Build log

mosflm-7.0.6:20100213-222804.log (text/plain), 22.55 KB, created by Diego Elio Pettenò (RETIRED) on 2010-02-13 23:35:11 UTC

 * CPV:  sci-chemistry/mosflm-7.0.6
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
 * You need one of these Fortran Compilers: g77 gfortran ifc
 * Installed are:  gfortran ifort
>>> Unpacking source...
>>> Unpacking mosflm706.tgz to /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work
 * Applying patches for selected FORTRAN compiler: gfortran
>>> Source unpacked in /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706 ...
rm: cannot remove `src/dps/peak_search/dps_peaksearch': No such file or directory
 * Applying 7.0.6-Makefile.patch ...
  [ ok ]
 * Applying 7.0.6-parallel.patch ...
  [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706 ...
make -j14 MOSHOME=/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706 DPS=/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706 FC=gfortran FLINK=gfortran CC=i686-pc-linux-gnu-gcc AR_FLAGS=vru 'MOSLIBS=-lccp4f -lccp4c -lxdl_view -lcurses -lXt -lmmdb -lccif -lstdc++' 'MCFLAGS=-O0 -fno-second-underscore' 'MOSFLAGS= -fno-second-underscore' 'FFLAGS= -O2' 'CFLAGS=-O2 -pipe' 'MOSCFLAGS=-O2 -pipe' LFLAGS=-Wl,-O1 
touch index/junk.a src/junk.a lib/junk.a util/junk.a cbf/junk.a
rm -f `find ./cbf -name "*.a" -print`
touch lib/DPSLIB.a
rm -f lib/DPSLIB.a
rm -f `find ./index -name "*.a" -print`
cd cbf ; make all ; if [ -f /usr/bin/ranlib ]; \
	then /usr/bin/ranlib lib/libcbf.a; fi
rm -f `find ./src -name "*.a" -print`
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/cbf'
make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf.c
rm -f `find ./lib -name "*.a" -print`
rm -f `find ./util -name "*.a" -print`
cd index ; make
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index'
make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
i686-pc-linux-gnu-gcc  -O2 -pipe -c -o bravais.o bravais.c
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/bravais ; \
	i686-pc-linux-gnu-gcc  -O2 -pipe -c -o bravais_goof.o bravais_goof.c ; \
	mv bravais_goof.o /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index/. ; \
	cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/bravais ; \
	i686-pc-linux-gnu-gcc  -O2 -pipe -c -o bravais_permutate.o \
	bravais_permutate.c ; \
	mv bravais_permutate.o /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index/. ; \
	cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/bravais ; \
	i686-pc-linux-gnu-gcc  -O2 -pipe -c -o bravais_transform.o \
	bravais_transform.c ; \
	mv bravais_transform.o /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index/. ; \
	cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index
i686-pc-linux-gnu-gcc  -O2 -pipe -c write_ub_matrix.c
i686-pc-linux-gnu-gcc  -O2 -pipe -c new_matrix.c
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util; \
	make -f Makefile; \
	cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util'
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o util.o util.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o vector_math.o vector_math.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o cryst_matrix.o cryst_matrix.c
gfortran -O2 -c -o invert.o invert.f
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_transform.o ind_transform.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o nrutil.o nrutil.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o mat_inversion.o mat_inversion.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_alloc.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_stat.o ind_stat.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_ascii.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o fftn.o fftn.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_binary.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_byte_offset.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_canonical.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_codes.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o read_om.o read_om.c
read_om.c: In function ‘read_om’:
read_om.c:56: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
read_om.c:58: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
read_om.c:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o allocate.o allocate.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ref_cell_on_xyz.o ref_cell_on_xyz.c
ar ruv ../../../lib/libdps.a util.o vector_math.o cryst_matrix.o invert.o ind_transform.o nrutil.o mat_inversion.o ind_stat.o fftn.o read_om.o allocate.o ref_cell_on_xyz.o 
ar: creating ../../../lib/libdps.a
a - util.o
a - vector_math.o
a - cryst_matrix.o
a - invert.o
a - ind_transform.o
a - nrutil.o
a - mat_inversion.o
a - ind_stat.o
a - fftn.o
a - read_om.o
a - allocate.o
a - ref_cell_on_xyz.o
chmod 644 ../../../lib/libdps.a
cd fftpack; make -f Makefile
make[3]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util/fftpack'
gfortran -O2  -c -o cfftb.o cfftb.f
gfortran -O2  -c -o cfftb1.o cfftb1.f
gfortran -O2  -c -o cfftf.o cfftf.f
gfortran -O2  -c -o cfftf1.o cfftf1.f
gfortran -O2  -c -o cffti.o cffti.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_compress.c
gfortran -O2  -c -o cffti1.o cffti1.f
gfortran -O2  -c -o cosqb.o cosqb.f
gfortran -O2  -c -o cosqb1.o cosqb1.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_context.c
gfortran -O2  -c -o cosqf.o cosqf.f
gfortran -O2  -c -o cosqf1.o cosqf1.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_file.c
gfortran -O2  -c -o cosqi.o cosqi.f
gfortran -O2  -c -o cost.o cost.f
gfortran -O2  -c -o costi.o costi.f
gfortran -O2  -c -o ezfft1.o ezfft1.f
gfortran -O2  -c -o ezfftb.o ezfftb.f
gfortran -O2  -c -o ezfftf.o ezfftf.f
gfortran -O2  -c -o ezffti.o ezffti.f
gfortran -O2  -c -o passb.o passb.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_lex.c
gfortran -O2  -c -o passb2.o passb2.f
gfortran -O2  -c -o passb3.o passb3.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_packed.c
gfortran -O2  -c -o passb4.o passb4.f
gfortran -O2  -c -o passb5.o passb5.f
gfortran -O2  -c -o passf.o passf.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_predictor.c
gfortran -O2  -c -o passf2.o passf2.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_read_binary.c
gfortran -O2  -c -o passf3.o passf3.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_read_mime.c
gfortran -O2  -c -o passf4.o passf4.f
gfortran -O2  -c -o passf5.o passf5.f
gfortran -O2  -c -o pimach.o pimach.f
gfortran -O2  -c -o radb2.o radb2.f
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_simple.c
gfortran -O2  -c -o radb3.o radb3.f
gfortran -O2  -c -o radb4.o radb4.f
gfortran -O2  -c -o radb5.o radb5.f
gfortran -O2  -c -o radbg.o radbg.f
gfortran -O2  -c -o radf2.o radf2.f
gfortran -O2  -c -o radf3.o radf3.f
gfortran -O2  -c -o radf4.o radf4.f
gfortran -O2  -c -o radf5.o radf5.f
gfortran -O2  -c -o radfg.o radfg.f
gfortran -O2  -c -o rfftb.o rfftb.f
gfortran -O2  -c -o rfftb1.o rfftb1.f
gfortran -O2  -c -o rfftf.o rfftf.f
gfortran -O2  -c -o rfftf1.o rfftf1.f
gfortran -O2  -c -o rffti.o rffti.f
gfortran -O2  -c -o rffti1.o rffti1.f
gfortran -O2  -c -o sinqb.o sinqb.f
gfortran -O2  -c -o sinqf.o sinqf.f
gfortran -O2  -c -o sinqi.o sinqi.f
gfortran -O2  -c -o sint.o sint.f
gfortran -O2  -c -o sint1.o sint1.f
gfortran -O2  -c -o sinti.o sinti.f
gfortran -O2  -c -o tfftpk.o tfftpk.f
ar ruv ../../../../lib/libfftpack.a  cfftb.o cfftb1.o cfftf.o cfftf1.o cffti.o cffti1.o cosqb.o cosqb1.o cosqf.o cosqf1.o cosqi.o cost.o costi.o ezfft1.o ezfftb.o ezfftf.o ezffti.o passb.o passb2.o passb3.o passb4.o passb5.o passf.o passf2.o passf3.o passf4.o passf5.o pimach.o radb2.o radb3.o radb4.o radb5.o radbg.o radf2.o radf3.o radf4.o radf5.o radfg.o rfftb.o rfftb1.o rfftf.o rfftf1.o rffti.o rffti1.o sinqb.o sinqf.o sinqi.o sint.o sint1.o sinti.o tfftpk.o
ar: creating ../../../../lib/libfftpack.a
a - cfftb.o
a - cfftb1.o
a - cfftf.o
a - cfftf1.o
a - cffti.o
a - cffti1.o
a - cosqb.o
a - cosqb1.o
a - cosqf.o
a - cosqf1.o
a - cosqi.o
a - cost.o
a - costi.o
a - ezfft1.o
a - ezfftb.o
a - ezfftf.o
a - ezffti.o
a - passb.o
a - passb2.o
a - passb3.o
a - passb4.o
a - passb5.o
a - passf.o
a - passf2.o
a - passf3.o
a - passf4.o
a - passf5.o
a - pimach.o
a - radb2.o
a - radb3.o
a - radb4.o
a - radb5.o
a - radbg.o
a - radf2.o
a - radf3.o
a - radf4.o
a - radf5.o
a - radfg.o
a - rfftb.o
a - rfftb1.o
a - rfftf.o
a - rfftf1.o
a - rffti.o
a - rffti1.o
a - sinqb.o
a - sinqf.o
a - sinqi.o
a - sint.o
a - sint1.o
a - sinti.o
a - tfftpk.o
chmod 644 ../../../../lib/libfftpack.a
make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util/fftpack'
cd filec; make -f Makefile
make[3]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util/filec'
make wrfile.o wrmad.o wrfits.o wrswap.o wrhead.o wrcal.o rdcal.o rdfile.o rdfits.o rdbinary.o rdmad.o rdhead.o rdctbl.o wrctbl.o dskhd.o dskio.o swpbyt.o getbo.o filec_debug.o jzext.o namfil.o
make[4]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util/filec'
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrfile.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrmad.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_string.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrfits.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrswap.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_stx.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrhead.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrcal.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdcal.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdfile.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdfits.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdbinary.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_tree.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdmad.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdhead.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. rdctbl.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_uncompressed.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. wrctbl.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. dskhd.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_write.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. dskio.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. swpbyt.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. getbo.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/cbf_write_binary.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. filec_debug.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. jzext.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I. namfil.c
make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util/filec'
ar rv ../../../../lib/libfilec.a  wrfile.o wrmad.o wrfits.o wrswap.o wrhead.o wrcal.o rdcal.o rdfile.o rdfits.o rdbinary.o rdmad.o rdhead.o rdctbl.o wrctbl.o dskhd.o dskio.o swpbyt.o getbo.o filec_debug.o jzext.o namfil.o
ar: creating ../../../../lib/libfilec.a
a - wrfile.o
a - wrmad.o
a - wrfits.o
a - wrswap.o
a - wrhead.o
a - wrcal.o
a - rdcal.o
a - rdfile.o
a - rdfits.o
a - rdbinary.o
a - rdmad.o
a - rdhead.o
a - rdctbl.o
a - wrctbl.o
a - dskhd.o
a - dskio.o
a - swpbyt.o
a - getbo.o
a - filec_debug.o
a - jzext.o
a - namfil.o
if [ -f /usr/bin/ranlib ]; then /usr/bin/ranlib ../../../../lib/libfilec.a; fi
rm -f wrfile.o wrmad.o wrfits.o wrswap.o wrhead.o wrcal.o rdcal.o rdfile.o rdfits.o rdbinary.o rdmad.o rdhead.o rdctbl.o wrctbl.o dskhd.o dskio.o swpbyt.o getbo.o filec_debug.o jzext.o namfil.o
make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util/filec'
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/util'
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/index ; \
	make -f Makefile ; \
	cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/index'
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o index.o index.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c examples/img.c
gfortran -O2  -c -o error_exit.o error_exit.f
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_gen_direct.o ind_gen_direct.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_sort_merge.o ind_sort_merge.c
i686-pc-linux-gnu-gcc -O2 -pipe -I./include -I./src  -c src/md5c.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_choose.o ind_choose.c
/usr/bin/ar cr lib/libcbf.a *.o
rm *.o
if [ -f /usr/bin/ranlib ]; then /usr/bin/ranlib lib/libcbf.a ; fi
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/cbf'
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_help.o ind_help.c
i686-pc-linux-gnu-gcc -O2 -pipe   -c -o ind_fortran.o ind_fortran.c
ar ruv ../../../lib/libdps_index.a index.o error_exit.o ind_gen_direct.o ind_sort_merge.o ind_choose.o ind_help.o ind_fortran.o
ar: creating ../../../lib/libdps_index.a
a - index.o
a - error_exit.o
a - ind_gen_direct.o
a - ind_sort_merge.o
a - ind_choose.o
a - ind_help.o
a - ind_fortran.o
chmod 644 ../../../lib/libdps_index.a
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/src/dps/index'
ar ru /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib/libdps_bravais.a bravais.o  bravais_goof.o bravais_permutate.o bravais_transform.o
ar: creating /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib/libdps_bravais.a
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib ; rm -f ________64ELEL_ 
ar ru /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib/dps_index.a bravais.o  bravais_goof.o bravais_permutate.o bravais_transform.o write_ub_matrix.o new_matrix.o
ar: creating /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib/dps_index.a
cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib ; rm -f ________64ELEL_ ; \
	ar x dps_index.a ; rm -f ________64ELEL_ ; \
	ar x libdps.a ; rm -f ________64ELEL_ ; \
	ar x libfftpack.a ; rm -f ________64ELEL_ ; \
	ar x libdps_index.a ; rm -f ________64ELEL_ ; \
	ar vru DPSLIB.a `ls *.o` ; rm -f ________64ELEL_ ; \
	rm -f *.o ; \
	rm -f dps_index.a ; \
	cd /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706
ar: creating DPSLIB.a
a - allocate.o
a - bravais_goof.o
a - bravais.o
a - bravais_permutate.o
a - bravais_transform.o
a - cfftb1.o
a - cfftb.o
a - cfftf1.o
a - cfftf.o
a - cffti1.o
a - cffti.o
a - cosqb1.o
a - cosqb.o
a - cosqf1.o
a - cosqf.o
a - cosqi.o
a - costi.o
a - cost.o
a - cryst_matrix.o
a - error_exit.o
a - ezfft1.o
a - ezfftb.o
a - ezfftf.o
a - ezffti.o
a - fftn.o
a - ind_choose.o
a - index.o
a - ind_fortran.o
a - ind_gen_direct.o
a - ind_help.o
a - ind_sort_merge.o
a - ind_stat.o
a - ind_transform.o
a - invert.o
a - mat_inversion.o
a - new_matrix.o
a - nrutil.o
a - passb2.o
a - passb3.o
a - passb4.o
a - passb5.o
a - passb.o
a - passf2.o
a - passf3.o
a - passf4.o
a - passf5.o
a - passf.o
a - pimach.o
a - radb2.o
a - radb3.o
a - radb4.o
a - radb5.o
a - radbg.o
a - radf2.o
a - radf3.o
a - radf4.o
a - radf5.o
a - radfg.o
a - read_om.o
a - ref_cell_on_xyz.o
a - rfftb1.o
a - rfftb.o
a - rfftf1.o
a - rfftf.o
a - rffti1.o
a - rffti.o
a - sinqb.o
a - sinqf.o
a - sinqi.o
a - sint1.o
a - sinti.o
a - sint.o
a - tfftpk.o
a - util.o
a - vector_math.o
a - write_ub_matrix.o
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/index'
if [ -f /usr/bin/ranlib ]; then /usr/bin/ranlib lib/DPSLIB.a ; fi
rm -f lib/libdps_bravais.a lib/libdps_index.a lib/libfilec.a \
	lib/libfftpack.a lib/libdps.a
make -C mosflm
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/mosflm'
gfortran -c -O0 -fno-second-underscore control.f
gfortran -c -fno-second-underscore mosflm_all_ip_inc.f
gfortran -c -O0 -fno-second-underscore unoptimizable.f
i686-pc-linux-gnu-gcc -O2 -pipe -c pck.c
i686-pc-linux-gnu-gcc -O2 -pipe -c ctimer.c
i686-pc-linux-gnu-gcc -O2 -pipe -c chelp.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o open_socket.o open_socket.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o close_socket.o close_socket.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o read_socket.o read_socket.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o write_socket.o write_socket.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -I../jpg mosflm_jpeg.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o matzerr.o matzerr.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o hklmanage.o hklmanage.c
gfortran -c -O0 -fno-second-underscore torefix.f
i686-pc-linux-gnu-gcc -O2 -pipe -c -o bravais_fortran.o bravais_fortran.c
write_socket.c: In function ‘write_socket_length_’:
write_socket.c:24: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
write_socket.c:25: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
write_socket.c: In function ‘write_socket_section_’:
write_socket.c:40: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
close_socket.c: In function ‘close_socket_’:
close_socket.c:21: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -c cbfwrap.c
i686-pc-linux-gnu-gcc -O2 -pipe -c pilatus_c.c
i686-pc-linux-gnu-gcc -O2 -pipe -c -o fileaccess.o fileaccess.c
read_socket.c: In function ‘read_socket_’:
read_socket.c:70: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
chelp.c: In function ‘read_input_file’:
chelp.c:95: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
chelp.c:108: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
chelp.c:121: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
chelp.c: In function ‘manipulate_tree’:
chelp.c:323: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result
mosflm_jpeg.c: In function ‘mosflm_empty_output_buffer’:
mosflm_jpeg.c:218: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c: In function ‘mosflm_empty_output_bin’:
mosflm_jpeg.c:235: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c: In function ‘mosflm_term_destination’:
mosflm_jpeg.c:260: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c: In function ‘mosflm_term_destination_bin’:
mosflm_jpeg.c:274: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c: In function ‘mosflm_write_ppm’:
mosflm_jpeg.c:335: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:345: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:355: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:366: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:367: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:374: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:375: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c:384: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
mosflm_jpeg.c: In function ‘mosflm_write_jpeg’:
mosflm_jpeg.c:462: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
unoptimizable.f:21984.18:

      COMMON /PRO/IDUM(MAXBUFF)                                         
                  1
Warning: Named COMMON block 'pro' at (1) shall be of the same size
gfortran -Wl,-O1 control.o mosflm_all_ip_inc.o unoptimizable.o pck.o ctimer.o chelp.o open_socket.o close_socket.o read_socket.o write_socket.o mosflm_jpeg.o matzerr.o hklmanage.o torefix.o bravais_fortran.o cbfwrap.o pilatus_c.o fileaccess.o /var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/lib/DPSLIB.a ../cbf/lib/libcbf.a /usr/lib/libjpeg.a  \
                -lccp4f -lccp4c -lxdl_view -lcurses -lXt -lmmdb -lccif -lstdc++ -o ../bin/ipmosflm
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706/mosflm'
>>> Source compiled.
>>> Test phase [test]: sci-chemistry/mosflm-7.0.6
make -j14 -j1 test 
f77  -Wl,-O1  test.f   -o test
make: execvp: f77: Permission denied
make: *** [test] Error 127
 * ERROR: sci-chemistry/mosflm-7.0.6 failed:
 *   Make test failed. See above for details.
 * 
 * Call stack:
 *     ebuild.sh, line   54:  Called src_test
 *   environment, line 3458:  Called _eapi0_src_test
 *     ebuild.sh, line  625:  Called die
 * The specific snippet of code:
 *   			hasq test $FEATURES && die "Make test failed. See above for details."
 * 
 * If you need support, post the output of 'emerge --info =sci-chemistry/mosflm-7.0.6',
 * the complete build log and the output of 'emerge -pqv =sci-chemistry/mosflm-7.0.6'.
 * The complete build log is located at '/var/log/portage/build/sci-chemistry/mosflm-7.0.6:20100213-222804.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/mosflm-7.0.6/temp/environment'.
 * S: '/var/tmp/portage/sci-chemistry/mosflm-7.0.6/work/mosflm706'

>>> Install mosflm-7.0.6 into /var/tmp/portage/sci-chemistry/mosflm-7.0.6/image/ category sci-chemistry
>>> Completed installing mosflm-7.0.6 into /var/tmp/portage/sci-chemistry/mosflm-7.0.6/image/

 * Tinderbox QA Warning! Possibly bundled libraries
jpeg_mem_init  /var/tmp/portage/sci-chemistry/mosflm-7.0.6/image/usr/bin/ipmosflm
 * Tinderbox QA Warning (end)! Possibly bundled libraries
 * QA Notice: make jobserver unavailable:
 * 
 * 	make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 * 	make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/ipmosflm
 * Removing /usr/share/doc
 * Removing /usr/share/info
Merge of sci-chemistry/mosflm-7.0.6 at 2010-02-13T22:28:04+00:00
failed
tinderbox_qa_warn