/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/config.log

config.log (text/plain), 102.92 KB, created by Juergen Rose on 2010-01-24 12:58:18 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by netCDF configure 4.0.1, which was
generated by GNU Autoconf 2.65.  Invocation command line was

  $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --docdir=/usr/share/doc/netcdf-4.0.1 --enable-shared --enable-f77 --enable-f90 --enable-separate-fortran --enable-netcdf-4 --enable-ncgen4 --enable-docs-install --with-hdf5=/usr --with-zlib=/usr --with-szlib=/usr

## --------- ##
## Platform. ##
## --------- ##

hostname = orca
uname -m = x86_64
uname -r = 2.6.32-gentoo-r2
uname -s = Linux
uname -v = #1 SMP Fri Jan 22 11:03:01 CET 2010

/usr/bin/uname -p = Intel(R) Xeon(R) CPU W3520 @ 2.67GHz
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib64/portage/bin/ebuild-helpers
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /opt/bin
PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4
PATH: /usr/qt/3/bin
PATH: /usr/lib64/subversion/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:3194: netCDF 4.0.1
configure:3228: checking build system type
configure:3242: result: x86_64-pc-linux-gnu
configure:3262: checking host system type
configure:3275: result: x86_64-pc-linux-gnu
configure:3320: checking for a BSD-compatible install
configure:3388: result: /usr/bin/install -c
configure:3399: checking whether build environment is sane
configure:3436: result: yes
configure:3563: checking for a thread-safe mkdir -p
configure:3602: result: /bin/mkdir -p
configure:3615: checking for gawk
configure:3631: found /usr/bin/gawk
configure:3642: result: gawk
configure:3653: checking whether make sets $(MAKE)
configure:3675: result: yes
configure:3759: checking user options
configure:3802: checking whether CXX is set to ''
configure:3806: result: no
configure:3810: checking whether FC is set to ''
configure:3814: result: no
configure:3818: checking whether F90 is set to ''
configure:3822: result: no
configure:3826: checking whether a NCIO_MINBLOCKSIZE was specified
configure:3836: result: 256
configure:3846: checking whether this is a netCDF-4.x build
configure:3854: result: yes
configure:3858: checking whether extra valgrind tests should be run
configure:3866: result: no
configure:3872: Processing NetCDF-4 options.
configure:3877: checking whether netCDF-4 is to be built
configure:3885: result: yes
configure:3897: checking whether new netCDF-4 C++ API is to be built
configure:3905: result: no
configure:3909: checking whether HDF5 should do data conversions
configure:3917: result: no
configure:3926: checking whether extra example tests should be run
configure:3934: result: no
configure:3938: checking whether parallel IO tests should be run
configure:3946: result: no
configure:3950: checking whether a location for the HDF5 library was specified
configure:3958: result: /usr
configure:3964: checking whether a location for the ZLIB library was specified
configure:3972: result: /usr
configure:3978: checking whether a location for the SZLIB library was specified
configure:3986: result: /usr
configure:3992: checking whether a default cache size for HDF5 was specified
configure:4002: result: 32000000
configure:4011: checking whether a default cache maximum number of elements for HDF5 was specified
configure:4021: result: 1000
configure:4030: checking whether a default cache preemption for HDF5 was specified
configure:4040: result: 0.75
configure:4049: checking whether netCDF-4 logging is enabled
configure:4057: result: no
configure:4075: checking whether DAP client is to be built
configure:4083: result: no
configure:4105: checking whether dap remote testing should be enabled
configure:4113: result: no
configure:4216: checking whether netCDF extra tests should be run (developers only)
configure:4224: result: no
configure:4241: checking whether documentation is to be installed
configure:4249: result: yes
configure:4261: checking whether Fortran compiler(s) should be tested during configure
configure:4269: result: yes
configure:4273: checking whether FFIO will be used
configure:4281: result: no
configure:4297: checking whether to skip C++, F77, or F90 APIs if compiler is broken
configure:4305: result: yes
configure:4309: checking whether only the C library is desired
configure:4317: result: no
configure:4336: checking whether examples should be built
configure:4344: result: yes
configure:4348: checking whether F77 API is desired
configure:4357: result: yes
configure:4362: checking whether F90 API is desired
configure:4372: result: yes
configure:4376: checking whether fortran type sizes should be checked
configure:4384: result: yes
configure:4390: checking whether C API is desired
configure:4398: result: yes
configure:4405: checking where to get netCDF C-only library for separate fortran libraries
configure:4421: result: 
configure:4433: checking whether CXX API is desired
configure:4442: result: yes
configure:4451: checking whether v2 netCDF API should be built
configure:4459: result: yes
configure:4478: checking whether the ncgen/ncdump should be built
configure:4487: result: yes
configure:4499: checking whether large file (> 2GB) tests should be run
configure:4507: result: no
configure:4524: checking whether benchmaks should be run (experimental)
configure:4532: result: no
configure:4544: checking whether extreme numbers should be used in tests
configure:4559: result: yes
configure:4571: checking where to put large temp files if large file tests are run
configure:4580: result: .
configure:4591: checking whether a win32 DLL is desired
configure:4599: result: no
configure:4621: checking whether separate fortran libs are desired
configure:4630: result: yes
configure:4698: finding C compiler
configure:4711: checking for x86_64-pc-linux-gnu-xlc
configure:4741: result: no
configure:4711: checking for x86_64-pc-linux-gnu-cc
configure:4741: result: no
configure:4711: checking for x86_64-pc-linux-gnu-c89
configure:4741: result: no
configure:4711: checking for x86_64-pc-linux-gnu-acc
configure:4741: result: no
configure:4711: checking for x86_64-pc-linux-gnu-gcc
configure:4727: found /usr/bin/x86_64-pc-linux-gnu-gcc
configure:4738: result: x86_64-pc-linux-gnu-gcc
configure:4813: checking for C compiler version
configure:4822: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4833: $? = 0
configure:4822: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:4833: $? = 0
configure:4822: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: '-V' option must have argument
configure:4833: $? = 1
configure:4822: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gcc: no input files
configure:4833: $? = 1
configure:4853: checking whether the C compiler works
configure:4875: x86_64-pc-linux-gnu-gcc -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:4879: $? = 0
configure:4928: result: yes
configure:4931: checking for C compiler default output file name
configure:4933: result: a.out
configure:4939: checking for suffix of executables
configure:4946: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:4950: $? = 0
configure:4972: result: 
configure:4994: checking whether we are cross compiling
configure:5002: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:5006: $? = 0
configure:5013: ./conftest
configure:5017: $? = 0
configure:5032: result: no
configure:5037: checking for suffix of object files
configure:5059: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:5063: $? = 0
configure:5084: result: o
configure:5088: checking whether we are using the GNU C compiler
configure:5107: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:5107: $? = 0
configure:5116: result: yes
configure:5125: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:5145: x86_64-pc-linux-gnu-gcc -c -g  conftest.c >&5
configure:5145: $? = 0
configure:5186: result: yes
configure:5203: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:5267: x86_64-pc-linux-gnu-gcc  -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:5267: $? = 0
configure:5280: result: none needed
configure:5311: checking for style of include used by make
configure:5339: result: GNU
configure:5364: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:5474: result: gcc3
configure:5490: checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together
configure:5521: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o >&5
configure:5525: $? = 0
configure:5531: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o >&5
configure:5535: $? = 0
configure:5546: cc -c conftest.c >&5
configure:5550: $? = 0
configure:5558: cc -c conftest.c -o conftest2.o >&5
configure:5562: $? = 0
configure:5568: cc -c conftest.c -o conftest2.o >&5
configure:5572: $? = 0
configure:5590: result: yes
configure:5616: checking for an ANSI C-conforming const
configure:5681: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:5681: $? = 0
configure:5688: result: yes
configure:5717: finding Fortran compiler (will not be used if Fortran API is not desired)
configure:5953: checking for x86_64-pc-linux-gnu-xlf90
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-fort
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-xlf95
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-ifort
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-ifc
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-efc
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-pgf95
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-lf95
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-g95
configure:5983: result: no
configure:5953: checking for x86_64-pc-linux-gnu-gfortran
configure:5969: found /usr/bin/x86_64-pc-linux-gnu-gfortran
configure:5980: result: x86_64-pc-linux-gnu-gfortran
configure:6050: checking for Fortran compiler version
configure:6059: x86_64-pc-linux-gnu-gfortran --version >&5
GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:6070: $? = 0
configure:6059: x86_64-pc-linux-gnu-gfortran -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:6070: $? = 0
configure:6059: x86_64-pc-linux-gnu-gfortran -V >&5
x86_64-pc-linux-gnu-gfortran: '-V' option must have argument
configure:6070: $? = 1
configure:6059: x86_64-pc-linux-gnu-gfortran -qversion >&5
x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gfortran: no input files
configure:6070: $? = 1
configure:6079: checking whether we are using the GNU Fortran compiler
configure:6092: x86_64-pc-linux-gnu-gfortran -c   conftest.F >&5
configure:6092: $? = 0
configure:6101: result: yes
configure:6107: checking whether x86_64-pc-linux-gnu-gfortran accepts -g
configure:6118: x86_64-pc-linux-gnu-gfortran -c -g  conftest.f >&5
configure:6118: $? = 0
configure:6126: result: yes
configure:6173: checking for x86_64-pc-linux-gnu-xlf
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-fort
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-xlf95
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-ifort
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-ifc
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-efc
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-pgf77
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-lf95
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-g95
configure:6203: result: no
configure:6173: checking for x86_64-pc-linux-gnu-gfortran
configure:6189: found /usr/bin/x86_64-pc-linux-gnu-gfortran
configure:6200: result: x86_64-pc-linux-gnu-gfortran
configure:6270: checking for Fortran 77 compiler version
configure:6279: x86_64-pc-linux-gnu-gfortran --version >&5
GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:6290: $? = 0
configure:6279: x86_64-pc-linux-gnu-gfortran -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:6290: $? = 0
configure:6279: x86_64-pc-linux-gnu-gfortran -V >&5
x86_64-pc-linux-gnu-gfortran: '-V' option must have argument
configure:6290: $? = 1
configure:6279: x86_64-pc-linux-gnu-gfortran -qversion >&5
x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gfortran: no input files
configure:6290: $? = 1
configure:6299: checking whether we are using the GNU Fortran 77 compiler
configure:6312: x86_64-pc-linux-gnu-gfortran -c  conftest.F >&5
configure:6312: $? = 0
configure:6321: result: yes
configure:6327: checking whether x86_64-pc-linux-gnu-gfortran accepts -g
configure:6338: x86_64-pc-linux-gnu-gfortran -c -g conftest.f >&5
configure:6338: $? = 0
configure:6346: result: yes
configure:6392: setting up Fortran 90
configure:6411: checking for Fortran flag to compile .f90 files
configure:6427: x86_64-pc-linux-gnu-gfortran -c -g -O2  conftest.f90 >&5
configure:6427: $? = 0
configure:6436: result: none
configure:6464: checking fortran 90 modules inclusion flag
configure:6489: x86_64-pc-linux-gnu-gfortran -c -g -O2  conftest.f90 >&5
configure:6489: $? = 0
configure:6506: x86_64-pc-linux-gnu-gfortran -c -g -O2 -Itmpdir_0  conftest.f90 >&5
configure:6506: $? = 0
configure:6525: result: -I
configure:6537: checking if Fortran compiler can handle Fortran-90
configure:6545: x86_64-pc-linux-gnu-gfortran  -g -O2  conftest.f90
configure:6548: $? = 0
configure:6560: result: yes
configure:6569: finding C++ compiler (will not be used if C++ API is not desired)
configure:6593: checking for x86_64-pc-linux-gnu-cl
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-KCC
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-CC
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-cxx
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-cc++
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-xlC
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-aCC
configure:6623: result: no
configure:6593: checking for x86_64-pc-linux-gnu-c++
configure:6609: found /usr/bin/x86_64-pc-linux-gnu-c++
configure:6620: result: x86_64-pc-linux-gnu-c++
configure:6691: checking for C++ compiler version
configure:6700: x86_64-pc-linux-gnu-c++ --version >&5
x86_64-pc-linux-gnu-c++ (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6711: $? = 0
configure:6700: x86_64-pc-linux-gnu-c++ -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:6711: $? = 0
configure:6700: x86_64-pc-linux-gnu-c++ -V >&5
x86_64-pc-linux-gnu-c++: '-V' option must have argument
configure:6711: $? = 1
configure:6700: x86_64-pc-linux-gnu-c++ -qversion >&5
x86_64-pc-linux-gnu-c++: unrecognized option '-qversion'
x86_64-pc-linux-gnu-c++: no input files
configure:6711: $? = 1
configure:6715: checking whether we are using the GNU C++ compiler
configure:6734: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.cpp >&5
configure:6734: $? = 0
configure:6743: result: yes
configure:6752: checking whether x86_64-pc-linux-gnu-c++ accepts -g
configure:6772: x86_64-pc-linux-gnu-c++ -c -g  conftest.cpp >&5
configure:6772: $? = 0
configure:6813: result: yes
configure:6838: checking dependency style of x86_64-pc-linux-gnu-c++
configure:6948: result: gcc3
configure:7019: setting up libtool
configure:7048: checking for a sed that does not truncate output
configure:7112: result: /bin/sed
configure:7130: checking for grep that handles long lines and -e
configure:7188: result: /bin/grep
configure:7193: checking for egrep
configure:7255: result: /bin/grep -E
configure:7260: checking for fgrep
configure:7322: result: /bin/grep -F
configure:7357: checking for ld used by x86_64-pc-linux-gnu-gcc
configure:7424: result: /usr/x86_64-pc-linux-gnu/bin/ld
configure:7431: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld
configure:7446: result: yes
configure:7458: checking for BSD- or MS-compatible name lister (nm)
configure:7507: result: /usr/bin/nm -B
configure:7625: checking the name lister (/usr/bin/nm -B) interface
configure:7632: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:7635: /usr/bin/nm -B "conftest.o"
configure:7638: output
0000000000000000 B some_variable
configure:7645: result: BSD nm
configure:7648: checking whether ln -s works
configure:7652: result: yes
configure:7660: checking the maximum length of command line arguments
configure:7780: result: 1572864
configure:7797: checking whether the shell understands some XSI constructs
configure:7807: result: yes
configure:7811: checking whether the shell understands "+="
configure:7817: result: yes
configure:7852: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files
configure:7859: result: -r
configure:7888: checking for x86_64-pc-linux-gnu-objdump
configure:7904: found /usr/bin/x86_64-pc-linux-gnu-objdump
configure:7915: result: x86_64-pc-linux-gnu-objdump
configure:7987: checking how to recognize dependent libraries
configure:8183: result: pass_all
configure:8203: checking for x86_64-pc-linux-gnu-ar
configure:8219: found /usr/bin/x86_64-pc-linux-gnu-ar
configure:8230: result: x86_64-pc-linux-gnu-ar
configure:8308: checking for x86_64-pc-linux-gnu-strip
configure:8324: found /usr/bin/x86_64-pc-linux-gnu-strip
configure:8335: result: x86_64-pc-linux-gnu-strip
configure:8407: checking for x86_64-pc-linux-gnu-ranlib
configure:8423: found /usr/bin/x86_64-pc-linux-gnu-ranlib
configure:8434: result: x86_64-pc-linux-gnu-ranlib
configure:8564: checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object
configure:8682: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:8685: $? = 0
configure:8689: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:8692: $? = 0
configure:8746: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c conftstm.o >&5
configure:8749: $? = 0
configure:8787: result: ok
configure:8882: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:8885: $? = 0
configure:9595: checking how to run the C preprocessor
configure:9626: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:9626: $? = 0
configure:9640: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:20:28: error: ac_nonexistent.h: No such file or directory
configure:9640: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:9665: result: x86_64-pc-linux-gnu-gcc -E
configure:9685: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:9685: $? = 0
configure:9699: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:20:28: error: ac_nonexistent.h: No such file or directory
configure:9699: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:9728: checking for ANSI C header files
configure:9748: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9748: $? = 0
configure:9821: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:9821: $? = 0
configure:9821: ./conftest
configure:9821: $? = 0
configure:9832: result: yes
configure:9845: checking for sys/types.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for sys/stat.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for stdlib.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for string.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for memory.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for strings.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for inttypes.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for stdint.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9845: checking for unistd.h
configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9845: $? = 0
configure:9845: result: yes
configure:9860: checking for dlfcn.h
configure:9860: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:9860: $? = 0
configure:9860: result: yes
configure:9985: checking for C++ compiler version
configure:9994: x86_64-pc-linux-gnu-c++ --version >&5
x86_64-pc-linux-gnu-c++ (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:10005: $? = 0
configure:9994: x86_64-pc-linux-gnu-c++ -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:10005: $? = 0
configure:9994: x86_64-pc-linux-gnu-c++ -V >&5
x86_64-pc-linux-gnu-c++: '-V' option must have argument
configure:10005: $? = 1
configure:9994: x86_64-pc-linux-gnu-c++ -qversion >&5
x86_64-pc-linux-gnu-c++: unrecognized option '-qversion'
x86_64-pc-linux-gnu-c++: no input files
configure:10005: $? = 1
configure:10009: checking whether we are using the GNU C++ compiler
configure:10037: result: yes
configure:10046: checking whether x86_64-pc-linux-gnu-c++ accepts -g
configure:10107: result: yes
configure:10132: checking dependency style of x86_64-pc-linux-gnu-c++
configure:10242: result: gcc3
configure:10265: checking how to run the C++ preprocessor
configure:10292: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
configure:10292: $? = 0
configure:10306: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
conftest.cpp:31:28: error: ac_nonexistent.h: No such file or directory
configure:10306: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10331: result: x86_64-pc-linux-gnu-c++ -E
configure:10351: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
configure:10351: $? = 0
configure:10365: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
conftest.cpp:31:28: error: ac_nonexistent.h: No such file or directory
configure:10365: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10409: checking for x86_64-pc-linux-gnu-g77
configure:10436: result: x86_64-pc-linux-gnu-gfortran
configure:10506: checking for Fortran 77 compiler version
configure:10515: x86_64-pc-linux-gnu-gfortran --version >&5
GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:10526: $? = 0
configure:10515: x86_64-pc-linux-gnu-gfortran -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:10526: $? = 0
configure:10515: x86_64-pc-linux-gnu-gfortran -V >&5
x86_64-pc-linux-gnu-gfortran: '-V' option must have argument
configure:10526: $? = 1
configure:10515: x86_64-pc-linux-gnu-gfortran -qversion >&5
x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gfortran: no input files
configure:10526: $? = 1
configure:10535: checking whether we are using the GNU Fortran 77 compiler
configure:10557: result: yes
configure:10563: checking whether x86_64-pc-linux-gnu-gfortran accepts -g
configure:10582: result: yes
configure:10628: checking for x86_64-pc-linux-gnu-gfortran
configure:10655: result: x86_64-pc-linux-gnu-gfortran
configure:10725: checking for Fortran compiler version
configure:10734: x86_64-pc-linux-gnu-gfortran --version >&5
GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4
Copyright (C) 2008 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:10745: $? = 0
configure:10734: x86_64-pc-linux-gnu-gfortran -v >&5
Using built-in specs.
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5'
Thread model: posix
gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) 
configure:10745: $? = 0
configure:10734: x86_64-pc-linux-gnu-gfortran -V >&5
x86_64-pc-linux-gnu-gfortran: '-V' option must have argument
configure:10745: $? = 1
configure:10734: x86_64-pc-linux-gnu-gfortran -qversion >&5
x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gfortran: no input files
configure:10745: $? = 1
configure:10754: checking whether we are using the GNU Fortran compiler
configure:10776: result: yes
configure:10782: checking whether x86_64-pc-linux-gnu-gfortran accepts -g
configure:10801: result: yes
configure:10973: checking for objdir
configure:10988: result: .libs
configure:11284: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions
configure:11302: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:11306: $? = 0
configure:11319: result: no
configure:11339: checking for x86_64-pc-linux-gnu-gcc option to produce PIC
configure:11611: result: -fPIC -DPIC
configure:11623: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works
configure:11641: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -fPIC -DPIC -DPIC conftest.c >&5
configure:11645: $? = 0
configure:11658: result: yes
configure:11682: checking if x86_64-pc-linux-gnu-gcc static flag -static works
configure:11710: result: yes
configure:11725: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:11746: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -o out/conftest2.o conftest.c >&5
configure:11750: $? = 0
configure:11772: result: yes
configure:11780: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:11827: result: yes
configure:11860: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:12846: result: yes
configure:12883: checking whether -lc should be explicitly linked in
configure:12888: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:12891: $? = 0
configure:12906: x86_64-pc-linux-gnu-gcc -shared conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:12909: $? = 0
configure:12921: result: no
configure:13085: checking dynamic linker characteristics
configure:13531: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:13531: $? = 0
configure:13749: result: GNU/Linux ld.so
configure:13851: checking how to hardcode library paths into programs
configure:13876: result: immediate
configure:14396: checking whether stripping libraries is possible
configure:14401: result: yes
configure:14436: checking if libtool supports shared libraries
configure:14438: result: yes
configure:14441: checking whether to build shared libraries
configure:14462: result: yes
configure:14465: checking whether to build static libraries
configure:14469: result: yes
configure:14619: checking for ld used by x86_64-pc-linux-gnu-c++
configure:14686: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
configure:14693: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld
configure:14708: result: yes
configure:14763: checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:15676: result: yes
configure:15704: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.cpp >&5
configure:15707: $? = 0
configure:15889: checking for x86_64-pc-linux-gnu-c++ option to produce PIC
configure:16206: result: -fPIC -DPIC
configure:16215: checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works
configure:16233: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -fPIC -DPIC -DPIC conftest.cpp >&5
configure:16237: $? = 0
configure:16250: result: yes
configure:16271: checking if x86_64-pc-linux-gnu-c++ static flag -static works
configure:16299: result: yes
configure:16311: checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o
configure:16332: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -o out/conftest2.o conftest.cpp >&5
configure:16336: $? = 0
configure:16358: result: yes
configure:16363: checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o
configure:16410: result: yes
configure:16440: checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:16466: result: yes
configure:16603: checking dynamic linker characteristics
configure:16997: x86_64-pc-linux-gnu-c++ -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.cpp  >&5
configure:16997: $? = 0
configure:17215: result: GNU/Linux ld.so
configure:17266: checking how to hardcode library paths into programs
configure:17291: result: immediate
configure:17432: checking if libtool supports shared libraries
configure:17434: result: yes
configure:17437: checking whether to build shared libraries
configure:17457: result: yes
configure:17460: checking whether to build static libraries
configure:17464: result: yes
configure:17478: checking for x86_64-pc-linux-gnu-gfortran option to produce PIC
configure:17750: result: -fPIC
configure:17759: checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works
configure:17777: x86_64-pc-linux-gnu-gfortran -c -g -O2 -fPIC conftest.f >&5
configure:17781: $? = 0
configure:17794: result: yes
configure:17815: checking if x86_64-pc-linux-gnu-gfortran static flag -static works
configure:17843: result: yes
configure:17855: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o
configure:17876: x86_64-pc-linux-gnu-gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:17880: $? = 0
configure:17902: result: yes
configure:17907: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o
configure:17954: result: yes
configure:17984: checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:18957: result: yes
configure:19094: checking dynamic linker characteristics
configure:19482: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.f  >&5
configure:19482: $? = 0
configure:19700: result: GNU/Linux ld.so
configure:19751: checking how to hardcode library paths into programs
configure:19776: result: immediate
configure:19912: checking if libtool supports shared libraries
configure:19914: result: yes
configure:19917: checking whether to build shared libraries
configure:19937: result: yes
configure:19940: checking whether to build static libraries
configure:19944: result: yes
configure:19970: x86_64-pc-linux-gnu-gfortran -c -g -O2  conftest.f90 >&5
configure:19973: $? = 0
configure:20083: checking for x86_64-pc-linux-gnu-gfortran option to produce PIC
configure:20355: result: -fPIC
configure:20364: checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works
configure:20382: x86_64-pc-linux-gnu-gfortran -c -g -O2 -fPIC  conftest.f90 >&5
configure:20386: $? = 0
configure:20399: result: yes
configure:20420: checking if x86_64-pc-linux-gnu-gfortran static flag -static works
configure:20448: result: yes
configure:20460: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o
configure:20481: x86_64-pc-linux-gnu-gfortran -c -g -O2 -o out/conftest2.o  conftest.f90 >&5
configure:20485: $? = 0
configure:20507: result: yes
configure:20512: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o
configure:20559: result: yes
configure:20589: checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:21562: result: yes
configure:21699: checking dynamic linker characteristics
configure:22087: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 -Wl,-rpath -Wl,/foo  conftest.f90  >&5
configure:22087: $? = 0
configure:22305: result: GNU/Linux ld.so
configure:22356: checking how to hardcode library paths into programs
configure:22381: result: immediate
configure:22429: finding other utilities
configure:22435: trying to set fortran flags for this platform
configure:22541: checking if we need to set _LARGE_FILES despite results of previous tests
configure:22566: result: _LARGE_FILES=
configure:22576: checking for special C compiler options needed for large files
configure:22621: result: no
configure:22627: checking for _FILE_OFFSET_BITS value needed for large files
configure:22652: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:22652: $? = 0
configure:22684: result: no
configure:22768: displaying some results
configure:22774: checking CPPFLAGS
configure:22776: result: 
configure:22778: checking CC CFLAGS
configure:22780: result: x86_64-pc-linux-gnu-gcc -march=core2 -msse4 -mcx16 -msahf -O2 -pipe
configure:22783: checking type x86_64-pc-linux-gnu-gcc
configure:22785: result: x86_64-pc-linux-gnu-gcc is /usr/bin/x86_64-pc-linux-gnu-gcc
configure:22788: checking CXX
configure:22791: result: x86_64-pc-linux-gnu-c++
configure:22793: checking CXXFLAGS
configure:22795: result: -march=core2 -msse4 -mcx16 -msahf -O2 -pipe
configure:22798: checking type x86_64-pc-linux-gnu-c++
configure:22800: result: x86_64-pc-linux-gnu-c++ is /usr/bin/x86_64-pc-linux-gnu-c++
configure:22807: checking FC
configure:22810: result: x86_64-pc-linux-gnu-gfortran
configure:22812: checking FFLAGS
configure:22814: result: -g -O2
configure:22817: checking type x86_64-pc-linux-gnu-gfortran
configure:22819: result: x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran
configure:22826: checking F90
configure:22829: result: x86_64-pc-linux-gnu-gfortran
configure:22831: checking FCFLAGS
configure:22833: result: -g -O2
configure:22836: checking type x86_64-pc-linux-gnu-gfortran
configure:22838: result: x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran
configure:22845: checking AR
configure:22848: result: x86_64-pc-linux-gnu-ar
configure:22850: checking AR_FLAGS
configure:22852: result: cru
configure:22855: checking type x86_64-pc-linux-gnu-ar
configure:22857: result: x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar
configure:22864: checking NM
configure:22867: result: /usr/bin/nm -B
configure:22869: checking NMFLAGS
configure:22871: result: 
configure:22943: checking for /usr/bin/nm
configure:22970: result: /usr/bin/nm -B
configure:22983: checking nm flags
configure:22988: result: 
configure:23000: checking for C-equivalent to Fortran routine "SUB"
configure:23007: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f
configure:23010: $? = 0
configure:23020: result: sub_
configure:23040: checking for Fortran "byte"
configure:23048: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f
configure:23051: $? = 0
configure:23053: result: yes
configure:23071: checking for Fortran "integer*2"
configure:23079: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f
configure:23082: $? = 0
configure:23084: result: yes
configure:23111: checking if Fortran "byte" is C "signed char"
configure:23121: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23124: $? = 0
configure:23127: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23130: $? = 0
configure:23133: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23136: $? = 0
configure:23139: ./conftest
configure:23142: $? = 0
configure:23144: result: yes
configure:23178: checking if Fortran "byte" is C "short"
configure:23188: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23191: $? = 0
configure:23194: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23197: $? = 0
configure:23200: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23203: $? = 0
configure:23206: ./conftest
configure:23209: $? = 1
configure:23222: result: no
configure:23245: checking if Fortran "byte" is C "int"
configure:23255: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23258: $? = 0
configure:23261: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23264: $? = 0
configure:23267: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23270: $? = 0
configure:23273: ./conftest
configure:23276: $? = 1
configure:23289: result: no
configure:23312: checking if Fortran "byte" is C "long"
configure:23322: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23325: $? = 0
configure:23328: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23331: $? = 0
configure:23334: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23337: $? = 0
configure:23340: ./conftest
configure:23343: $? = 1
configure:23356: result: no
configure:23383: checking if Fortran "integer*2" is C "short"
configure:23393: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23396: $? = 0
configure:23399: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23402: $? = 0
configure:23405: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23408: $? = 0
configure:23411: ./conftest
configure:23414: $? = 0
configure:23416: result: yes
configure:23450: checking if Fortran "integer*2" is C "int"
configure:23460: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23463: $? = 0
configure:23466: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23469: $? = 0
configure:23472: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23475: $? = 0
configure:23478: ./conftest
configure:23481: $? = 1
configure:23494: result: no
configure:23517: checking if Fortran "integer*2" is C "long"
configure:23527: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23530: $? = 0
configure:23533: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23536: $? = 0
configure:23539: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23542: $? = 0
configure:23545: ./conftest
configure:23548: $? = 1
configure:23561: result: no
configure:23586: checking if Fortran "integer" is C "int"
configure:23596: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23599: $? = 0
configure:23602: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23605: $? = 0
configure:23608: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23611: $? = 0
configure:23614: ./conftest
configure:23617: $? = 0
configure:23619: result: yes
configure:23653: checking if Fortran "real" is C "float"
configure:23663: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23666: $? = 0
configure:23669: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23672: $? = 0
configure:23675: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23678: $? = 0
configure:23681: ./conftest
configure:23684: $? = 0
configure:23686: result: yes
configure:23720: checking if Fortran "doubleprecision" is C "double"
configure:23730: x86_64-pc-linux-gnu-gcc -c  -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit'
configure:23733: $? = 0
configure:23736: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f
configure:23739: $? = 0
configure:23742: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o  
configure:23745: $? = 0
configure:23748: ./conftest
configure:23751: $? = 0
configure:23753: result: yes
configure:23781: checking for Fortran-equivalent to netCDF "byte"
configure:23789: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f
configure:23792: $? = 0
configure:23803: result: byte
configure:23809: checking for Fortran-equivalent to netCDF "short"
configure:23817: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f
configure:23820: $? = 0
configure:23831: result: integer*2
configure:23878: checking if Fortran 90 compiler capitalizes .mod filenames
configure:23885: x86_64-pc-linux-gnu-gfortran  conftest.f90 >&5
/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/libgfortranbegin.a(fmain.o): In function `main':
(.text+0x28): undefined reference to `MAIN__'
collect2: ld returned 1 exit status
configure:23888: $? = 1
configure:23896: result: no
configure:23917: checking types, headers, and functions
configure:23920: checking for stdlib.h
configure:23920: result: yes
configure:23930: checking for sys/types.h
configure:23930: result: yes
configure:23942: checking locale.h usability
configure:23942: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:23942: $? = 0
configure:23942: result: yes
configure:23942: checking locale.h presence
configure:23942: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:23942: $? = 0
configure:23942: result: yes
configure:23942: checking for locale.h
configure:23942: result: yes
configure:23954: checking for stdbool.h that conforms to C99
configure:24039: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24039: $? = 0
configure:24046: result: yes
configure:24048: checking for _Bool
configure:24048: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24048: $? = 0
configure:24048: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:79: error: expected expression before ')' token
configure:24048: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((_Bool)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:24048: result: yes
configure:24069: checking for strlcat
configure:24069: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
/var/tmp/portage/sci-libs/netcdf-4.0.1/temp/ccjM58Hb.o: In function `main':
conftest.c:(.text+0x7): undefined reference to `strlcat'
collect2: ld returned 1 exit status
configure:24069: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| /* end confdefs.h.  */
| /* Define strlcat to an innocuous variant, in case <limits.h> declares strlcat.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strlcat innocuous_strlcat
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strlcat (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef strlcat
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strlcat ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strlcat || defined __stub___strlcat
| choke me
| #endif
| 
| int
| main ()
| {
| return strlcat ();
|   ;
|   return 0;
| }
configure:24069: result: no
configure:24069: checking for strerror
configure:24069: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24069: $? = 0
configure:24069: result: yes
configure:24069: checking for snprintf
configure:24069: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
conftest.c:69: warning: conflicting types for built-in function 'snprintf'
configure:24069: $? = 0
configure:24069: result: yes
configure:24081: checking for working alloca.h
configure:24098: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24098: $? = 0
configure:24106: result: yes
configure:24114: checking for alloca
configure:24151: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24151: $? = 0
configure:24159: result: yes
configure:24269: checking whether isnan is declared
configure:24269: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24269: $? = 0
configure:24269: result: yes
configure:24280: checking whether isinf is declared
configure:24280: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24280: $? = 0
configure:24280: result: yes
configure:24291: checking whether isfinite is declared
configure:24291: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24291: $? = 0
configure:24291: result: yes
configure:24302: checking whether signbit is declared
configure:24302: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24302: $? = 0
configure:24302: result: yes
configure:24320: checking for long long int
configure:24360: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24360: $? = 0
configure:24390: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24390: $? = 0
configure:24390: ./conftest
configure:24390: $? = 0
configure:24405: result: yes
configure:24414: checking for unsigned long long int
configure:24454: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24454: $? = 0
configure:24462: result: yes
configure:24475: checking for struct stat.st_blksize
configure:24475: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24475: $? = 0
configure:24475: result: yes
configure:24489: checking for IEEE floating point format
configure:24527: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24527: $? = 0
configure:24527: ./conftest
configure:24527: $? = 0
configure:24536: result: yes
configure:24544: checking for size_t
configure:24544: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24544: $? = 0
configure:24544: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:93: error: expected expression before ')' token
configure:24544: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:24544: result: yes
configure:24555: checking for off_t
configure:24555: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24555: $? = 0
configure:24555: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:93: error: expected expression before ')' token
configure:24555: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((off_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:24555: result: yes
configure:24566: checking for ssize_t
configure:24566: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24566: $? = 0
configure:24566: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:93: error: expected expression before ')' token
configure:24566: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ssize_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:24566: result: yes
configure:24575: checking for ptrdiff_t
configure:24575: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24575: $? = 0
configure:24575: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:94: error: expected expression before ')' token
configure:24575: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ptrdiff_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:24575: result: yes
configure:24584: checking for uchar
configure:24584: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:95: error: 'uchar' undeclared (first use in this function)
conftest.c:95: error: (Each undeclared identifier is reported only once
conftest.c:95: error: for each function it appears in.)
configure:24584: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (uchar))
| 	 return 0;
|   ;
|   return 0;
| }
configure:24584: result: no
configure:24597: checking whether char is unsigned
configure:24615: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24615: $? = 0
configure:24622: result: no
configure:24629: checking whether byte ordering is bigendian
configure:24644: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c:60: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'a'
configure:24644: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #ifndef __APPLE_CC__
| 	       not a universal capable compiler
| 	     #endif
| 	     typedef int dummy;
| 
configure:24689: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
configure:24689: $? = 0
configure:24707: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:66: error: 'not' undeclared (first use in this function)
conftest.c:66: error: (Each undeclared identifier is reported only once
conftest.c:66: error: for each function it appears in.)
conftest.c:66: error: expected ';' before 'big'
configure:24707: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <sys/types.h>
| 		#include <sys/param.h>
| 
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| 		 not big endian
| 		#endif
| 
|   ;
|   return 0;
| }
configure:24835: result: no
configure:24857: checking size of short
configure:24862: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24862: $? = 0
configure:24862: ./conftest
configure:24862: $? = 0
configure:24877: result: 2
configure:24891: checking size of int
configure:24896: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24896: $? = 0
configure:24896: ./conftest
configure:24896: $? = 0
configure:24911: result: 4
configure:24925: checking size of long
configure:24930: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24930: $? = 0
configure:24930: ./conftest
configure:24930: $? = 0
configure:24945: result: 8
configure:24959: checking size of float
configure:24964: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24964: $? = 0
configure:24964: ./conftest
configure:24964: $? = 0
configure:24979: result: 4
configure:24993: checking size of double
configure:24998: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:24998: $? = 0
configure:24998: ./conftest
configure:24998: $? = 0
configure:25013: result: 8
configure:25027: checking size of off_t
configure:25032: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:25032: $? = 0
configure:25032: ./conftest
configure:25032: $? = 0
configure:25047: result: 8
configure:25061: checking size of size_t
configure:25066: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -Wl,-O1 conftest.c  >&5
configure:25066: $? = 0
configure:25066: ./conftest
configure:25066: $? = 0
configure:25081: result: 8
configure:25180: checking for manual-page index command
configure:25182: result: 
configure:25193: checking what to call the output of the ftpbin target
configure:25202: result: binary-netcdf-4.0.1_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar x86_64-pc-linux-gnu-gfortran x86_64-pc-linux-gnu-c++
configure:25205: checking binary distribution directory
configure:25213: result: /home/ftp/pub/binary/dummy_system
configure:25245: checking hdf5.h usability
configure:25245: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -I/usr/include conftest.c >&5
In file included from /usr/include/hdf5.h:24,
                 from conftest.c:99:
/usr/include/H5public.h:57:20: error: mpi.h: No such file or directory
/usr/include/H5public.h:59:21: error: mpio.h: No such file or directory
In file included from /usr/include/hdf5.h:46,
                 from conftest.c:99:
/usr/include/H5FDmpi.h:66: error: expected specifier-qualifier-list before 'MPI_Comm'
In file included from /usr/include/H5FDmpi.h:71,
                 from /usr/include/hdf5.h:46,
                 from conftest.c:99:
/usr/include/H5FDmpio.h:50: error: expected declaration specifiers or '...' before 'MPI_Comm'
/usr/include/H5FDmpio.h:50: error: expected declaration specifiers or '...' before 'MPI_Info'
/usr/include/H5FDmpio.h:51: error: expected declaration specifiers or '...' before 'MPI_Comm'
/usr/include/H5FDmpio.h:52: error: expected declaration specifiers or '...' before 'MPI_Info'
In file included from /usr/include/H5FDmpi.h:72,
                 from /usr/include/hdf5.h:46,
                 from conftest.c:99:
/usr/include/H5FDmpiposix.h:46: error: expected declaration specifiers or '...' before 'MPI_Comm'
/usr/include/H5FDmpiposix.h:47: error: expected declaration specifiers or '...' before 'MPI_Comm'
In file included from /usr/include/hdf5.h:46,
                 from conftest.c:99:
/usr/include/H5FDmpi.h:99: error: expected ')' before 'mpi_off'
/usr/include/H5FDmpi.h:100: error: expected declaration specifiers or '...' before 'MPI_Offset'
/usr/include/H5FDmpi.h:101: error: expected ')' before 'comm'
/usr/include/H5FDmpi.h:103: error: expected ')' before '*' token
/usr/include/H5FDmpi.h:108: error: expected declaration specifiers or '...' before 'MPI_Datatype'
/usr/include/H5FDmpi.h:109: error: expected declaration specifiers or '...' before 'MPI_Datatype'
/usr/include/H5FDmpi.h:115: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'H5FD_mpi_get_comm'
configure:25245: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <hdf5.h>
configure:25245: result: no
configure:25245: checking hdf5.h presence
configure:25245: x86_64-pc-linux-gnu-gcc -E  -I/usr/include conftest.c
In file included from /usr/include/hdf5.h:24,
                 from conftest.c:66:
/usr/include/H5public.h:57:20: error: mpi.h: No such file or directory
/usr/include/H5public.h:59:21: error: mpio.h: No such file or directory
configure:25245: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0.1"
| #define PACKAGE_STRING "netCDF 4.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.0.1"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define CHUNK_CACHE_SIZE 32000000
| #define CHUNK_CACHE_NELEMS 1000
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_RENAMEV3 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| /* end confdefs.h.  */
| #include <hdf5.h>
configure:25245: result: no
configure:25245: checking for hdf5.h
configure:25245: result: no
configure:25259: checking for H5Fflush in -lhdf5
configure:25284: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe  -I/usr/include -Wl,-O1 -L/usr/lib -L/usr/lib -L/usr/lib conftest.c -lhdf5  -lsz  -lm -lz -lhdf5 >&5
configure:25284: $? = 0
configure:25293: result: yes
configure:25310: error: Can't find the hdf5 header and/or library, or can't link a program       to it. HDF5 must be built with zlib; the location of zlib must be specified for netCDF-4 with the       --with-zlib option. If HDF5 was also built with szlib, then the location of szlib must also be       specified with the --with-slib option.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_char_unsigned=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_ieeefloat=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe'
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-Wl,-O1
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-pc-linux-gnu
ac_cv_env_host_alias_set=set
ac_cv_env_host_alias_value=x86_64-pc-linux-gnu
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_srcext_f90=none
ac_cv_func_alloca_works=yes
ac_cv_func_snprintf=yes
ac_cv_func_strerror=yes
ac_cv_func_strlcat=no
ac_cv_have_decl_isfinite=yes
ac_cv_have_decl_isinf=yes
ac_cv_have_decl_isnan=yes
ac_cv_have_decl_signbit=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=no
ac_cv_header_inttypes_h=yes
ac_cv_header_locale_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdbool_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_hdf5_H5Fflush=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=x86_64-pc-linux-gnu-ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc
ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E'
ac_cv_prog_CXX=x86_64-pc-linux-gnu-c++
ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-c++ -E'
ac_cv_prog_F77=x86_64-pc-linux-gnu-gfortran
ac_cv_prog_FC=x86_64-pc-linux-gnu-gfortran
ac_cv_prog_NM='/usr/bin/nm -B'
ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump
ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib
ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_x86_64_pc_linux_gnu_gcc_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f90_uppercase_mod=no
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int=4
ac_cv_sizeof_long=8
ac_cv_sizeof_off_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ac_cv_type__Bool=yes
ac_cv_type_long_long_int=yes
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
ac_cv_type_uchar=no
ac_cv_type_unsigned_long_long_int=yes
ac_cv_working_alloca_h=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
ax_cv_f90_modflag=-I
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld
lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_compiler_static_works_F77=yes
lt_cv_prog_compiler_static_works_FC=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/  {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run aclocal-1.10'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run tar'
AR='x86_64-pc-linux-gnu-ar'
AUTOCONF='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run autoconf'
AUTOHEADER='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run autoheader'
AUTOMAKE='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run automake-1.10'
AWK='gawk'
BINFILE_NAME='binary-netcdf-4.0.1_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar'
BUILD_BENCHMARKS_FALSE=''
BUILD_BENCHMARKS_TRUE='#'
BUILD_CXX4_FALSE=''
BUILD_CXX4_TRUE='#'
BUILD_CXX_FALSE='#'
BUILD_CXX_TRUE=''
BUILD_C_FALSE='#'
BUILD_C_TRUE=''
BUILD_DAP4_FALSE=''
BUILD_DAP4_TRUE=''
BUILD_DAP_FALSE=''
BUILD_DAP_TRUE='#'
BUILD_DLL_FALSE=''
BUILD_DLL_TRUE='#'
BUILD_EXAMPLES_FALSE=''
BUILD_EXAMPLES_TRUE=''
BUILD_F77_FALSE='#'
BUILD_F77_TRUE=''
BUILD_F90_FALSE='#'
BUILD_F90_TRUE=''
BUILD_NCGEN4_FALSE=''
BUILD_NCGEN4_TRUE=''
BUILD_PARALLEL_FALSE=''
BUILD_PARALLEL_TRUE=''
BUILD_SEPARATE_FORTRAN_FALSE='#'
BUILD_SEPARATE_FORTRAN_TRUE=''
BUILD_SHARED_FALSE='#'
BUILD_SHARED_TRUE=''
BUILD_UTILITIES_FALSE='#'
BUILD_UTILITIES_TRUE=''
BUILD_V2_FALSE='#'
BUILD_V2_TRUE=''
CC='x86_64-pc-linux-gnu-gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe'
CPP='x86_64-pc-linux-gnu-gcc -E'
CPPFLAGS=' -I/usr/include'
CROSS_COMPILING_FALSE=''
CROSS_COMPILING_TRUE='#'
CURLDIR=''
CURL_CFLAGS=''
CURL_LIBS=''
CXX='x86_64-pc-linux-gnu-c++'
CXXCPP='x86_64-pc-linux-gnu-c++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_DAP_REMOTE_TESTS_FALSE=''
ENABLE_DAP_REMOTE_TESTS_TRUE='#'
EXEEXT=''
EXTRA_EXAMPLE_TESTS_FALSE=''
EXTRA_EXAMPLE_TESTS_TRUE='#'
EXTRA_TESTS_FALSE=''
EXTRA_TESTS_TRUE='#'
F77='x86_64-pc-linux-gnu-gfortran'
FC='x86_64-pc-linux-gnu-gfortran'
FCFLAGS='-g -O2'
FCFLAGS_f90=''
FFLAGS='-g -O2'
FGREP='/bin/grep -F'
FTPBINDIR='/home/ftp/pub/binary/dummy_system'
GREP='/bin/grep'
HAS_CXX=''
HAS_DAP=''
HAS_F77=''
HAS_F90=''
HAS_NC2=''
HAS_NC4=''
HDF5DIR='/usr'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_DOCS_FALSE='#'
INSTALL_DOCS_TRUE=''
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INTERNAL_OCLIB_FALSE=''
INTERNAL_OCLIB_TRUE=''
LARGE_FILE_TESTS_FALSE=''
LARGE_FILE_TESTS_TRUE='#'
LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-O1 -L/usr/lib -L/usr/lib -L/usr/lib'
LIBOBJS=''
LIBS='-lhdf5 -lsz  -lm -lz -lhdf5'
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run makeinfo'
MAKEWHATIS_CMD=''
MKDIR_P='/bin/mkdir -p'
MOD_FLAG='-I'
NC_FLIBS=''
NC_LIBS=''
NETCDF_C_LIB=''
NM='/usr/bin/nm -B'
NMEDIT=''
NMFLAGS=''
OBJDUMP='x86_64-pc-linux-gnu-objdump'
OBJEXT='o'
OCLIB_CFLAGS=''
OCLIB_LIBS=''
OTOOL64=''
OTOOL=''
PACKAGE='netcdf'
PACKAGE_BUGREPORT='[e-mail]'
PACKAGE_NAME='netCDF'
PACKAGE_STRING='netCDF 4.0.1'
PACKAGE_TARNAME='netcdf'
PACKAGE_URL=''
PACKAGE_VERSION='4.0.1'
PATH_SEPARATOR=':'
RANLIB='x86_64-pc-linux-gnu-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHAREEXT='so'
SHELL='/bin/sh'
STRIP='x86_64-pc-linux-gnu-strip'
SZLIBDIR='/usr'
TEST_F77_FALSE='#'
TEST_F77_TRUE=''
TEST_PARALLEL_FALSE=''
TEST_PARALLEL_TRUE=''
UPPER_CASE_MOD_FALSE=''
UPPER_CASE_MOD_TRUE='#'
USE_FFIO_FALSE=''
USE_FFIO_TRUE='#'
USE_HDF5_DIR_FALSE='#'
USE_HDF5_DIR_TRUE=''
USE_LOGGING_FALSE=''
USE_LOGGING_TRUE='#'
USE_NETCDF4_FALSE='#'
USE_NETCDF4_TRUE=''
USE_NETCDF_C_LIB_DIR_FALSE=''
USE_NETCDF_C_LIB_DIR_TRUE='#'
USE_RENAMEV3_FALSE='#'
USE_RENAMEV3_TRUE=''
USE_SZLIB_DIR_FALSE='#'
USE_SZLIB_DIR_TRUE=''
USE_VALGRIND_TESTS_FALSE=''
USE_VALGRIND_TESTS_TRUE='#'
USE_ZLIB_DIR_FALSE='#'
USE_ZLIB_DIR_TRUE=''
VERSION='4.0.1'
WHATIS='whatis'
ZLIBDIR='/usr'
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-pc-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='/usr/share'
datarootdir='${prefix}/share'
docdir='/usr/share/doc/netcdf-4.0.1'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias='x86_64-pc-linux-gnu'
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='/usr/share/info'
install_sh='$(SHELL) /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/install-sh'
libdir='/usr/lib64'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='/var/lib'
lt_ECHO='echo'
mandir='/usr/share/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
prog=''
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "netCDF"
#define PACKAGE_TARNAME "netcdf"
#define PACKAGE_VERSION "4.0.1"
#define PACKAGE_STRING "netCDF 4.0.1"
#define PACKAGE_BUGREPORT "[e-mail]"
#define PACKAGE_URL ""
#define PACKAGE "netcdf"
#define VERSION "4.0.1"
#define NCIO_MINBLOCKSIZE 256
#define USE_NETCDF4 1
#define H5_USE_16_API 1
#define CHUNK_CACHE_SIZE 32000000
#define CHUNK_CACHE_NELEMS 1000
#define CHUNK_CACHE_PREEMPTION 0.75
#define USE_RENAMEV3 1
#define USE_EXTREME_NUMBERS 1
#define TEMP_LARGE "."
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define pgiFortran 1
#define NF_INT1_T byte
#define NF_INT2_T integer*2
#define NF_INT1_IS_C_SIGNED_CHAR 1
#define NF_INT2_IS_C_SHORT 1
#define NF_INT_IS_C_INT 1
#define NF_REAL_IS_C_FLOAT 1
#define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
#define NCBYTE_T byte
#define NCSHORT_T integer*2
#define HAVE_LOCALE_H 1
#define HAVE__BOOL 1
#define HAVE_STDBOOL_H 1
#define HAVE_STRERROR 1
#define HAVE_SNPRINTF 1
#define HAVE_ALLOCA_H 1
#define HAVE_ALLOCA 1
#define HAVE_DECL_ISNAN 1
#define HAVE_DECL_ISINF 1
#define HAVE_DECL_ISFINITE 1
#define HAVE_DECL_SIGNBIT 1
#define HAVE_LONG_LONG_INT 1
#define HAVE_UNSIGNED_LONG_LONG_INT 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_ST_BLKSIZE 1
#define HAVE_SSIZE_T 1
#define HAVE_PTRDIFF_T 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_LONG 8
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_OFF_T 8
#define SIZEOF_SIZE_T 8
#define HAVE_LIBHDF5 1

configure: exit 1