr webPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  webPcr
skipping strip webPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/webPcr'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr'
cd blatz && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blatz'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o standalone.o -c standalone.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o align.o -c align.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bzp.o -c bzp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapless.o -c gapless.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o index.o -c index.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o output.o -c output.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o client.o -c client.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o server.o -c server.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient client.o bzp.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatz standalone.o align.o bzp.o gapless.o index.o output.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer server.o align.o bzp.o gapless.o index.o output.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer
echo made
made
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blatz'
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
make -j14 -C src/hg utils 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o acemblyClass.o -c acemblyClass.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyAllExonProbe.o -c affyAllExonProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyAtlas.o -c affyAtlas.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affy10KDetails.o -c affy10KDetails.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affy120KDetails.o -c affy120KDetails.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyOffset.o -c affyOffset.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyPairs.o -c affyPairs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agp.o -c agp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agpFrag.o -c agpFrag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agpGap.o -c agpGap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o alignSeqSizes.o -c alignSeqSizes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o altGraph.o -c altGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o altGraphX.o -c altGraphX.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ancientRref.o -c ancientRref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o atomDb.o -c atomDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o axtInfo.o -c axtInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o axtLib.o -c axtLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bactigPos.o -c bactigPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bamFile.o -c bamFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o baseMaskCommon.o -c baseMaskCommon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bdgpExprLink.o -c bdgpExprLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bdgpGeneInfo.o -c bdgpGeneInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed.o -c bed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed5FloatScore.o -c bed5FloatScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed5Pval.o -c bed5Pval.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed6FloatScore.o -c bed6FloatScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed12Source.o -c bed12Source.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed12wSeq.o -c bed12wSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bedCart.o -c bedCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiGeneInfo.o -c bgiGeneInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiGeneSnp.o -c bgiGeneSnp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiSnp.o -c bgiSnp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bioImage.o -c bioImage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blastTab.o -c blastTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blastzNet.o -c blastzNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blatServers.o -c blatServers.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o borf.o -c borf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o borkPseudoHom.o -c borkPseudoHom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o botDelay.o -c botDelay.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cart.o -c cart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cartDb.o -c cartDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsEvidence.o -c cdsEvidence.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsOrtho.o -c cdsOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsPick.o -c cdsPick.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsSpec.o -c cdsSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ccdsInfo.o -c ccdsInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ccdsGeneMap.o -c ccdsGeneMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o celeraCoverage.o -c celeraCoverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o celeraDupPositive.o -c celeraDupPositive.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgapSage/cgapSage.o -c cgapSage/cgapSage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgapSage/cgapSageLib.o -c cgapSage/cgapSageLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgh.o -c cgh.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainCart.o -c chainCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainDb.o -c chainDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainLink.o -c chainLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainNet.o -c chainNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainNetDbLoad.o -c chainNetDbLoad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chicken13kInfo.o -c chicken13kInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromBins.o -c chromBins.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chr18deletions.o -c chr18deletions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromGraph.o -c chromGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromGraphFactory.o -c chromGraphFactory.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromInfo.o -c chromInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromInserts.o -c chromInserts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromKeeper.o -c chromKeeper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o clonePos.o -c clonePos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o codeBlast.o -c codeBlast.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o codeBlastScore.o -c codeBlastScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cogs.o -c cogs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cogsxra.o -c cogsxra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o columnInfo.o -c columnInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o contigAcc.o -c contigAcc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o coordConv.o -c coordConv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpIafrate.o -c cnpIafrate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpIafrate2.o -c cnpIafrate2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpLocke.o -c cnpLocke.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpRedon.o -c cnpRedon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSebat.o -c cnpSebat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSebat2.o -c cnpSebat2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharp2.o -c cnpSharp2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharpCutoff.o -c cnpSharpCutoff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharpSample.o -c cnpSharpSample.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharp.o -c cnpSharp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cpgIsland.o -c cpgIsland.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cpgIslandExt.o -c cpgIslandExt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ctgPos.o -c ctgPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ctgPos2.o -c ctgPos2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customFactory.o -c customFactory.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customPp.o -c customPp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customTrack.o -c customTrack.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cutter.o -c cutter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cytoBand.o -c cytoBand.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbDb.o -c dbDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbRIP.o -c dbRIP.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbSnpRs.o -c dbSnpRs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o defaultDb.o -c defaultDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o delConrad2.o -c delConrad2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o delHinds2.o -c delHinds2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dgv.o -c dgv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dless.o -c dless.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dnaMotifSql.o -c dnaMotifSql.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dnaProbe.o -c dnaProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dv.o -c dv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dvBed.o -c dvBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dvXref2.o -c dvXref2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o easyGene.o -c easyGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ec.o -c ec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecCode.o -c ecCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecAttribute.o -c ecAttribute.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecAttributeCode.o -c ecAttributeCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeErge.o -c encode/encodeErge.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeErgeHssCellLines.o -c encode/encodeErgeHssCellLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeHapMapAlleleFreq.o -c encode/encodeHapMapAlleleFreq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeIndels.o -c encode/encodeIndels.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodePeak.o -c encode/encodePeak.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRegionInfo.o -c encode/encodeRegionInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRegionInfoCustom.o -c encode/encodeRegionInfoCustom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRna.o -c encode/encodeRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeStanfordPromoters.o -c encode/encodeStanfordPromoters.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeStanfordPromotersAverage.o -c encode/encodeStanfordPromotersAverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/pairedTagAlign.o -c encode/pairedTagAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/tagAlign.o -c encode/tagAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensFace.o -c ensFace.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensInfo.o -c ensInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensPhusionBlast.o -c ensPhusionBlast.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensXRefZfish.o -c ensXRefZfish.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o est3.o -c est3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o estOrientInfo.o -c estOrientInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o estPair.o -c estPair.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o exoFish.o -c exoFish.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o expData.o -c expData.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o expRecord.o -c expRecord.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o exprBed.o -c exprBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o fbTables.o -c fbTables.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o featureBits.o -c featureBits.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o findKGAlias.o -c findKGAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o findKGProtAlias.o -c findKGProtAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o fishClones.o -c fishClones.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyBase2004Xref.o -c flyBase2004Xref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyBaseSwissProt.o -c flyBaseSwissProt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyreg.o -c flyreg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyreg2.o -c flyreg2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbExtFile.o -c gbExtFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbWarn.o -c gbWarn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbMiscDiff.o -c gbMiscDiff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbProtAnn.o -c gbProtAnn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gcPercent.o -c gcPercent.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbSeq.o -c gbSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genbank.o -c genbank.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gencodeGeneClass.o -c gencodeGeneClass.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gencodeIntron.o -c gencodeIntron.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genMapDb.o -c genMapDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneBands.o -c geneBands.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheck.o -c geneCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheckDetails.o -c geneCheckDetails.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheckWidget.o -c geneCheckWidget.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneGraph.o -c geneGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genePred.o -c genePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genePredReader.o -c genePredReader.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneSimilarities.o -c geneSimilarities.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genoLay.o -c genoLay.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomeRangeTreeFile.o -c genomeRangeTreeFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomicDups.o -c genomicDups.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomicSuperDups.o -c genomicSuperDups.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggCluster.o -c ggCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggDbIo.o -c ggDbIo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggDump.o -c ggDump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggGraph.o -c ggGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggMrnaAli.o -c ggMrnaAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggTypes.o -c ggTypes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o glDbRep.o -c glDbRep.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o goa.o -c goa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o goaPart.o -c goaPart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o googleAnalytics.o -c googleAnalytics.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o growthCondition.o -c growthCondition.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o grp.o -c grp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapAllelesOrtho.o -c hapmapAllelesOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapAllelesSummary.o -c hapmapAllelesSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapPhaseIIISummary.o -c hapmapPhaseIIISummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapSnps.o -c hapmapSnps.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapSnpsCombined.o -c hapmapSnpsCombined.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hCommon.o -c hCommon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hCytoBand.o -c hCytoBand.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hdb.o -c hdb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgColors.o -c hgColors.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgConfig.o -c hgConfig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgExp.o -c hgExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFind.o -c hgFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFindSpec.o -c hgFindSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFindSpecCustom.o -c hgFindSpecCustom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgGene.o -c hgGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgMaf.o -c hgMaf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgRelate.o -c hgRelate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgSeq.o -c hgSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgdpGeo.o -c hgdpGeo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hPrint.o -c hPrint.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hVarSubst.o -c hVarSubst.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hvGfx.o -c hvGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o HInv.o -c HInv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hui.o -c hui.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o humanParalog.o -c humanParalog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o imageClone.o -c imageClone.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o isochores.o -c isochores.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ispyTables.o -c ispyTables.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o itemAttr.o -c itemAttr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o itemConf.o -c itemConf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jalview.o -c jalview.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxOrtholog.o -c jaxOrtholog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxQTL.o -c jaxQTL.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxQTL3.o -c jaxQTL3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jksql.o -c jksql.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o joiner.o -c joiner.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jsHelper.o -c jsHelper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kg1ToKg2.o -c kg1ToKg2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jgiGene.o -c jgiGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgAlias.o -c kgAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgColor.o -c kgColor.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgProtAlias.o -c kgProtAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgXref.o -c kgXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownInfo.o -c knownInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownMore.o -c knownMore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownToSuper.o -c knownToSuper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ld.o -c ld.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ld2.o -c ld2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lfs.o -c lfs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftOver.o -c liftOver.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftOverChain.o -c liftOverChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftUp.o -c liftUp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o llaInfo.o -c llaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lsSnpPdb.o -c lsSnpPdb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lsSnpPdbChimera.o -c lsSnpPdbChimera.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafFrames.o -c mafFrames.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafGene.o -c mafGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafSummary.o -c mafSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mammalPsg.o -c mammalPsg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mapSts.o -c mapSts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mcnBreakpoints.o -c mcnBreakpoints.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o metaChromGraph.o -c metaChromGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o microarray.o -c microarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o minChromSize.o -c minChromSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o minGeneInfo.o -c minGeneInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mrnaMisMatch.o -c mrnaMisMatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseOrtho.o -c mouseOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseSyn.o -c mouseSyn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseSynWhd.o -c mouseSynWhd.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mysqlTableStatus.o -c mysqlTableStatus.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o netAlign.o -c netAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o netCart.o -c netCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o nonCodingUi.o -c nonCodingUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o omimTitle.o -c omimTitle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ooUtils.o -c ooUtils.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o orthoAlleles.o -c orthoAlleles.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pal.o -c pal.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pbStamp.o -c pbStamp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pcrResult.o -c pcrResult.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pepPred.o -c pepPred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o plasEndPairs.o -c plasEndPairs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o polyGenotype.o -c polyGenotype.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o protFeat.o -c protFeat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pscreen.o -c pscreen.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pseudoGeneLink.o -c pseudoGeneLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pslReader.o -c pslReader.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pslWScore.o -c pslWScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o putaInfo.o -c putaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o qaSeq.o -c qaSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rangeTreeFile.o -c rangeTreeFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rankProp.o -c rankProp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRate.o -c recombRate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRateRat.o -c recombRateRat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRateMouse.o -c recombRateMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o refLink.o -c refLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o refSeqStatus.o -c refSeqStatus.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rgdQtl.o -c rgdQtl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o riken.o -c riken.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rhMapZfishInfo.o -c rhMapZfishInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rikenBest.o -c rikenBest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rikenCluster.o -c rikenCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rmskOut.o -c rmskOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaFold.o -c rnaFold.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaGene.o -c rnaGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaGroup.o -c rnaGroup.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaHybridization.o -c rnaHybridization.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaPLFold.o -c rnaPLFold.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tRNAs.o -c tRNAs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbRNAs.o -c gbRNAs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snoRNAs.o -c snoRNAs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabPfamHit.o -c lowelabPfamHit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabArkinOperonScore.o -c lowelabArkinOperonScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabTIGROperonScore.o -c lowelabTIGROperonScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaSecStr.o -c rnaSecStr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsFactors.o -c tfbsConsFactors.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o retroMrnaInfo.o -c retroMrnaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o roughAli.o -c roughAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapStuff.o -c transMapStuff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapInfo.o -c transMapInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapGene.o -c transMapGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapSrc.o -c transMapSrc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sage.o -c sage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sageCounts.o -c sageCounts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sageExp.o -c sageExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sample.o -c sample.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sqlProg.o -c sqlProg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsCons.o -c tfbsCons.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsSites.o -c tfbsConsSites.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sanger22extra.o -c sanger22extra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sangerGene.o -c sangerGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sangerGeneToWBGeneID.o -c sangerGeneToWBGeneID.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sargassoSeaXra.o -c sargassoSeaXra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o scopDes.o -c scopDes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o scoredRef.o -c scoredRef.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdAbundance.o -c sgdAbundance.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdClone.o -c sgdClone.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdDescription.o -c sgdDescription.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdOther.o -c sgdOther.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o simpleNucDiff.o -c simpleNucDiff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o simpleRepeat.o -c simpleRepeat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp.o -c snp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125.o -c snp125.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125CodingCoordless.o -c snp125CodingCoordless.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpExceptions.o -c snpExceptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpFasta.o -c snpFasta.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpMap.o -c snpMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpTmp.o -c snpTmp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpUi.o -c snpUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125Exceptions.o -c snp125Exceptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125Ui.o -c snp125Ui.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o softPromoter.o -c softPromoter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o softberryHom.o -c softberryHom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spDb.o -c spDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o splignAlign.o -c splignAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stanMad.o -c stanMad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsAlias.o -c stsAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfo.o -c stsInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfo2.o -c stsInfo2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoMouse.o -c stsInfoMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoMouseNew.o -c stsInfoMouseNew.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoRat.o -c stsInfoRat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMap.o -c stsMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapMouse.o -c stsMapMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapMouseNew.o -c stsMapMouseNew.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapRat.o -c stsMapRat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMarker.o -c stsMarker.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o switchDbTss.o -c switchDbTss.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o synMap.o -c synMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o synteny100000.o -c synteny100000.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o syntenyBerk.o -c syntenyBerk.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o syntenySanger.o -c syntenySanger.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tableDescriptions.o -c tableDescriptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tableStatus.o -c tableStatus.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o targetDb.o -c targetDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsMap.o -c tfbsConsMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonDivision.o -c taxonDivision.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonGeneticCode.o -c taxonGeneticCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonName.o -c taxonName.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonNode.o -c taxonNode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonXref.o -c taxonXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tigrCmrGene.o -c tigrCmrGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tigrOperon.o -c tigrOperon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tilingPath.o -c tilingPath.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o traceInfo.o -c traceInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackDb.o -c trackDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackDbCustom.o -c trackDbCustom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackLayout.o -c trackLayout.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackTable.o -c trackTable.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackVersion.o -c trackVersion.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trashDir.o -c trashDir.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCode.o -c transRegCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCodeCondition.o -c transRegCodeCondition.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCodeProbe.o -c transRegCodeProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txCluster.o -c txCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txCommon.o -c txCommon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txEdgeBed.o -c txEdgeBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txEdgeOrtho.o -c txEdgeOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txGraph.o -c txGraph.c
trashDir.c: In function ‘copyFileToTrash’:
trashDir.c:58: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txInfo.o -c txInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txRnaAccs.o -c txRnaAccs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o validateGisaid.o -c validateGisaid.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vegaInfo.o -c vegaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vegaInfoZfish.o -c vegaInfoZfish.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o visiGene.o -c visiGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vntr.o -c vntr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wabAli.o -c wabAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o web.o -c web.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ncRna.o -c ncRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wgRna.o -c wgRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wigAsciiToBinary.o -c wigAsciiToBinary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wigDataStream.o -c wigDataStream.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggle.o -c wiggle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggleCart.o -c wiggleCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggleUtils.o -c wiggleUtils.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wikiLink.o -c wikiLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wikiTrack.o -c wikiTrack.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o zdobnovSynt.o -c zdobnovSynt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o oreganno.o -c oreganno.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o oregannoUi.o -c oregannoUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gvUi.o -c gvUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gv.o -c gv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o omicia.o -c omicia.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o protVar.o -c protVar.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pgSnp.o -c pgSnp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o alignInfo.o -c alignInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cddInfo.o -c cddInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o loweutils.o -c loweutils.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cddDesc.o -c cddDesc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o arCOGs.o -c arCOGs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o arcogdesc.o -c arcogdesc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o megablastInfo.o -c megablastInfo.c
ar rcus ../../lib/i686/jkhgap.a acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
cd protein/lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pbUtil.o -c pbUtil.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doStamps.o -c doStamps.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doTracks.o -c doTracks.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o domains.o -c domains.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spKgMap.o -c spKgMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doSam.o -c doSam.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o uniref.o -c uniref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o unirefTbl.o -c unirefTbl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spMapper.o -c spMapper.c
ar rcus ../../../lib/i686/jkpbap.a pbUtil.o doStamps.o doTracks.o domains.o spKgMap.o doSam.o uniref.o unirefTbl.o spMapper.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
( cd affyTransciptome && echo affyTransciptome && make )
( cd agpCloneCheck && echo agpCloneCheck && make )
( cd agpCloneList && echo agpCloneList && make )
( cd agpAllToFaFile && echo agpAllToFaFile && make )
( cd agpToFa && echo agpToFa && make )
( cd agpToGl && echo agpToGl && make )
( cd altSplice && echo altSplice && make )
affyTransciptome
( cd autoDtd && echo autoDtd && make )
( cd autoSql && echo autoSql && make )
( cd autoXml && echo autoXml && make )
agpCloneCheck
agpAllToFaFile
agpCloneList
agpToFa
( cd bedOrBlocks && echo bedOrBlocks && make )
( cd bedIntersect && echo bedIntersect && make )
altSplice
agpToGl
( cd bedItemOverlapCount && echo bedItemOverlapCount && make )
autoDtd
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/affyPairsToSample affyPairsToSample.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
autoXml
bedOrBlocks
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpCloneCheck.o -c agpCloneCheck.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList'
( cd bedSort && echo bedSort && make )
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpCloneList.o -c agpCloneList.c
autoSql
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpToFa.o -c agpToFa.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpToGl.o -c agpToGl.c
bedItemOverlapCount
bedSort
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o autoXml.o -c autoXml.c
bedIntersect
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o autoSql.o -c autoSql.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice'
cd lib; make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpAllToFaFile.o -c agpAllToFaFile.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o autoDtd.o -c autoDtd.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedItemOverlapCount.o -c bedItemOverlapCount.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedSort.o -c bedSort.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedIntersect.o -c bedIntersect.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedOrBlocks.o -c bedOrBlocks.c
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spliceGraph.o -c spliceGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpAllToFaFile agpAllToFaFile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedIntersect bedIntersect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneCheck agpCloneCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl agpToGl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneList agpCloneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa \
		agpToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSort bedSort.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/normalizeSampleFile normalizeSampleFile.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount bedItemOverlapCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect'
( cd bedToGenePred && echo bedToGenePred && make )
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o exonGraph.o -c exonGraph.c
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl'
bedToGenePred
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o heap.o -c heap.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedToGenePred.o -c bedToGenePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks bedOrBlocks.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/avgTranscriptomeExps avgTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck'
( cd bedSplitOnChrom && echo bedSplitOnChrom && make )
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd autoDtd.o ../../lib/i686/jkweb.a  -lm
bedSplitOnChrom
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort'
( cd blastToPsl && echo blastToPsl && make )
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedSplitOnChrom.o -c bedSplitOnChrom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToGenePred bedToGenePred.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
blastToPsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastToPsl.o -c blastToPsl.c
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslUniq.o -c pslUniq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maxTranscriptomeExps maxTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o altSpliceSite.o -c altSpliceSite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoXml autoXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd'
( cd borfBig && echo borfBig && make )
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom bedSplitOnChrom.o ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o autoSql autoSql.o ../../lib/i686/jkweb.a  -lm 
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaleSampleFiles scaleSampleFiles.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
borfBig
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pfamDat.o -c pfamDat.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o borfBig.o -c borfBig.c
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averageZoomLevels averageZoomLevels.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o affyProbe.o -c affyProbe.c
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o altProbe.o -c altProbe.c
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dMatrix.o -c dMatrix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig borfBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/groupSamples groupSamples.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom'
( cd checkHgFindSpec && echo checkHgFindSpec && make )
i686-pc-linux-gnu-gcc -O2 -pipe pslUniq.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm 
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splice.o -c splice.c
rm -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoSql
checkHgFindSpec
cp -p autoSql /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoSql
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkHgFindSpec.o -c checkHgFindSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mouseAPSetEventMap.o -c mouseAPSetEventMap.c
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql'
( cd checkTableCoords && echo checkTableCoords && make )
checkTableCoords
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkTableCoords.o -c checkTableCoords.c
echo 'skipping strip'  checkTableCoords
skipping strip checkTableCoords
mv checkTableCoords /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkTableCoords
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig
mv: cannot stat `checkTableCoords': No such file or directory
make[1]: *** [install] Error 1
make[1]: *** Waiting for unfinished jobs....
( cd ctgFaToFa && echo ctgFaToFa && make )
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig'
mv checkHgFindSpec /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkHgFindSpec
ctgFaToFa
mv: cannot stat `checkHgFindSpec': No such file or directory
make[1]: *** [install] Error 1
make[1]: *** Waiting for unfinished jobs....
( cd ctgToChromFa && echo ctgToChromFa && make )
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ctgFaToFa.o -c ctgFaToFa.c
ctgToChromFa
mv a.out pslUniq
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ctgToChromFa.o -c ctgToChromFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -o blastToPsl blastToPsl.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm 
cp -f pslUniq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq
( cd dbTrash && echo dbTrash && make )
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq
( cd estOrient && echo estOrient && make )
( cd embossToPsl && echo embossToPsl && make )
estOrient
dbTrash
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dbTrash.o -c dbTrash.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o estOrient.o -c estOrient.c
embossToPsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o embossToPsl.o -c embossToPsl.c
( cd encode/validateFiles && echo encode/validateFiles && make )
( cd fakeFinContigs && echo fakeFinContigs && make )
encode/validateFiles
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o validateFiles.o -c validateFiles.c
( cd fakeOut && echo fakeOut && make )
fakeFinContigs
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgFaToFa ctgFaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec'
make: *** [checkHgFindSpec.utils] Error 2
make: *** Waiting for unfinished jobs....
fakeOut
cp -f blastToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fakeOut.o -c fakeOut.c
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fakeFinContigs.o -c fakeFinContigs.c
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa ctgToChromFa.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords'
ar rcu ./i686/libSpliceGraph.a spliceGraph.o exonGraph.o heap.o altSpliceSite.o pfamDat.o affyProbe.o altProbe.o dMatrix.o splice.o mouseAPSetEventMap.o
make: *** [checkTableCoords.utils] Error 2
ranlib ./i686/libSpliceGraph.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -o embossToPsl embossToPsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib'
cd altSplice; make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sequenceForBed sequenceForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altAnalysis altAnalysis.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash dbTrash.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSplice altSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoSplice orthoSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToBed agxToBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
cp -f embossToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSummary altSummary.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedInGraph bedInGraph.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o estOrient estOrient.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeOut fakeOut.o  ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/embossToPsl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/consForBed consForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/embossToPsl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeFinContigs fakeFinContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altPaths altPaths.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToExons bedToExons.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToPsl genePredToPsl.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles validateFiles.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash
cp -f estOrient /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estOrient
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient'
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice'
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
 * ERROR: sci-biology/ucsc-genome-browser-223 failed:
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  54:  Called src_compile
 *   environment, line 2972:  Called die
 * The specific snippet of code:
 *           emake -C src/hg utils || die;
 * 
 * If you need support, post the output of 'emerge --info =sci-biology/ucsc-genome-browser-223',
 * the complete build log and the output of 'emerge -pqv =sci-biology/ucsc-genome-browser-223'.
Merge of sci-biology/ucsc-genome-browser-223 at 2010-02-16T18:45:51+00:00
failed
 * The complete build log is located at '/var/log/portage/build/sci-biology/ucsc-genome-browser-223:20100216-184551.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/ucsc-genome-browser-223/temp/environment'.
 * S: '/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent'