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Gentoo's Bugzilla – Attachment 213119 Details for
Bug 297070
sci-biology/meme fails parallel tests
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Build log
meme-4.3.0:20091215-173742.log (text/plain), 246.38 KB, created by
Diego Elio Pettenò (RETIRED)
on 2009-12-15 18:07:19 UTC
(
hide
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Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2009-12-15 18:07:19 UTC
Size:
246.38 KB
patch
obsolete
> [32;01m*[0m CPV: sci-biology/meme-4.3.0 > [32;01m*[0m REPO: gentoo > [32;01m*[0m USE: elibc_glibc kernel_linux test userland_GNU x86 >>>> Unpacking source... >>>> Unpacking meme_4.3.0.tar.gz to /var/tmp/portage/sci-biology/meme-4.3.0/work >>>> Source unpacked in /var/tmp/portage/sci-biology/meme-4.3.0/work >>>> Preparing source in /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ... > [32;01m*[0m Applying meme-4.0.0-Makefile.am.patch ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' ... > [32;01m*[0m Running aclocal ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running libtoolize --copy --force --install --automake ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy ... >[A[72C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: meme_4.3.0/config > [32;01m*[0m Applying portage-2.2.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-2.2.6.patch ... > [32;01m*[0m Running elibtoolize in: meme_4.3.0/src/libxml2 > [32;01m*[0m Applying portage-1.5.10.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-1.5.patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ... > * econf: updating meme_4.3.0/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating meme_4.3.0/config/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --prefix=/opt/meme --sysconfdir=/opt/meme/etc --with-logs=/var/log/meme --enable-serial >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for style of include used by make... GNU >checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for i686-pc-linux-gnu-objdump... i686-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar >checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking whether make sets $(MAKE)... (cached) yes >checking for ld... /usr/i686-pc-linux-gnu/bin/ld >checking for sed... (cached) /bin/sed >checking for mpicc... /usr/bin/mpicc >checking for mail... /usr/bin/mail >checking for sendmail... /usr/sbin/sendmail >checking for perl... /usr/bin/perl >checking for python... /usr/bin/python >checking for convert... /usr/bin/convert >checking for dot... /usr/bin/dot >checking for xml2-config... /usr/bin/xml2-config >checking for xslt-config... /usr/bin/xslt-config >checking for ant... /usr/bin/ant >checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes >checking for ANSI C header files... (cached) yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking sys/socket.h usability... yes >checking sys/socket.h presence... yes >checking for sys/socket.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking for an ANSI C-conforming const... yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for pid_t... yes >checking for size_t... yes >checking vfork.h usability... no >checking vfork.h presence... no >checking for vfork.h... no >checking for fork... yes >checking for vfork... yes >checking for working fork... yes >checking for working vfork... (cached) yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking return type of signal handlers... void >checking whether lstat correctly handles trailing slash... yes >checking whether stat accepts an empty string... no >checking for floor... yes >checking for getcwd... yes >checking for gethostbyname... yes >checking for isascii... yes >checking for memset... yes >checking for pow... yes >checking for rint... yes >checking for socket... yes >checking for sqrt... yes >checking for strchr... yes >checking for strcspn... yes >checking for strdup... yes >checking for strspn... yes >checking for strstr... yes >checking for strlcpy... no >checking for MPI_Comm_rank in -lmpi... no >checking whether to enable OpenMP multithreading support... no >checking for convert... (cached) /usr/bin/convert >checking for dot... (cached) /usr/bin/dot >configure: creating ./config.status >config.status: creating Makefile >config.status: creating doc/Makefile >config.status: creating doc/examples/Makefile >config.status: creating doc/examples/fimo_example_output_files/Makefile >config.status: creating doc/examples/glam2_example_output_files/Makefile >config.status: creating doc/examples/glam2scan_example_output_files/Makefile >config.status: creating doc/examples/mast_example_output_files/Makefile >config.status: creating doc/examples/meme_example_output_files/Makefile >config.status: creating doc/examples/tomtom_example_output_files/Makefile >config.status: creating doc/images/Makefile >config.status: creating etc/Makefile >config.status: creating src/filters/Makefile >config.status: creating src/filters/purge/Makefile >config.status: creating src/filters/dust/Makefile >config.status: creating scripts/Makefile >config.status: creating src/Makefile >config.status: creating src/libxml2/Makefile >config.status: creating src/libxml2/include/Makefile >config.status: creating src/libxml2/include/libxml/Makefile >config.status: creating src/libxslt/Makefile >config.status: creating src/parallel/Makefile >config.status: creating tests/Makefile >config.status: creating tests/common/Makefile >config.status: creating tests/mast/Makefile >config.status: creating tests/meme/Makefile >config.status: creating tests/clustalw2fasta/Makefile >config.status: creating tests/draw-mhmm/Makefile >config.status: creating tests/mhmm/Makefile >config.status: creating tests/mhmms/Makefile >config.status: creating tests/motiph/Makefile >config.status: creating tests/gomo/Makefile >config.status: creating tests/tomtom/Makefile >config.status: creating tests/scaffold/Makefile >config.status: creating tests/qvalue/Makefile >config.status: creating tests/web/Makefile >config.status: creating website/Makefile >config.status: creating website/cgi-bin/Makefile >config.status: creating website/html/Makefile >config.status: creating website/scripts/Makefile >config.status: creating website/images/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands > > ======================== > Configuration parameters > ======================== > > Install path: /opt/meme > Install UID: > Version: 4.3.0 > C compiler: i686-pc-linux-gnu-gcc > C compiler flags: -DUNIX -D__USE_FIXED_PROTOTYPES__ -O > Linker: /usr/i686-pc-linux-gnu/bin/ld > Special Libs: -lm > MPICC /usr/bin/mpicc > MPIINC -DMPI -I/usr/include > MPILIBDIR /usr/lib > MPIFLAGS -DPARALLEL > MPIRUN > OpenMP Support: no > MEME URL: http://tinderbox/meme > MEME WEB DIRECTORY: ${prefix}/web > MEME CONTACT: @tinderbox > MEME_LOGS: /var/log/meme > BLOCKMAKER URL: http://blocks.fhcrc.org/blocks-bin/process_blocks.pl > GO-SERVER URL: http://amigo.geneontology.org/cgi-bin/amigo/ > PERL: /usr/bin/perl > CONVERT: /usr/bin/convert > DOT: /usr/bin/dot > BUILD LIBXML2: no > LIBXML2 compiler flags: -I/usr/include/libxml2 > LIBXML2 libs: -lxml2 -lz -lm > BUILD LIBXSLT: no > LIBXSLT compiler flags: -I/usr/include/libxml2 > LIBXSLT libs: -L/usr/lib -lxslt -lxml2 -lz -lm > MEME_DB: ${prefix}/db > MEME_LOGS: /var/log/meme > OPAL URL: no > OPAL XML: no > > Run the following commands to compile, test and install meme: > make > make test > make install > >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ... >make -j14 >make all-recursive >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >Making all in src >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >echo '#define MEME_DIR "/opt/meme"' >dir.h; \ > echo '#define ETC_DIR "/opt/meme/etc" ' >> dir.h >make all-recursive >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >Making all in filters >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >Making all in purge >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT afnio.o -MD -MP -MF .deps/afnio.Tpo -c -o afnio.o afnio.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT alphabet.o -MD -MP -MF .deps/alphabet.Tpo -c -o alphabet.o alphabet.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT block.o -MD -MP -MF .deps/block.Tpo -c -o block.o block.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT dheap.o -MD -MP -MF .deps/dheap.Tpo -c -o dheap.o dheap.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gblast.o -MD -MP -MF .deps/gblast.Tpo -c -o gblast.o gblast.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT karlin.o -MD -MP -MF .deps/karlin.Tpo -c -o karlin.o karlin.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mheap.o -MD -MP -MF .deps/mheap.Tpo -c -o mheap.o mheap.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mlist.o -MD -MP -MF .deps/mlist.Tpo -c -o mlist.o mlist.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pairaln.o -MD -MP -MF .deps/pairaln.Tpo -c -o pairaln.o pairaln.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pmain.o -MD -MP -MF .deps/pmain.Tpo -c -o pmain.o pmain.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT purge.o -MD -MP -MF .deps/purge.Tpo -c -o purge.o purge.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT random.o -MD -MP -MF .deps/random.Tpo -c -o random.o random.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT seqset.o -MD -MP -MF .deps/seqset.Tpo -c -o seqset.o seqset.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT sequence.o -MD -MP -MF .deps/sequence.Tpo -c -o sequence.o sequence.c >mv -f .deps/random.Tpo .deps/random.Po >mv -f .deps/mlist.Tpo .deps/mlist.Po >mv -f .deps/afnio.Tpo .deps/afnio.Po >mv -f .deps/mheap.Tpo .deps/mheap.Po >mv -f .deps/dheap.Tpo .deps/dheap.Po >mv -f .deps/pmain.Tpo .deps/pmain.Po >mv -f .deps/karlin.Tpo .deps/karlin.Po >mv -f .deps/alphabet.Tpo .deps/alphabet.Po >mv -f .deps/purge.Tpo .deps/purge.Po >mv -f .deps/pairaln.Tpo .deps/pairaln.Po >mv -f .deps/gblast.Tpo .deps/gblast.Po >mv -f .deps/block.Tpo .deps/block.Po >mv -f .deps/seqset.Tpo .deps/seqset.Po >mv -f .deps/sequence.Tpo .deps/sequence.Po >/bin/sh ../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' >Making all in dust >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tust.o -MD -MP -MF .deps/tust.Tpo -c -o tust.o tust.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT dust.o -MD -MP -MF .deps/dust.Tpo -c -o dust.o dust.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT getfa.o -MD -MP -MF .deps/getfa.Tpo -c -o getfa.o getfa.c >mv -f .deps/tust.Tpo .deps/tust.Po >mv -f .deps/dust.Tpo .deps/dust.Po >mv -f .deps/getfa.Tpo .deps/getfa.Po >/bin/sh ../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o dust tust.o dust.o getfa.o -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o dust tust.o dust.o getfa.o -lm >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >make[5]: Nothing to be done for `all-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >Making all in libxml2 >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[5]: Nothing to be done for `all-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >Making all in libxslt >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' >Making all in . >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c -o liblogo_la-ceqlogo.lo `test -f 'ceqlogo.c' || echo './'`ceqlogo.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c -o libcommon_la-array.lo `test -f 'array.c' || echo './'`array.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c -o libcommon_la-background.lo `test -f 'background.c' || echo './'`background.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c -o libcommon_la-hash_table.lo `test -f 'hash_table.c' || 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>/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c -o libcommon_la-xml-util.lo `test -f 'xml-util.c' || echo './'`xml-util.c >mv -f .deps/libcommon_la-io.Tpo .deps/libcommon_la-io.Plo >mv -f .deps/libcommon_la-read_csv.Tpo .deps/libcommon_la-read_csv.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c -o libcommon_la-zscore.lo `test -f 'zscore.c' || echo './'`zscore.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF 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.libs/libcommon_la-xml-util.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c ama_scan.c -fPIC -DPIC -o .libs/libmetameme_la-ama_scan.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c alignment.c -fPIC -DPIC -o .libs/libmetameme_la-alignment.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c alphabet.c -fPIC -DPIC -o .libs/libmetameme_la-alphabet.o >mv -f .deps/libcommon_la-psp.Tpo .deps/libcommon_la-psp.Plo >ceqlogo.c: In function âCL_create2â: >ceqlogo.c:188: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >ceqlogo.c: In function âF_rmdirâ: >ceqlogo.c:1068: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >ceqlogo.c: In function âF_mkdirâ: >ceqlogo.c:1076: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c ceqlogo.c -o liblogo_la-ceqlogo.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c -o libmetameme_la-beadstring-xml.lo `test -f 'beadstring-xml.c' || echo './'`beadstring-xml.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c zscore.c -o libcommon_la-zscore.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c array-list.c -fPIC -DPIC -o .libs/libmetameme_la-array-list.o >mv -f .deps/libcommon_la-background.Tpo .deps/libcommon_la-background.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c -o libmetameme_la-binary-search.lo `test -f 'binary-search.c' || echo './'`binary-search.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c read_tamo.c -o libcommon_la-read_tamo.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c binary-search.c -fPIC -DPIC -o .libs/libmetameme_la-binary-search.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c beadstring-xml.c -fPIC -DPIC -o .libs/libmetameme_la-beadstring-xml.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c binary-search.c -o libmetameme_la-binary-search.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -o libcommon_la-xml-util.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c ama_scan.c -o libmetameme_la-ama_scan.o >/dev/null 2>&1 >utils.c: In function âopen_command_pipeâ: >utils.c:255: warning: format not a string literal and no format arguments >utils.c: In function âdate_and_timeâ: >utils.c:676: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1 >mv -f .deps/libcommon_la-array.Tpo .deps/libcommon_la-array.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c -o libmetameme_la-build-hmm.lo `test -f 'build-hmm.c' || echo './'`build-hmm.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c alphabet.c -o libmetameme_la-alphabet.o >/dev/null 2>&1 >mv -f .deps/libcommon_la-zscore.Tpo .deps/libcommon_la-zscore.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c -o libmetameme_la-cisml.lo `test -f 'cisml.c' || echo './'`cisml.c >mv -f .deps/libmetameme_la-binary-search.Tpo .deps/libmetameme_la-binary-search.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c array-list.c -o libmetameme_la-array-list.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c -o libmetameme_la-clustalw-io.lo `test -f 'clustalw-io.c' || echo './'`clustalw-io.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c build-hmm.c -fPIC -DPIC -o .libs/libmetameme_la-build-hmm.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c beadstring-xml.c -o libmetameme_la-beadstring-xml.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c alignment.c -o libmetameme_la-alignment.o >/dev/null 2>&1 >mv -f .deps/libcommon_la-meme-io.Tpo .deps/libcommon_la-meme-io.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c -o libmetameme_la-dp.lo `test -f 'dp.c' || echo './'`dp.c >mv -f .deps/libcommon_la-matrix.Tpo .deps/libcommon_la-matrix.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c cisml.c -fPIC -DPIC -o .libs/libmetameme_la-cisml.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c clustalw-io.c -fPIC -DPIC -o .libs/libmetameme_la-clustalw-io.o >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c -o libmetameme_la-evomodel.lo `test -f 'evomodel.c' || echo './'`evomodel.c >mv -f .deps/libcommon_la-read_tamo.Tpo .deps/libcommon_la-read_tamo.Plo >mv -f .deps/libcommon_la-xml-util.Tpo .deps/libcommon_la-xml-util.Plo >mv -f .deps/libmetameme_la-ama_scan.Tpo .deps/libmetameme_la-ama_scan.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c -o libmetameme_la-evomodel_with_loss.lo `test -f 'evomodel_with_loss.c' || echo './'`evomodel_with_loss.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c -o libmetameme_la-fasta-io.lo `test -f 'fasta-io.c' || echo './'`fasta-io.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c -o libmetameme_la-fitevd.lo `test -f 'fitevd.c' || echo './'`fitevd.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c dp.c -fPIC -DPIC -o .libs/libmetameme_la-dp.o >mv -f .deps/libmetameme_la-alphabet.Tpo .deps/libmetameme_la-alphabet.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c evomodel.c -fPIC -DPIC -o .libs/libmetameme_la-evomodel.o >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c -o libmetameme_la-gendb.lo `test -f 'gendb.c' || echo './'`gendb.c >mv -f .deps/libcommon_la-utils.Tpo .deps/libcommon_la-utils.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c fasta-io.c -fPIC -DPIC -o .libs/libmetameme_la-fasta-io.o >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c -o libmetameme_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c evomodel_with_loss.c -fPIC -DPIC -o .libs/libmetameme_la-evomodel_with_loss.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c fitevd.c -fPIC -DPIC -o .libs/libmetameme_la-fitevd.o >mv -f .deps/libmetameme_la-array-list.Tpo .deps/libmetameme_la-array-list.Plo >mv -f .deps/libmetameme_la-beadstring-xml.Tpo .deps/libmetameme_la-beadstring-xml.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c -o libmetameme_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c -o libmetameme_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c gendb.c -fPIC -DPIC -o .libs/libmetameme_la-gendb.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c karlin.c -fPIC -DPIC -o .libs/libmetameme_la-karlin.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c clustalw-io.c -o libmetameme_la-clustalw-io.o >/dev/null 2>&1 >mv -f .deps/liblogo_la-ceqlogo.Tpo .deps/liblogo_la-ceqlogo.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c -o libmetameme_la-match.lo `test -f 'match.c' || echo './'`match.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c linked-list.c -fPIC -DPIC -o .libs/libmetameme_la-linked-list.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c build-hmm.c -o libmetameme_la-build-hmm.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c log-hmm.c -fPIC -DPIC -o .libs/libmetameme_la-log-hmm.o >mv -f .deps/libmetameme_la-alignment.Tpo .deps/libmetameme_la-alignment.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c -o libmetameme_la-merger.lo `test -f 'merger.c' || echo './'`merger.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c fasta-io.c -o libmetameme_la-fasta-io.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c dp.c -o libmetameme_la-dp.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c 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-I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c linked-list.c -o libmetameme_la-linked-list.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c evomodel.c -o libmetameme_la-evomodel.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c log-hmm.c -o libmetameme_la-log-hmm.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c match.c -o libmetameme_la-match.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c gendb.c -o libmetameme_la-gendb.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-clustalw-io.Tpo .deps/libmetameme_la-clustalw-io.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c -o libmetameme_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c merger.c -o libmetameme_la-merger.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-evomodel_with_loss.Tpo .deps/libmetameme_la-evomodel_with_loss.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c fitevd.c -o libmetameme_la-fitevd.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-karlin.Tpo .deps/libmetameme_la-karlin.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c -o libmetameme_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c metameme.c -fPIC -DPIC -o .libs/libmetameme_la-metameme.o >mv -f .deps/libmetameme_la-fasta-io.Tpo .deps/libmetameme_la-fasta-io.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c -o libmetameme_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c -o libmetameme_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c >mv -f .deps/libmetameme_la-build-hmm.Tpo .deps/libmetameme_la-build-hmm.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c -o libmetameme_la-motiph-scoring.lo `test -f 'motiph-scoring.c' || echo './'`motiph-scoring.c >mv -f .deps/libmetameme_la-linked-list.Tpo .deps/libmetameme_la-linked-list.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c -o libmetameme_la-object-list.lo `test -f 'object-list.c' || echo './'`object-list.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-mhmm.o >mv -f .deps/libmetameme_la-dp.Tpo .deps/libmetameme_la-dp.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c -o libmetameme_la-order.lo `test -f 'order.c' || echo './'`order.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c mhmm-state.c -fPIC -DPIC -o .libs/libmetameme_la-mhmm-state.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c mhmms.c -fPIC -DPIC -o .libs/libmetameme_la-mhmms.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c motiph-scoring.c -fPIC -DPIC -o .libs/libmetameme_la-motiph-scoring.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c object-list.c -fPIC -DPIC -o .libs/libmetameme_la-object-list.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c metameme.c -o libmetameme_la-metameme.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-match.Tpo .deps/libmetameme_la-match.Plo >mv -f .deps/libmetameme_la-log-hmm.Tpo .deps/libmetameme_la-log-hmm.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c -o libmetameme_la-params.lo `test -f 'params.c' || echo './'`params.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c order.c -fPIC -DPIC -o .libs/libmetameme_la-order.o >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c -o libmetameme_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c >mv -f .deps/libmetameme_la-merger.Tpo .deps/libmetameme_la-merger.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c -o libmetameme_la-qsort.lo `test -f 'qsort.c' || echo './'`qsort.c >mv -f .deps/libmetameme_la-gendb.Tpo .deps/libmetameme_la-gendb.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c params.c -fPIC -DPIC -o .libs/libmetameme_la-params.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c pssm.c -fPIC -DPIC -o .libs/libmetameme_la-pssm.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c cisml.c -o libmetameme_la-cisml.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c -o libmetameme_la-qvalue.lo `test -f 'qvalue.c' || echo './'`qvalue.c >mv -f .deps/libmetameme_la-evomodel.Tpo .deps/libmetameme_la-evomodel.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c -o libmetameme_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c qsort.c -fPIC -DPIC -o .libs/libmetameme_la-qsort.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c mhmm-state.c -o libmetameme_la-mhmm-state.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-metameme.Tpo .deps/libmetameme_la-metameme.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c qvalue.c -fPIC -DPIC -o .libs/libmetameme_la-qvalue.o >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c -o libmetameme_la-read-mhmm.lo `test -f 'read-mhmm.c' || echo './'`read-mhmm.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c mhmm.c -o libmetameme_la-mhmm.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c ranksum_test.c -fPIC -DPIC -o .libs/libmetameme_la-ranksum_test.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c params.c -o libmetameme_la-params.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c qsort.c -o libmetameme_la-qsort.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c object-list.c -o libmetameme_la-object-list.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c order.c -o libmetameme_la-order.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c read-mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-read-mhmm.o >mv -f .deps/libmetameme_la-fitevd.Tpo .deps/libmetameme_la-fitevd.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c -o libmetameme_la-red-black-tree.lo `test -f 'red-black-tree.c' || echo './'`red-black-tree.c >mv -f .deps/libmetameme_la-mhmm-state.Tpo .deps/libmetameme_la-mhmm-state.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c mhmms.c -o libmetameme_la-mhmms.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c -o libmetameme_la-scored-sites.lo `test -f 'scored-sites.c' || echo './'`scored-sites.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c qvalue.c -o libmetameme_la-qvalue.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c red-black-tree.c -fPIC -DPIC -o .libs/libmetameme_la-red-black-tree.o >mv -f .deps/libmetameme_la-qsort.Tpo .deps/libmetameme_la-qsort.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c -o libmetameme_la-seq.lo `test -f 'seq.c' || echo './'`seq.c >mv -f .deps/libmetameme_la-params.Tpo .deps/libmetameme_la-params.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c motiph-scoring.c -o libmetameme_la-motiph-scoring.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-object-list.Tpo .deps/libmetameme_la-object-list.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c -o libmetameme_la-simple-getopt.lo `test -f 'simple-getopt.c' || echo './'`simple-getopt.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c -o libmetameme_la-string-list.lo `test -f 'string-list.c' || echo './'`string-list.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c ranksum_test.c -o libmetameme_la-ranksum_test.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c seq.c -fPIC -DPIC -o .libs/libmetameme_la-seq.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c scored-sites.c -fPIC -DPIC -o .libs/libmetameme_la-scored-sites.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c pssm.c -o libmetameme_la-pssm.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-order.Tpo .deps/libmetameme_la-order.Plo >mv -f .deps/libmetameme_la-mhmm.Tpo .deps/libmetameme_la-mhmm.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c simple-getopt.c -fPIC -DPIC -o .libs/libmetameme_la-simple-getopt.o >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c -o libmetameme_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c -o libmetameme_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c string-list.c -fPIC -DPIC -o .libs/libmetameme_la-string-list.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c substmatrix-table.c -fPIC -DPIC -o .libs/libmetameme_la-substmatrix-table.o >read-mhmm.c: In function âread_mhmm_stateâ: >read-mhmm.c:75: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >read-mhmm.c: In function âread_mhmmâ: >read-mhmm.c:743: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >mv -f .deps/libmetameme_la-qvalue.Tpo .deps/libmetameme_la-qvalue.Plo >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c read-mhmm.c -o libmetameme_la-read-mhmm.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c -o libmetameme_la-tomtom.lo `test -f 'tomtom.c' || echo './'`tomtom.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c subst-matrix.c -fPIC -DPIC -o .libs/libmetameme_la-subst-matrix.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c simple-getopt.c -o libmetameme_la-simple-getopt.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-ranksum_test.Tpo .deps/libmetameme_la-ranksum_test.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c -o libmetameme_la-tree.lo `test -f 'tree.c' || echo './'`tree.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c seq.c -o libmetameme_la-seq.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c red-black-tree.c -o libmetameme_la-red-black-tree.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c scored-sites.c -o libmetameme_la-scored-sites.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c tomtom.c -fPIC -DPIC -o .libs/libmetameme_la-tomtom.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c substmatrix-table.c -o libmetameme_la-substmatrix-table.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c tree.c -fPIC -DPIC -o .libs/libmetameme_la-tree.o >mv -f .deps/libmetameme_la-motiph-scoring.Tpo .deps/libmetameme_la-motiph-scoring.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c -o libmetameme_la-utils.lo `test -f 'utils.c' || echo './'`utils.c >mv -f .deps/libmetameme_la-simple-getopt.Tpo .deps/libmetameme_la-simple-getopt.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c -o libmetameme_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c string-list.c -o libmetameme_la-string-list.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-pssm.Tpo .deps/libmetameme_la-pssm.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT alphtype.o -MD -MP -MF .deps/alphtype.Tpo -c -o alphtype.o alphtype.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c subst-matrix.c -o libmetameme_la-subst-matrix.o >/dev/null 2>&1 >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libmetameme_la-utils.o >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c write-mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-write-mhmm.o >mv -f .deps/libmetameme_la-read-mhmm.Tpo .deps/libmetameme_la-read-mhmm.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ama-ama.o -MD -MP -MF .deps/ama-ama.Tpo -c -o ama-ama.o `test -f 'ama.c' || echo './'`ama.c >mv -f .deps/libmetameme_la-mhmms.Tpo .deps/libmetameme_la-mhmms.Plo >mv -f .deps/libmetameme_la-cisml.Tpo .deps/libmetameme_la-cisml.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT beadstring-beadstring.o -MD -MP -MF .deps/beadstring-beadstring.Tpo -c -o beadstring-beadstring.o `test -f 'beadstring.c' || echo './'`beadstring.c >mv -f .deps/libmetameme_la-seq.Tpo .deps/libmetameme_la-seq.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ceqlogo-ceqlogo.o -MD -MP -MF .deps/ceqlogo-ceqlogo.Tpo -c -o ceqlogo-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c >mv -f .deps/libmetameme_la-red-black-tree.Tpo .deps/libmetameme_la-red-black-tree.Plo >mv -f .deps/libmetameme_la-scored-sites.Tpo .deps/libmetameme_la-scored-sites.Plo >mv -f .deps/libmetameme_la-substmatrix-table.Tpo .deps/libmetameme_la-substmatrix-table.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw_io-clustalw-io.o -MD -MP -MF .deps/clustalw_io-clustalw-io.Tpo -c -o clustalw_io-clustalw-io.o `test -f 'clustalw-io.c' || echo './'`clustalw-io.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw2fasta-clustalw2fasta.o -MD -MP -MF .deps/clustalw2fasta-clustalw2fasta.Tpo -c -o clustalw2fasta-clustalw2fasta.o `test -f 'clustalw2fasta.c' || echo './'`clustalw2fasta.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw2phylip-clustalw2phylip.o -MD -MP -MF .deps/clustalw2phylip-clustalw2phylip.Tpo -c -o clustalw2phylip-clustalw2phylip.o `test -f 'clustalw2phylip.c' || echo './'`clustalw2phylip.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT draw_mhmm-draw-mhmm.o -MD -MP -MF .deps/draw_mhmm-draw-mhmm.Tpo -c -o draw_mhmm-draw-mhmm.o `test -f 'draw-mhmm.c' || echo './'`draw-mhmm.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c tomtom.c -o libmetameme_la-tomtom.o >/dev/null 2>&1 >mv -f .deps/alphtype.Tpo .deps/alphtype.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fasta_io-fasta-io.o -MD -MP -MF .deps/fasta_io-fasta-io.Tpo -c -o fasta_io-fasta-io.o `test -f 'fasta-io.c' || echo './'`fasta-io.c >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c write-mhmm.c -o libmetameme_la-write-mhmm.o >/dev/null 2>&1 >mv -f .deps/libmetameme_la-subst-matrix.Tpo .deps/libmetameme_la-subst-matrix.Plo >tree.c: In function âread_nodeâ: >tree.c:509: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >tree.c:540: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >tree.c: In function âread_treeâ: >tree.c:571: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c tree.c -o libmetameme_la-tree.o >/dev/null 2>&1 >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fimo-fimo.o -MD -MP -MF .deps/fimo-fimo.Tpo -c -o fimo-fimo.o `test -f 'fimo.c' || echo './'`fimo.c >clustalw2fasta.c: In function âmainâ: >clustalw2fasta.c:106: warning: format not a string literal and no format arguments >mv -f .deps/clustalw2fasta-clustalw2fasta.Tpo .deps/clustalw2fasta-clustalw2fasta.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fitevd-fitevd.o -MD -MP -MF .deps/fitevd-fitevd.Tpo -c -o fitevd-fitevd.o `test -f 'fitevd.c' || echo './'`fitevd.c >mv -f .deps/ama-ama.Tpo .deps/ama-ama.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gendb-gendb.o -MD -MP -MF .deps/gendb-gendb.Tpo -c -o gendb-gendb.o `test -f 'gendb.c' || echo './'`gendb.c >draw-mhmm.c: In function âmainâ: >draw-mhmm.c:449: warning: format not a string literal and no format arguments >mv -f .deps/libmetameme_la-string-list.Tpo .deps/libmetameme_la-string-list.Plo >utils.c: In function âopen_command_pipeâ: >utils.c:255: warning: format not a string literal and no format arguments >utils.c: In function âdate_and_timeâ: >utils.c:676: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c utils.c -o libmetameme_la-utils.o >/dev/null 2>&1 >mv -f .deps/clustalw_io-clustalw-io.Tpo .deps/clustalw_io-clustalw-io.Po >fasta-io.c: In function âmainâ: >fasta-io.c:382: warning: format not a string literal and no format arguments >mv -f .deps/draw_mhmm-draw-mhmm.Tpo .deps/draw_mhmm-draw-mhmm.Po >mv -f .deps/fasta_io-fasta-io.Tpo .deps/fasta_io-fasta-io.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT getsize.o -MD -MP -MF .deps/getsize.Tpo -c -o getsize.o getsize.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_alphabet.o -MD -MP -MF .deps/glam2-glam2_alphabet.Tpo -c -o glam2-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_args.o -MD -MP -MF .deps/glam2-glam2_args.Tpo -c -o glam2-glam2_args.o `test -f 'glam2_args.c' || echo './'`glam2_args.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_column_sample.o -MD -MP -MF .deps/glam2-glam2_column_sample.Tpo -c -o glam2-glam2_column_sample.o `test -f 'glam2_column_sample.c' || echo './'`glam2_column_sample.c >mv -f .deps/libmetameme_la-tomtom.Tpo .deps/libmetameme_la-tomtom.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_dirichlet.o -MD -MP -MF .deps/glam2-glam2_dirichlet.Tpo -c -o glam2-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c >beadstring.c: In function âprocess_command_lineâ: >beadstring.c:1091: warning: format not a string literal and no format arguments >beadstring.c:1102: warning: format not a string literal and no format arguments >mv -f .deps/beadstring-beadstring.Tpo .deps/beadstring-beadstring.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_dna_prior.o -MD -MP -MF .deps/glam2-glam2_dna_prior.Tpo -c -o glam2-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c >mv -f .deps/libmetameme_la-write-mhmm.Tpo .deps/libmetameme_la-write-mhmm.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_fasta.o -MD -MP -MF .deps/glam2-glam2_fasta.Tpo -c -o glam2-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c >mv -f .deps/libmetameme_la-tree.Tpo .deps/libmetameme_la-tree.Plo >glam2_alphabet.c: In function âalphabet_readâ: >glam2_alphabet.c:66: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >glam2_alphabet.c:77: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >mv -f .deps/clustalw2phylip-clustalw2phylip.Tpo .deps/clustalw2phylip-clustalw2phylip.Po >mv -f .deps/glam2-glam2_alphabet.Tpo .deps/glam2-glam2_alphabet.Po >mv -f .deps/glam2-glam2_args.Tpo .deps/glam2-glam2_args.Po >mv -f .deps/glam2-glam2_dna_prior.Tpo .deps/glam2-glam2_dna_prior.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_glam2.o -MD -MP -MF .deps/glam2-glam2_glam2.Tpo -c -o glam2-glam2_glam2.o `test -f 'glam2_glam2.c' || echo './'`glam2_glam2.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_glam2_aln.o -MD -MP -MF .deps/glam2-glam2_glam2_aln.Tpo -c -o glam2-glam2_glam2_aln.o `test -f 'glam2_glam2_aln.c' || echo './'`glam2_glam2_aln.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_init.o -MD -MP -MF .deps/glam2-glam2_init.Tpo -c -o glam2-glam2_init.o `test -f 'glam2_init.c' || echo './'`glam2_init.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_output.o -MD -MP -MF .deps/glam2-glam2_output.Tpo -c -o glam2-glam2_output.o `test -f 'glam2_output.c' || echo './'`glam2_output.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2-glam2_recode3_20comp.Tpo -c -o glam2-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c >ceqlogo.c: In function âCL_create2â: >ceqlogo.c:188: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >ceqlogo.c: In function âF_rmdirâ: >ceqlogo.c:1068: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >ceqlogo.c: In function âF_mkdirâ: >ceqlogo.c:1076: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >mv -f .deps/ceqlogo-ceqlogo.Tpo .deps/ceqlogo-ceqlogo.Po >fimo.c: In function âprocess_command_lineâ: >fimo.c:281: warning: format not a string literal and no format arguments >mv -f .deps/fimo-fimo.Tpo .deps/fimo-fimo.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_site_sample.o -MD -MP -MF .deps/glam2-glam2_site_sample.Tpo -c -o glam2-glam2_site_sample.o `test -f 'glam2_site_sample.c' || echo './'`glam2_site_sample.c >mv -f .deps/libmetameme_la-utils.Tpo .deps/libmetameme_la-utils.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_util.o -MD -MP -MF .deps/glam2-glam2_util.Tpo -c -o glam2-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-utils.o -MD -MP -MF .deps/glam2-utils.Tpo -c -o glam2-utils.o `test -f 'utils.c' || echo './'`utils.c >glam2_dirichlet.c: In function âdmix_readâ: >glam2_dirichlet.c:282: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >mv -f .deps/glam2-glam2_dirichlet.Tpo .deps/glam2-glam2_dirichlet.Po >gendb.c: In function âmainâ: >gendb.c:419: warning: format not a string literal and no format arguments >mv -f .deps/gendb-gendb.Tpo .deps/gendb-gendb.Po >mv -f .deps/getsize.Tpo .deps/getsize.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-matrix.o -MD -MP -MF .deps/glam2-matrix.Tpo -c -o glam2-matrix.o `test -f 'matrix.c' || echo './'`matrix.c >mv -f .deps/glam2-glam2_column_sample.Tpo .deps/glam2-glam2_column_sample.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-array.o -MD -MP -MF .deps/glam2-array.Tpo -c -o glam2-array.o `test -f 'array.c' || echo './'`array.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-io.o -MD -MP -MF .deps/glam2-io.Tpo -c -o glam2-io.o `test -f 'io.c' || echo './'`io.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-ceqlogo.o -MD -MP -MF .deps/glam2-ceqlogo.Tpo -c -o glam2-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c >mv -f .deps/glam2-glam2_recode3_20comp.Tpo .deps/glam2-glam2_recode3_20comp.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_glam2format.o -MD -MP -MF .deps/glam2format-glam2_glam2format.Tpo -c -o glam2format-glam2_glam2format.o `test -f 'glam2_glam2format.c' || echo './'`glam2_glam2format.c >mv -f .deps/glam2-glam2_fasta.Tpo .deps/glam2-glam2_fasta.Po >glam2_glam2.c: In function âmainâ: >glam2_glam2.c:196: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >glam2_glam2.c:199: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >mv -f .deps/glam2-glam2_glam2.Tpo .deps/glam2-glam2_glam2.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_alignment.o -MD -MP -MF .deps/glam2format-glam2_alignment.Tpo -c -o glam2format-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_fasta.o -MD -MP -MF .deps/glam2format-glam2_fasta.Tpo -c -o glam2format-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c >mv -f .deps/glam2-glam2_glam2_aln.Tpo .deps/glam2-glam2_glam2_aln.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_util.o -MD -MP -MF .deps/glam2format-glam2_util.Tpo -c -o glam2format-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c >mv -f .deps/glam2-glam2_init.Tpo .deps/glam2-glam2_init.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_glam2mask.o -MD -MP -MF .deps/glam2_glam2mask.Tpo -c -o glam2_glam2mask.o glam2_glam2mask.c >mv -f .deps/glam2-io.Tpo .deps/glam2-io.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_alignment.o -MD -MP -MF .deps/glam2_alignment.Tpo -c -o glam2_alignment.o glam2_alignment.c >mv -f .deps/glam2-glam2_output.Tpo .deps/glam2-glam2_output.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_fasta.o -MD -MP -MF .deps/glam2_fasta.Tpo -c -o glam2_fasta.o glam2_fasta.c >mv -f .deps/glam2format-glam2_alignment.Tpo .deps/glam2format-glam2_alignment.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_util.o -MD -MP -MF .deps/glam2_util.Tpo -c -o glam2_util.o glam2_util.c >mv -f .deps/fitevd-fitevd.Tpo .deps/fitevd-fitevd.Po >mv -f .deps/glam2-glam2_util.Tpo .deps/glam2-glam2_util.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_alignment.o -MD -MP -MF .deps/glam2scan-glam2_alignment.Tpo -c -o glam2scan-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c >mv -f .deps/glam2-glam2_site_sample.Tpo .deps/glam2-glam2_site_sample.Po >mv -f .deps/glam2format-glam2_fasta.Tpo .deps/glam2format-glam2_fasta.Po >mv -f .deps/glam2format-glam2_glam2format.Tpo .deps/glam2format-glam2_glam2format.Po >mv -f .deps/glam2_alignment.Tpo .deps/glam2_alignment.Po >utils.c: In function âopen_command_pipeâ: >utils.c:255: warning: format not a string literal and no format arguments >utils.c: In function âdate_and_timeâ: >utils.c:676: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >mv -f .deps/glam2-utils.Tpo .deps/glam2-utils.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_alphabet.o -MD -MP -MF .deps/glam2scan-glam2_alphabet.Tpo -c -o glam2scan-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c >mv -f .deps/glam2_glam2mask.Tpo .deps/glam2_glam2mask.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_dna_prior.o -MD -MP -MF .deps/glam2scan-glam2_dna_prior.Tpo -c -o glam2scan-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_fasta.o -MD -MP -MF .deps/glam2scan-glam2_fasta.Tpo -c -o glam2scan-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c >mv -f .deps/glam2-array.Tpo .deps/glam2-array.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_dirichlet.o -MD -MP -MF .deps/glam2scan-glam2_dirichlet.Tpo -c -o glam2scan-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_heap.o -MD -MP -MF .deps/glam2scan-glam2_heap.Tpo -c -o glam2scan-glam2_heap.o `test -f 'glam2_heap.c' || echo './'`glam2_heap.c >mv -f .deps/glam2_fasta.Tpo .deps/glam2_fasta.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_motif.o -MD -MP -MF .deps/glam2scan-glam2_motif.Tpo -c -o glam2scan-glam2_motif.o `test -f 'glam2_motif.c' || echo './'`glam2_motif.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan.o -MD -MP -MF .deps/glam2scan-glam2_scan.Tpo -c -o glam2scan-glam2_scan.o `test -f 'glam2_scan.c' || echo './'`glam2_scan.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_args.o -MD -MP -MF .deps/glam2scan-glam2_scan_args.Tpo -c -o glam2scan-glam2_scan_args.o `test -f 'glam2_scan_args.c' || echo './'`glam2_scan_args.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_init.o -MD -MP -MF .deps/glam2scan-glam2_scan_init.Tpo -c -o glam2scan-glam2_scan_init.o `test -f 'glam2_scan_init.c' || echo './'`glam2_scan_init.c >mv -f .deps/glam2scan-glam2_dna_prior.Tpo .deps/glam2scan-glam2_dna_prior.Po >mv -f .deps/glam2scan-glam2_alignment.Tpo .deps/glam2scan-glam2_alignment.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_output.o -MD -MP -MF .deps/glam2scan-glam2_scan_output.Tpo -c -o glam2scan-glam2_scan_output.o `test -f 'glam2_scan_output.c' || echo './'`glam2_scan_output.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2scan-glam2_recode3_20comp.Tpo -c -o glam2scan-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c >glam2_alphabet.c: In function âalphabet_readâ: >glam2_alphabet.c:66: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >glam2_alphabet.c:77: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >mv -f .deps/glam2scan-glam2_alphabet.Tpo .deps/glam2scan-glam2_alphabet.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_util.o -MD -MP -MF .deps/glam2scan-glam2_util.Tpo -c -o glam2scan-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c >mv -f .deps/glam2format-glam2_util.Tpo .deps/glam2format-glam2_util.Po >mv -f .deps/glam2-matrix.Tpo .deps/glam2-matrix.Po >mv -f .deps/glam2scan-glam2_heap.Tpo .deps/glam2scan-glam2_heap.Po >mv -f .deps/glam2_util.Tpo .deps/glam2_util.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-utils.o -MD -MP -MF .deps/glam2scan-utils.Tpo -c -o glam2scan-utils.o `test -f 'utils.c' || echo './'`utils.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-array.o -MD -MP -MF .deps/glam2scan-array.Tpo -c -o glam2scan-array.o `test -f 'array.c' || echo './'`array.c >mv -f .deps/glam2scan-glam2_scan_args.Tpo .deps/glam2scan-glam2_scan_args.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gomo-gomo.o -MD -MP -MF .deps/gomo-gomo.Tpo -c -o gomo-gomo.o `test -f 'gomo.c' || echo './'`gomo.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT log_hmm-log-hmm.o -MD -MP -MF .deps/log_hmm-log-hmm.Tpo -c -o log_hmm-log-hmm.o `test -f 'log-hmm.c' || echo './'`log-hmm.c >mv -f .deps/glam2scan-glam2_motif.Tpo .deps/glam2scan-glam2_motif.Po >mv -f .deps/glam2scan-glam2_recode3_20comp.Tpo .deps/glam2scan-glam2_recode3_20comp.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT diagram.o -MD -MP -MF .deps/diagram.Tpo -c -o diagram.o diagram.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT logodds.o -MD -MP -MF .deps/logodds.Tpo -c -o logodds.o logodds.c >mv -f .deps/glam2scan-glam2_fasta.Tpo .deps/glam2scan-glam2_fasta.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mast.o -MD -MP -MF .deps/mast.Tpo -c -o mast.o mast.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mast-util.o -MD -MP -MF .deps/mast-util.Tpo -c -o mast-util.o mast-util.c >glam2_dirichlet.c: In function âdmix_readâ: >glam2_dirichlet.c:282: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >mv -f .deps/glam2scan-glam2_dirichlet.Tpo .deps/glam2scan-glam2_dirichlet.Po >mv -f .deps/glam2scan-glam2_scan_output.Tpo .deps/glam2scan-glam2_scan_output.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT motifs.o -MD -MP -MF .deps/motifs.Tpo -c -o motifs.o motifs.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pssm-distr.o -MD -MP -MF .deps/pssm-distr.Tpo -c -o pssm-distr.o pssm-distr.c >mv -f .deps/glam2scan-glam2_scan_init.Tpo .deps/glam2scan-glam2_scan_init.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT regress.o -MD -MP -MF .deps/regress.Tpo -c -o regress.o regress.c >mv -f .deps/glam2scan-glam2_scan.Tpo .deps/glam2scan-glam2_scan.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-alphabet.o -MD -MP -MF .deps/meme_bin-alphabet.Tpo -c -o meme_bin-alphabet.o `test -f 'alphabet.c' || echo './'`alphabet.c >ceqlogo.c: In function âCL_create2â: >ceqlogo.c:188: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >ceqlogo.c: In function âF_rmdirâ: >ceqlogo.c:1068: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >ceqlogo.c: In function âF_mkdirâ: >ceqlogo.c:1076: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >mv -f .deps/glam2-ceqlogo.Tpo .deps/glam2-ceqlogo.Po >mv -f .deps/motifs.Tpo .deps/motifs.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-array-list.o -MD -MP -MF .deps/meme_bin-array-list.Tpo -c -o meme_bin-array-list.o `test -f 'array-list.c' || echo './'`array-list.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-banner.o -MD -MP -MF .deps/meme_bin-banner.Tpo -c -o meme_bin-banner.o `test -f 'banner.c' || echo './'`banner.c >mv -f .deps/diagram.Tpo .deps/diagram.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-binary-search.o -MD -MP -MF .deps/meme_bin-binary-search.Tpo -c -o meme_bin-binary-search.o `test -f 'binary-search.c' || echo './'`binary-search.c >log-hmm.c: In function âmainâ: >log-hmm.c:354: warning: format not a string literal and no format arguments >mv -f .deps/glam2scan-glam2_util.Tpo .deps/glam2scan-glam2_util.Po >mv -f .deps/log_hmm-log-hmm.Tpo .deps/log_hmm-log-hmm.Po >mv -f .deps/pssm-distr.Tpo .deps/pssm-distr.Po >mv -f .deps/regress.Tpo .deps/regress.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-branching_search.o -MD -MP -MF .deps/meme_bin-branching_search.Tpo -c -o meme_bin-branching_search.o `test -f 'branching_search.c' || echo './'`branching_search.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-calculate_p_y.o -MD -MP -MF .deps/meme_bin-calculate_p_y.Tpo -c -o meme_bin-calculate_p_y.o `test -f 'calculate_p_y.c' || echo './'`calculate_p_y.c >utils.c: In function âopen_command_pipeâ: >utils.c:255: warning: format not a string literal and no format arguments >utils.c: In function âdate_and_timeâ: >utils.c:676: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >mv -f .deps/glam2scan-utils.Tpo .deps/glam2scan-utils.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-discretize.o -MD -MP -MF .deps/meme_bin-discretize.Tpo -c -o meme_bin-discretize.o `test -f 'discretize.c' || echo './'`discretize.c >mv -f .deps/logodds.Tpo .deps/logodds.Po >mv -f .deps/meme_bin-alphabet.Tpo .deps/meme_bin-alphabet.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-display.o -MD -MP -MF .deps/meme_bin-display.Tpo -c -o meme_bin-display.o `test -f 'display.c' || echo './'`display.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-dpalign.o -MD -MP -MF .deps/meme_bin-dpalign.Tpo -c -o meme_bin-dpalign.o `test -f 'dpalign.c' || echo './'`dpalign.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-em.o -MD -MP -MF .deps/meme_bin-em.Tpo -c -o meme_bin-em.o `test -f 'em.c' || echo './'`em.c >mv -f .deps/meme_bin-binary-search.Tpo .deps/meme_bin-binary-search.Po >mv -f .deps/glam2scan-array.Tpo .deps/glam2scan-array.Po >mv -f .deps/meme_bin-banner.Tpo .deps/meme_bin-banner.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-hash_table.o -MD -MP -MF .deps/meme_bin-hash_table.Tpo -c -o meme_bin-hash_table.o `test -f 'hash_table.c' || echo './'`hash_table.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-init.o -MD -MP -MF .deps/meme_bin-init.Tpo -c -o meme_bin-init.o `test -f 'init.c' || echo './'`init.c >mv -f .deps/meme_bin-array-list.Tpo .deps/meme_bin-array-list.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-justlike.o -MD -MP -MF .deps/meme_bin-justlike.Tpo -c -o meme_bin-justlike.o `test -f 'justlike.c' || echo './'`justlike.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-likelihood.o -MD -MP -MF .deps/meme_bin-likelihood.Tpo -c -o meme_bin-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-linked-list.o -MD -MP -MF .deps/meme_bin-linked-list.Tpo -c -o meme_bin-linked-list.o `test -f 'linked-list.c' || echo './'`linked-list.c >mv -f .deps/mast-util.Tpo .deps/mast-util.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-llr.o -MD -MP -MF .deps/meme_bin-llr.Tpo -c -o meme_bin-llr.o `test -f 'llr.c' || echo './'`llr.c >gomo.c: In function âstart_xml_outputâ: >gomo.c:583: warning: format not a string literal and no format arguments >gomo.c: In function âprocess_cmd_lineâ: >gomo.c:1573: warning: format not a string literal and no format arguments >mv -f .deps/gomo-gomo.Tpo .deps/gomo-gomo.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-logodds.o -MD -MP -MF .deps/meme_bin-logodds.Tpo -c -o meme_bin-logodds.o `test -f 'logodds.c' || echo './'`logodds.c >mv -f .deps/meme_bin-discretize.Tpo .deps/meme_bin-discretize.Po >mv -f .deps/meme_bin-branching_search.Tpo .deps/meme_bin-branching_search.Po >mv -f .deps/meme_bin-hash_table.Tpo .deps/meme_bin-hash_table.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-logs.o -MD -MP -MF .deps/meme_bin-logs.Tpo -c -o meme_bin-logs.o `test -f 'logs.c' || echo './'`logs.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-mast-util.o -MD -MP -MF .deps/meme_bin-mast-util.Tpo -c -o meme_bin-mast-util.o `test -f 'mast-util.c' || echo './'`mast-util.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme.o -MD -MP -MF .deps/meme_bin-meme.Tpo -c -o meme_bin-meme.o `test -f 'meme.c' || echo './'`meme.c >mv -f .deps/meme_bin-linked-list.Tpo .deps/meme_bin-linked-list.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme-print-html.o -MD -MP -MF .deps/meme_bin-meme-print-html.Tpo -c -o meme_bin-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c >mv -f .deps/meme_bin-justlike.Tpo .deps/meme_bin-justlike.Po >mv -f .deps/meme_bin-calculate_p_y.Tpo .deps/meme_bin-calculate_p_y.Po >mv -f .deps/meme_bin-em.Tpo .deps/meme_bin-em.Po >mv -f .deps/meme_bin-likelihood.Tpo .deps/meme_bin-likelihood.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme_util.o -MD -MP -MF .deps/meme_bin-meme_util.Tpo -c -o meme_bin-meme_util.o `test -f 'meme_util.c' || echo './'`meme_util.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-merger.o -MD -MP -MF .deps/meme_bin-merger.Tpo -c -o meme_bin-merger.o `test -f 'merger.c' || echo './'`merger.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-message.o -MD -MP -MF .deps/meme_bin-message.Tpo -c -o meme_bin-message.o `test -f 'message.c' || echo './'`message.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-motifs.o -MD -MP -MF .deps/meme_bin-motifs.Tpo -c -o meme_bin-motifs.o `test -f 'motifs.c' || echo './'`motifs.c >mv -f .deps/meme_bin-logs.Tpo .deps/meme_bin-logs.Po >mv -f .deps/meme_bin-meme-print-html.Tpo .deps/meme_bin-meme-print-html.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-mp.o -MD -MP -MF .deps/meme_bin-mp.Tpo -c -o meme_bin-mp.o `test -f 'mp.c' || echo './'`mp.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-oops.o -MD -MP -MF .deps/meme_bin-oops.Tpo -c -o meme_bin-oops.o `test -f 'oops.c' || echo './'`oops.c >mv -f .deps/meme_bin-dpalign.Tpo .deps/meme_bin-dpalign.Po >mast.c: In function âprint_mast_resultsâ: >mast.c:1165: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >mv -f .deps/mast.Tpo .deps/mast.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-partition.o -MD -MP -MF .deps/meme_bin-partition.Tpo -c -o meme_bin-partition.o `test -f 'partition.c' || echo './'`partition.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-prior.o -MD -MP -MF .deps/meme_bin-prior.Tpo -c -o meme_bin-prior.o `test -f 'prior.c' || echo './'`prior.c >mv -f .deps/meme_bin-message.Tpo .deps/meme_bin-message.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-pssm-distr.o -MD -MP -MF .deps/meme_bin-pssm-distr.Tpo -c -o meme_bin-pssm-distr.o `test -f 'pssm-distr.c' || echo './'`pssm-distr.c >mv -f .deps/meme_bin-mp.Tpo .deps/meme_bin-mp.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-read_seq_file.o -MD -MP -MF .deps/meme_bin-read_seq_file.Tpo -c -o meme_bin-read_seq_file.o `test -f 'read_seq_file.c' || echo './'`read_seq_file.c >mv -f .deps/meme_bin-merger.Tpo .deps/meme_bin-merger.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-red-black-tree.o -MD -MP -MF .deps/meme_bin-red-black-tree.Tpo -c -o meme_bin-red-black-tree.o `test -f 'red-black-tree.c' || echo './'`red-black-tree.c >meme.c: In function âmainâ: >meme.c:179: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result >mv -f .deps/meme_bin-meme.Tpo .deps/meme_bin-meme.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-regress.o -MD -MP -MF .deps/meme_bin-regress.Tpo -c -o meme_bin-regress.o `test -f 'regress.c' || echo './'`regress.c >mv -f .deps/meme_bin-mast-util.Tpo .deps/meme_bin-mast-util.Po >mv -f .deps/meme_bin-llr.Tpo .deps/meme_bin-llr.Po >mv -f .deps/meme_bin-motifs.Tpo .deps/meme_bin-motifs.Po >mv -f .deps/meme_bin-partition.Tpo .deps/meme_bin-partition.Po >mv -f .deps/meme_bin-pssm-distr.Tpo .deps/meme_bin-pssm-distr.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seed.o -MD -MP -MF .deps/meme_bin-seed.Tpo -c -o meme_bin-seed.o `test -f 'seed.c' || echo './'`seed.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seed_diffs.o -MD -MP -MF .deps/meme_bin-seed_diffs.Tpo -c -o meme_bin-seed_diffs.o `test -f 'seed_diffs.c' || echo './'`seed_diffs.c >mv -f .deps/meme_bin-logodds.Tpo .deps/meme_bin-logodds.Po >mv -f .deps/meme_bin-display.Tpo .deps/meme_bin-display.Po >mv -f .deps/meme_bin-oops.Tpo .deps/meme_bin-oops.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seq2theta.o -MD -MP -MF .deps/meme_bin-seq2theta.Tpo -c -o meme_bin-seq2theta.o `test -f 'seq2theta.c' || echo './'`seq2theta.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-sp_matrix.o -MD -MP -MF .deps/meme_bin-sp_matrix.Tpo -c -o meme_bin-sp_matrix.o `test -f 'sp_matrix.c' || echo './'`sp_matrix.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-starts.o -MD -MP -MF .deps/meme_bin-starts.Tpo -c -o meme_bin-starts.o `test -f 'starts.c' || echo './'`starts.c >mv -f .deps/meme_bin-meme_util.Tpo .deps/meme_bin-meme_util.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-string-list.o -MD -MP -MF .deps/meme_bin-string-list.Tpo -c -o meme_bin-string-list.o `test -f 'string-list.c' || echo './'`string-list.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-subseq7.o -MD -MP -MF .deps/meme_bin-subseq7.Tpo -c -o meme_bin-subseq7.o `test -f 'subseq7.c' || echo './'`subseq7.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-tcm.o -MD -MP -MF .deps/meme_bin-tcm.Tpo -c -o meme_bin-tcm.o `test -f 'tcm.c' || echo './'`tcm.c >prior.c: In function âread_PriorLibâ: >prior.c:82: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:92: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:121: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:124: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:125: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:129: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:130: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:135: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:137: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:142: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:143: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:146: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:147: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >prior.c:150: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >prior.c:156: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >mv -f .deps/meme_bin-prior.Tpo .deps/meme_bin-prior.Po >mv -f .deps/meme_bin-regress.Tpo .deps/meme_bin-regress.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-verbosity.o -MD -MP -MF .deps/meme_bin-verbosity.Tpo -c -o meme_bin-verbosity.o `test -f 'verbosity.c' || echo './'`verbosity.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_io-meme-io.o -MD -MP -MF .deps/meme_io-meme-io.Tpo -c -o meme_io-meme-io.o `test -f 'meme-io.c' || echo './'`meme-io.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_xml_html-meme-xml-html.o -MD -MP -MF .deps/meme_xml_html-meme-xml-html.Tpo -c -o meme_xml_html-meme-xml-html.o `test -f 'meme-xml-html.c' || echo './'`meme-xml-html.c >mv -f .deps/meme_bin-init.Tpo .deps/meme_bin-init.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_xml_html-meme-print-html.o -MD -MP -MF .deps/meme_xml_html-meme-print-html.Tpo -c -o meme_xml_html-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c >mv -f .deps/meme_bin-read_seq_file.Tpo .deps/meme_bin-read_seq_file.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmm-mhmm.o -MD -MP -MF .deps/mhmm-mhmm.Tpo -c -o mhmm-mhmm.o `test -f 'mhmm.c' || echo './'`mhmm.c >mv -f .deps/meme_bin-seed.Tpo .deps/meme_bin-seed.Po >mv -f .deps/meme_bin-verbosity.Tpo .deps/meme_bin-verbosity.Po >mv -f .deps/meme_bin-red-black-tree.Tpo .deps/meme_bin-red-black-tree.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmm_io-mhmm-io.o -MD -MP -MF .deps/mhmm_io-mhmm-io.Tpo -c -o mhmm_io-mhmm-io.o `test -f 'mhmm-io.c' || echo './'`mhmm-io.c >mv -f .deps/meme_bin-starts.Tpo .deps/meme_bin-starts.Po >mv -f .deps/meme_bin-tcm.Tpo .deps/meme_bin-tcm.Po >mv -f .deps/meme_xml_html-meme-print-html.Tpo .deps/meme_xml_html-meme-print-html.Po >mv -f .deps/meme_xml_html-meme-xml-html.Tpo .deps/meme_xml_html-meme-xml-html.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmme.o -MD -MP -MF .deps/mhmme.Tpo -c -o mhmme.o mhmme.c >mv -f .deps/meme_bin-seed_diffs.Tpo .deps/meme_bin-seed_diffs.Po >mv -f .deps/meme_bin-seq2theta.Tpo .deps/meme_bin-seq2theta.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmms-mhmms.o -MD -MP -MF .deps/mhmms-mhmms.Tpo -c -o mhmms-mhmms.o `test -f 'mhmms.c' || echo './'`mhmms.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmmscan-mhmmscan.o -MD -MP -MF .deps/mhmmscan-mhmmscan.Tpo -c -o mhmmscan-mhmmscan.o `test -f 'mhmmscan.c' || echo './'`mhmmscan.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT motiph-motiph.o -MD -MP -MF .deps/motiph-motiph.Tpo -c -o motiph-motiph.o `test -f 'motiph.c' || echo './'`motiph.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pmp_bf-pmp_bf.o -MD -MP -MF .deps/pmp_bf-pmp_bf.Tpo -c -o pmp_bf-pmp_bf.o `test -f 'pmp_bf.c' || echo './'`pmp_bf.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT readseq.o -MD -MP -MF .deps/readseq.Tpo -c -o readseq.o readseq.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ureadseq.o -MD -MP -MF .deps/ureadseq.Tpo -c -o ureadseq.o ureadseq.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT shadow-shadow.o -MD -MP -MF .deps/shadow-shadow.Tpo -c -o shadow-shadow.o `test -f 'shadow.c' || echo './'`shadow.c >mv -f .deps/meme_bin-string-list.Tpo .deps/meme_bin-string-list.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tomtom-tomtom.o -MD -MP -MF .deps/tomtom-tomtom.Tpo -c -o tomtom-tomtom.o `test -f 'tomtom.c' || echo './'`tomtom.c >mv -f .deps/meme_bin-sp_matrix.Tpo .deps/meme_bin-sp_matrix.Po >mv -f .deps/meme_bin-subseq7.Tpo .deps/meme_bin-subseq7.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tree-tree.o -MD -MP -MF .deps/tree-tree.Tpo -c -o tree-tree.o `test -f 'tree.c' || echo './'`tree.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT qvalue-qvalue.o -MD -MP -MF .deps/qvalue-qvalue.Tpo -c -o qvalue-qvalue.o `test -f 'qvalue.c' || echo './'`qvalue.c >mhmm-io.c: In function âmainâ: >mhmm-io.c:67: warning: format not a string literal and no format arguments >mv -f .deps/mhmm_io-mhmm-io.Tpo .deps/mhmm_io-mhmm-io.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ranksum_test-ranksum_test.o -MD -MP -MF .deps/ranksum_test-ranksum_test.Tpo -c -o ranksum_test-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c >mhmme.c: In function âmainâ: >mhmme.c:171: warning: format not a string literal and no format arguments >mv -f .deps/mhmme.Tpo .deps/mhmme.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT reconcile_tree_alignment-reconcile-tree-alignment.o -MD -MP -MF .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo -c -o reconcile_tree_alignment-reconcile-tree-alignment.o `test -f 'reconcile-tree-alignment.c' || echo './'`reconcile-tree-alignment.c >mhmm.c: In function âmainâ: >mhmm.c:826: warning: format not a string literal and no format arguments >mv -f .deps/mhmm-mhmm.Tpo .deps/mhmm-mhmm.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT reduce_alignment-reduce-alignment.o -MD -MP -MF .deps/reduce_alignment-reduce-alignment.Tpo -c -o reduce_alignment-reduce-alignment.o `test -f 'reduce-alignment.c' || echo './'`reduce-alignment.c >pmp_bf.c: In function âmainâ: >pmp_bf.c:175: warning: format not a string literal and no format arguments >mv -f .deps/pmp_bf-pmp_bf.Tpo .deps/pmp_bf-pmp_bf.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT remove_alignment_gaps-remove-alignment-gaps.o -MD -MP -MF .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo -c -o remove_alignment_gaps-remove-alignment-gaps.o `test -f 'remove-alignment-gaps.c' || echo './'`remove-alignment-gaps.c >meme-io.c: In function âmainâ: >meme-io.c:1581: warning: format not a string literal and no format arguments >mv -f .deps/meme_io-meme-io.Tpo .deps/meme_io-meme-io.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT xsltproc_lite-xsltproc_lite.o -MD -MP -MF .deps/xsltproc_lite-xsltproc_lite.Tpo -c -o xsltproc_lite-xsltproc_lite.o `test -f 'xsltproc_lite.c' || echo './'`xsltproc_lite.c >motiph.c: In function âmainâ: >motiph.c:348: warning: format not a string literal and no format arguments >mv -f .deps/motiph-motiph.Tpo .deps/motiph-motiph.Po >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o liblogo.la liblogo_la-ceqlogo.lo -lm >mv -f .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo .deps/reconcile_tree_alignment-reconcile-tree-alignment.Po >mv -f .deps/reduce_alignment-reduce-alignment.Tpo .deps/reduce_alignment-reduce-alignment.Po >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o libcommon.la libcommon_la-array.lo libcommon_la-background.lo libcommon_la-hash_table.lo libcommon_la-hash_alph.lo libcommon_la-heap.lo libcommon_la-io.lo libcommon_la-meme-io.lo libcommon_la-matrix.lo libcommon_la-motif.lo libcommon_la-psp.lo libcommon_la-rdb-matrix.lo libcommon_la-read_sequence.lo libcommon_la-read_csv.lo libcommon_la-read_tamo.lo libcommon_la-utils.lo libcommon_la-xml-util.lo libcommon_la-zscore.lo -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o glam2-utils.o glam2-matrix.o glam2-array.o glam2-io.o glam2-ceqlogo.o -lm >ranksum_test.c: In function âmainâ: >ranksum_test.c:644: warning: format not a string literal and no format arguments >shadow.c: In function âmainâ: >shadow.c:256: warning: format not a string literal and no format arguments >mv -f .deps/shadow-shadow.Tpo .deps/shadow-shadow.Po >mhmmscan.c: In function âmainâ: >mhmmscan.c:593: warning: format not a string literal and no format arguments >mv -f .deps/mhmmscan-mhmmscan.Tpo .deps/mhmmscan-mhmmscan.Po >mv -f .deps/ranksum_test-ranksum_test.Tpo .deps/ranksum_test-ranksum_test.Po >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o glam2scan-utils.o glam2scan-array.o -lm >qvalue.c: In function âmainâ: >qvalue.c:564: warning: format not a string literal and no format arguments >xsltproc_lite.c: In function âmainâ: >xsltproc_lite.c:21: warning: format not a string literal and no format arguments >tree.c: In function âread_nodeâ: >tree.c:509: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >tree.c:540: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >tree.c: In function âread_treeâ: >tree.c:571: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result >tree.c: In function âmainâ: >tree.c:1271: warning: format not a string literal and no format arguments >mv -f .deps/tree-tree.Tpo .deps/tree-tree.Po >readseq.c: In function âusageâ: >readseq.c:333: warning: format not a string literal and no format arguments >readseq.c: In function âchooseFormatâ: >readseq.c:424: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >readseq.c: In function âmainâ: >readseq.c:781: warning: format not a string literal and no format arguments >readseq.c:981: warning: format not a string literal and no format arguments >readseq.c:774: warning: ignoring return value of âwriteâ, declared with attribute warn_unused_result >readseq.c:788: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >readseq.c:853: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >readseq.c:899: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result >readseq.c:925: warning: ignoring return value of âfreopenâ, declared with attribute warn_unused_result >mv -f .deps/readseq.Tpo .deps/readseq.Po >mv -f .deps/qvalue-qvalue.Tpo .deps/qvalue-qvalue.Po >mv -f .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo .deps/remove_alignment_gaps-remove-alignment-gaps.Po >mv -f .deps/xsltproc_lite-xsltproc_lite.Tpo .deps/xsltproc_lite-xsltproc_lite.Po >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm >libtool: link: i686-pc-linux-gnu-ar cru .libs/liblogo.a .libs/liblogo_la-ceqlogo.o >libtool: link: i686-pc-linux-gnu-ranlib .libs/liblogo.a >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o glam2-utils.o glam2-matrix.o glam2-array.o glam2-io.o glam2-ceqlogo.o -lm >libtool: link: ( cd ".libs" && rm -f "liblogo.la" && ln -s "../liblogo.la" "liblogo.la" ) >mhmms.c: In function âmainâ: >mhmms.c:1486: warning: format not a string literal and no format arguments >mv -f .deps/mhmms-mhmms.Tpo .deps/mhmms-mhmms.Po >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o glam2scan-utils.o glam2scan-array.o -lm >libtool: link: i686-pc-linux-gnu-ar cru .libs/libcommon.a .libs/libcommon_la-array.o .libs/libcommon_la-background.o .libs/libcommon_la-hash_table.o .libs/libcommon_la-hash_alph.o .libs/libcommon_la-heap.o .libs/libcommon_la-io.o .libs/libcommon_la-meme-io.o .libs/libcommon_la-matrix.o .libs/libcommon_la-motif.o .libs/libcommon_la-psp.o .libs/libcommon_la-rdb-matrix.o .libs/libcommon_la-read_sequence.o .libs/libcommon_la-read_csv.o .libs/libcommon_la-read_tamo.o .libs/libcommon_la-utils.o .libs/libcommon_la-xml-util.o .libs/libcommon_la-zscore.o >libtool: link: i686-pc-linux-gnu-ranlib .libs/libcommon.a >libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" ) >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o libmetameme.la libmetameme_la-ama_scan.lo libmetameme_la-alignment.lo libmetameme_la-alphabet.lo libmetameme_la-array-list.lo libmetameme_la-beadstring-xml.lo libmetameme_la-binary-search.lo libmetameme_la-build-hmm.lo libmetameme_la-cisml.lo libmetameme_la-clustalw-io.lo libmetameme_la-dp.lo libmetameme_la-evomodel.lo libmetameme_la-evomodel_with_loss.lo libmetameme_la-fasta-io.lo libmetameme_la-fitevd.lo libmetameme_la-gendb.lo libmetameme_la-karlin.lo libmetameme_la-linked-list.lo libmetameme_la-log-hmm.lo libmetameme_la-match.lo libmetameme_la-merger.lo libmetameme_la-metameme.lo libmetameme_la-mhmm.lo libmetameme_la-mhmms.lo libmetameme_la-mhmm-state.lo libmetameme_la-motiph-scoring.lo libmetameme_la-object-list.lo libmetameme_la-order.lo libmetameme_la-params.lo libmetameme_la-pssm.lo libmetameme_la-qsort.lo libmetameme_la-qvalue.lo libmetameme_la-ranksum_test.lo libmetameme_la-read-mhmm.lo libmetameme_la-red-black-tree.lo libmetameme_la-scored-sites.lo libmetameme_la-seq.lo libmetameme_la-simple-getopt.lo libmetameme_la-string-list.lo libmetameme_la-subst-matrix.lo libmetameme_la-substmatrix-table.lo libmetameme_la-tomtom.lo libmetameme_la-tree.lo libmetameme_la-utils.lo libmetameme_la-write-mhmm.lo libcommon.la liblogo.la -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o getsize getsize.o libcommon.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o alphtype alphtype.o libcommon.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o libcommon.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2mask glam2_glam2mask.o glam2_alignment.o glam2_fasta.o glam2_util.o libcommon.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mast.bin diagram.o logodds.o mast.o mast-util.o motifs.o pssm-distr.o regress.o libcommon.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme.bin meme_bin-alphabet.o meme_bin-array-list.o meme_bin-banner.o meme_bin-binary-search.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-hash_table.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-linked-list.o meme_bin-llr.o meme_bin-logodds.o meme_bin-logs.o meme_bin-mast-util.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-merger.o meme_bin-message.o meme_bin-motifs.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-pssm-distr.o meme_bin-read_seq_file.o meme_bin-red-black-tree.o meme_bin-regress.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-string-list.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o liblogo.la libcommon.la -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm >mv -f .deps/tomtom-tomtom.Tpo .deps/tomtom-tomtom.Po >libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >In file included from /usr/include/string.h:641, > from macros.h:56, > from ureadseq.h:17, > from ureadseq.c:38: >In function âstrcpyâ, > inlined from âwriteSeqâ at ureadseq.c:1765: >/usr/include/bits/string3.h:107: warning: call to __builtin___strcpy_chk will always overflow destination buffer >mv -f .deps/ureadseq.Tpo .deps/ureadseq.Po >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o readseq readseq.o ureadseq.o -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o getsize getsize.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mast.bin diagram.o logodds.o mast.o mast-util.o motifs.o pssm-distr.o regress.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o alphtype alphtype.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o readseq readseq.o ureadseq.o -lm >libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2mask glam2_glam2mask.o glam2_alignment.o glam2_fasta.o glam2_util.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme.bin meme_bin-alphabet.o meme_bin-array-list.o meme_bin-banner.o meme_bin-binary-search.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-hash_table.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-linked-list.o meme_bin-llr.o meme_bin-logodds.o meme_bin-logs.o meme_bin-mast-util.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-merger.o meme_bin-message.o meme_bin-motifs.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-pssm-distr.o meme_bin-read_seq_file.o meme_bin-red-black-tree.o meme_bin-regress.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-string-list.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o ./.libs/liblogo.a ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: (cd .libs/libmetameme.lax/libcommon.a && i686-pc-linux-gnu-ar x "/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/./.libs/libcommon.a") >libtool: link: (cd .libs/libmetameme.lax/liblogo.a && i686-pc-linux-gnu-ar x "/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/./.libs/liblogo.a") >libtool: link: i686-pc-linux-gnu-ar cru .libs/libmetameme.a .libs/libmetameme_la-ama_scan.o .libs/libmetameme_la-alignment.o .libs/libmetameme_la-alphabet.o .libs/libmetameme_la-array-list.o .libs/libmetameme_la-beadstring-xml.o .libs/libmetameme_la-binary-search.o .libs/libmetameme_la-build-hmm.o .libs/libmetameme_la-cisml.o .libs/libmetameme_la-clustalw-io.o .libs/libmetameme_la-dp.o .libs/libmetameme_la-evomodel.o .libs/libmetameme_la-evomodel_with_loss.o .libs/libmetameme_la-fasta-io.o .libs/libmetameme_la-fitevd.o .libs/libmetameme_la-gendb.o .libs/libmetameme_la-karlin.o .libs/libmetameme_la-linked-list.o .libs/libmetameme_la-log-hmm.o .libs/libmetameme_la-match.o .libs/libmetameme_la-merger.o .libs/libmetameme_la-metameme.o .libs/libmetameme_la-mhmm.o .libs/libmetameme_la-mhmms.o .libs/libmetameme_la-mhmm-state.o .libs/libmetameme_la-motiph-scoring.o .libs/libmetameme_la-object-list.o .libs/libmetameme_la-order.o .libs/libmetameme_la-params.o .libs/libmetameme_la-pssm.o .libs/libmetameme_la-qsort.o .libs/libmetameme_la-qvalue.o .libs/libmetameme_la-ranksum_test.o .libs/libmetameme_la-read-mhmm.o .libs/libmetameme_la-red-black-tree.o .libs/libmetameme_la-scored-sites.o .libs/libmetameme_la-seq.o .libs/libmetameme_la-simple-getopt.o .libs/libmetameme_la-string-list.o .libs/libmetameme_la-subst-matrix.o .libs/libmetameme_la-substmatrix-table.o .libs/libmetameme_la-tomtom.o .libs/libmetameme_la-tree.o .libs/libmetameme_la-utils.o .libs/libmetameme_la-write-mhmm.o .libs/libmetameme.lax/libcommon.a/libcommon_la-hash_alph.o .libs/libmetameme.lax/libcommon.a/libcommon_la-xml-util.o .libs/libmetameme.lax/libcommon.a/libcommon_la-meme-io.o .libs/libmetameme.lax/libcommon.a/libcommon_la-array.o .libs/libmetameme.lax/libcommon.a/libcommon_la-io.o .libs/libmetameme.lax/libcommon.a/libcommon_la-matrix.o .libs/libmetameme.lax/libcommon.a/libcommon_la-heap.o .libs/libmetameme.lax/libcommon.a/libcommon_la-motif.o .libs/libmetameme.lax/libcommon.a/libcommon_la-utils.o .libs/libmetameme.lax/libcommon.a/libcommon_la-psp.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_sequence.o .libs/libmetameme.lax/libcommon.a/libcommon_la-hash_table.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_tamo.o .libs/libmetameme.lax/libcommon.a/libcommon_la-background.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_csv.o .libs/libmetameme.lax/libcommon.a/libcommon_la-zscore.o .libs/libmetameme.lax/libcommon.a/libcommon_la-rdb-matrix.o .libs/libmetameme.lax/liblogo.a/liblogo_la-ceqlogo.o >libtool: link: i686-pc-linux-gnu-ranlib .libs/libmetameme.a >libtool: link: rm -fr .libs/libmetameme.lax >libtool: link: ( cd ".libs" && rm -f "libmetameme.la" && ln -s "../libmetameme.la" "libmetameme.la" ) >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ama ama-ama.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o beadstring beadstring-beadstring.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ceqlogo ceqlogo-ceqlogo.o libmetameme.la liblogo.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw-io clustalw_io-clustalw-io.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o draw-mhmm draw_mhmm-draw-mhmm.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fasta-io fasta_io-fasta-io.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fimo fimo-fimo.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fitevd fitevd-fitevd.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gendb gendb-gendb.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gomo gomo-gomo.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o log-hmm log_hmm-log-hmm.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-io meme_io-meme-io.o libmetameme.la -lxml2 -lz -lm -lm >libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ama ama-ama.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw-io clustalw_io-clustalw-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fitevd fitevd-fitevd.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o draw-mhmm draw_mhmm-draw-mhmm.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fasta-io fasta_io-fasta-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2fasta 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/usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o log-hmm log_hmm-log-hmm.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gomo gomo-gomo.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm mhmm-mhmm.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm-io mhmm_io-mhmm-io.o libmetameme.la -lm >libtool: link: i686-pc-linux-gnu-gcc -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ceqlogo ceqlogo-ceqlogo.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz ./.libs/liblogo.a -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmme mhmme.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmms mhmms-mhmms.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmmscan mhmmscan-mhmmscan.o libmetameme.la libcommon.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o motiph motiph-motiph.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o pmp_bf pmp_bf-pmp_bf.o libmetameme.la -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-io meme_io-meme-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o shadow shadow-shadow.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tomtom tomtom-tomtom.o libmetameme.la liblogo.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tree tree-tree.o libmetameme.la -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o qvalue qvalue-qvalue.o libmetameme.la -lm -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX 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mhmmscan-mhmmscan.o ./.libs/libmetameme.a -L/usr/lib ./.libs/libcommon.a /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o shadow shadow-shadow.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tomtom tomtom-tomtom.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz ./.libs/liblogo.a -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o qvalue qvalue-qvalue.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ranksum_test ranksum_test-ranksum_test.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tree tree-tree.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libmetameme.la -lm -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reduce-alignment reduce_alignment-reduce-alignment.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >Making all in scripts >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' cat_max.txt > cat_max >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' compare_dates.txt > compare_dates >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-fetch.txt > fasta-fetch >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-get-markov.txt > fasta-get-markov >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-make-index.txt > fasta-make-index >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-shuffle-letters.txt > fasta-shuffle-letters >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-unique-names.txt > fasta-unique-names >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' glam2html.py > glam2html >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' glam2psfm.py > glam2psfm >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' glam2scan2html.py > glam2scan2html >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' get_db_csv.txt > get_db_csv >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' jaspar2meme.pl > jaspar2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' hart2meme-bkg.pl > hart2meme-bkg >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' hartemink2psp.pl > hartemink2psp >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' iupac2meme.pl > iupac2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' make_logodds.txt > make_logodds >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mast.txt > mast >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mast2html.pl > mast2html >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' meme.txt > meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mcast.pl > mcast >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' memehtml2text.pl > memehtml2text >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mhmm2html.pl > mhmm2html >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' motif2meme.pm.in > motif2meme.pm >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' priority2meme.pl > priority2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' scpd2meme.pl > scpd2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' tamo2meme.pl > tamo2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' transfac2meme.txt > transfac2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' uniprobe2meme.pl > uniprobe2meme >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' update_db.txt > update_db >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' convert2html.txt > convert2html.pl >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >Making all in tests >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >Making all in common >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' >Making all in clustalw2fasta >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' >Making all in draw-mhmm >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' >Making all in mast >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' >Making all in meme >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' >Making all in mhmm >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' >Making all in mhmms >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' >Making all in motiph >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' >Making all in scaffold >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' >Making all in tomtom >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' >Making all in gomo >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' >Making all in qvalue >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' >Making all in web >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >make[3]: Nothing to be done for `all-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >Making all in website >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >Making all in scripts >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' changetoweb.txt > changetoweb >sed -e 's%use lib qw(.)%use lib qw(/opt/meme/lib/perl)%' \ > -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' metameme.txt > metameme >sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' oldmeme2meme.txt > oldmeme2meme >/bin/sed -e 's%@SITE_CONTACT@%@tinderbox%' -e 's%@METAMEME_SITE_CONTACT@%%' -e 's%@BIN_DIR@%/opt/meme/bin%' -e 's%@MODULE_DIR@%/opt/meme/lib/perl%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@METAMEMEDIR@%/opt/meme%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@WEB_DIR@%/opt/meme/web%' -e 's%@METAMEME_WEB_DIR@%%' -e 's%@MAX_TIME@%7200%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@METAMEME_SITE_URL@%%' Globals.txt > Globals.pm >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >make[3]: Nothing to be done for `all-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >Making all in doc >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >Making all in examples >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >Making all in fimo_example_output_files >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' >Making all in glam2_example_output_files >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' >Making all in glam2scan_example_output_files >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' >Making all in meme_example_output_files >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' >Making all in mast_example_output_files >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' >Making all in tomtom_example_output_files >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' >make[4]: Nothing to be done for `all'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >make[4]: Nothing to be done for `all-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >Making all in images >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' >Making all in . >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >../src/xsltproc_lite ./options.xsl alphtype.xml alphtype.html >../src/xsltproc_lite ./options.xsl ama.xml ama.html >../src/xsltproc_lite ./options.xsl beadstring.xml beadstring.html >../src/xsltproc_lite ./options.xsl ceqlogo.xml ceqlogo.html >../src/xsltproc_lite ./options.xsl clustalw2phylip.xml clustalw2phylip.html >../src/xsltproc_lite ./options.xsl draw-mhmm.xml draw-mhmm.html >../src/xsltproc_lite ./options.xsl fasta-get-markov.xml fasta-get-markov.html >../src/xsltproc_lite ./options.xsl fasta-io.xml fasta-io.html >../src/xsltproc_lite ./options.xsl fimo.xml fimo.html >../src/xsltproc_lite ./options.xsl fitevd.xml fitevd.html >../src/xsltproc_lite ./options.xsl gendb.xml gendb.html >../src/xsltproc_lite ./options.xsl getsize.xml getsize.html >../src/xsltproc_lite ./options.xsl gomo.xml gomo.html >../src/xsltproc_lite ./options.xsl log-hmm.xml log-hmm.html >../src/xsltproc_lite ./options.xsl meme-io.xml meme-io.html >../src/xsltproc_lite ./options.xsl mhmm.xml mhmm.html >../src/xsltproc_lite ./options.xsl mhmme.xml mhmme.html >../src/xsltproc_lite ./options.xsl mhmms.xml mhmms.html >../src/xsltproc_lite ./options.xsl miao.xml miao.html >/bin/sed -e 's%\@VERSION\@%4.3.0%g' -e 's%\@CONTACT\@%@tinderbox%g' -e 's%\@METAMEME_CONTACT\@%%g' -e 's%\@URL\@%http://tinderbox/meme%g' modified-template-footer.in > modified-template-footer.js >../src/xsltproc_lite ./options.xsl motiph.xml motiph.html >../src/xsltproc_lite ./options.xsl pmp_bf.xml pmp_bf.html >../src/xsltproc_lite ./options.xsl qvalue.xml qvalue.html >../src/xsltproc_lite ./options.xsl readseq.xml readseq.html >../src/xsltproc_lite ./options.xsl reconcile-tree-alignment.xml reconcile-tree-alignment.html >../src/xsltproc_lite ./options.xsl reduce-alignment.xml reduce-alignment.html >../src/xsltproc_lite ./options.xsl remove-alignment-gaps.xml remove-alignment-gaps.html >../src/xsltproc_lite ./options.xsl shadow.xml shadow.html >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >Making all in etc >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' fimo.sh.in > fimo.sh >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' glam2.sh.in > glam2.sh >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' glam2scan.sh.in > glam2scan.sh >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' gomo.sh.in > gomo.sh >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' mast.sh.in > mast.sh >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' meme-mast.sh.in > meme-mast.sh >/bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/fimo.sh%' fimo_config.xml.in > fimo_config.xml >/bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/glam2.sh%' glam2_config.xml.in > glam2_config.xml >/bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/glam2scan.sh%' glam2scan_config.xml.in > glam2scan_config.xml >/bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/gomo.sh%' gomo_config.xml.in > gomo_config.xml >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@METAMEME_URL@%http://tinderbox/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' gomo.xsl.in > gomo.xsl >/bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/mast.sh%' mast_config.xml.in > mast_config.xml >echo '#<db_root>,<prot?>,<nuc?>,<short_seqs?>,<db_menu_name>,<db_long_name>,<protein_url>,<nuc_url>' > mast_db_names.csv >/bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/meme-mast.sh%' meme_config.xml.in > meme_config.xml >/bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@METAMEME_URL@%http://tinderbox/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' meme.xsl.in > meme.xsl >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >>>> Source compiled. > [33;01m*[0m Tinderbox QA Notice: 'make' called by src_test >make -j14 test >cd scripts; make check >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >make check-TESTS >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' metatest.pl > metatest >chmod ugo+x metatest > > Meme test for > --------------------------------- > Dataset Model result > --------------------------------- > crp0 oops OK > crp0 zoops OK > crp0 tcm OK > psp_test zoops_psp OK > > Mast test for > --------------------------------- > Dataset Model result > --------------------------------- > crp0 oops OK > crp0 zoops OK > crp0 tcm OK > >PASS: runcheck >testdir = ../tests >************************************************************ >Testing mhmms . . . >/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/mhmms --maxseqs 3 --quiet mhmm/crp0.linear.mhmm common/crp0.fasta >sh: /var/tmp/mhmms.3218.tmp: Permission denied >sh: /var/tmp/mhmms.3218.tmp.sed: Permission denied >diff: /var/tmp/mhmms.3218.tmp.sed: No such file or directory >FAIL >mhmms had a non-zero exit status (1) >FAIL: metatest >=================== >1 of 2 tests failed >=================== >make[2]: *** [check-TESTS] Error 1 >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >make[1]: *** [check-am] Error 2 >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >make: *** [test] Error 2 > [31;01m*[0m ERROR: sci-biology/meme-4.3.0 failed: > [31;01m*[0m Regression tests failed. > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 61: Called src_test > [31;01m*[0m environment, line 2969: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m make test || die "Regression tests failed." > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sci-biology/meme-4.3.0', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-biology/meme-4.3.0'. > [31;01m*[0m The complete build log is located at '/var/log/portage/build/sci-biology/meme-4.3.0:20091215-173742.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/meme-4.3.0/temp/environment'. > [31;01m*[0m S: '/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' > >>>> Install meme-4.3.0 into /var/tmp/portage/sci-biology/meme-4.3.0/image/ category sci-biology >make -j14 install DESTDIR=/var/tmp/portage/sci-biology/meme-4.3.0/image/ >Making install in src >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make install-recursive >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >Making install in filters >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >Making install in purge >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' >test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" >make[5]: Nothing to be done for `install-data-am'. > /bin/sh ../../../libtool --mode=install /usr/bin/install -c 'purge' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/purge' >libtool: install: /usr/bin/install -c purge /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/purge >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' >Making install in dust >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' >test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" >make[5]: Nothing to be done for `install-data-am'. > /bin/sh ../../../libtool --mode=install /usr/bin/install -c 'dust' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/dust' >libtool: install: /usr/bin/install -c dust /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/dust >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >make[5]: Nothing to be done for `install-exec-am'. >make[5]: Nothing to be done for `install-data-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' >Making install in libxml2 >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[5]: Nothing to be done for `install-exec-am'. >make[5]: Nothing to be done for `install-data-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' >Making install in libxslt >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' >Making install in . >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" >make[4]: Nothing to be done for `install-data-am'. > /bin/sh ../libtool --mode=install /usr/bin/install -c 'alphtype' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/alphtype' >libtool: install: /usr/bin/install -c alphtype /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/alphtype > /bin/sh ../libtool --mode=install /usr/bin/install -c 'ama' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ama' >libtool: install: /usr/bin/install -c ama /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ama > /bin/sh ../libtool --mode=install /usr/bin/install -c 'beadstring' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/beadstring' >libtool: install: /usr/bin/install -c beadstring /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/beadstring > /bin/sh ../libtool --mode=install /usr/bin/install -c 'ceqlogo' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ceqlogo' >libtool: install: /usr/bin/install -c ceqlogo /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ceqlogo > /bin/sh ../libtool --mode=install /usr/bin/install -c 'clustalw-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw-io' >libtool: install: /usr/bin/install -c clustalw-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw-io > /bin/sh ../libtool --mode=install /usr/bin/install -c 'clustalw2fasta' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2fasta' >libtool: install: /usr/bin/install -c clustalw2fasta /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2fasta > /bin/sh ../libtool --mode=install /usr/bin/install -c 'clustalw2phylip' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2phylip' >libtool: install: /usr/bin/install -c clustalw2phylip /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2phylip > /bin/sh ../libtool --mode=install /usr/bin/install -c 'draw-mhmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/draw-mhmm' >libtool: install: /usr/bin/install -c draw-mhmm /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/draw-mhmm > /bin/sh ../libtool --mode=install /usr/bin/install -c 'fasta-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-io' >libtool: install: /usr/bin/install -c fasta-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-io > /bin/sh ../libtool --mode=install /usr/bin/install -c 'fimo' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fimo' >libtool: install: /usr/bin/install -c fimo /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fimo > /bin/sh ../libtool --mode=install /usr/bin/install -c 'fitevd' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fitevd' >libtool: install: /usr/bin/install -c fitevd /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fitevd > /bin/sh ../libtool --mode=install /usr/bin/install -c 'gendb' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gendb' >libtool: install: /usr/bin/install -c gendb /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gendb > /bin/sh ../libtool --mode=install /usr/bin/install -c 'getsize' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/getsize' >libtool: install: /usr/bin/install -c getsize /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/getsize > /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2' >libtool: install: /usr/bin/install -c glam2 /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2 > /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2format' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2format' >libtool: install: /usr/bin/install -c glam2format /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2format > /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2mask' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2mask' >libtool: install: /usr/bin/install -c glam2mask /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2mask > /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2scan' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan' >libtool: install: /usr/bin/install -c glam2scan /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan > /bin/sh ../libtool --mode=install /usr/bin/install -c 'gomo' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gomo' >libtool: install: /usr/bin/install -c gomo /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gomo > /bin/sh ../libtool --mode=install /usr/bin/install -c 'log-hmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/log-hmm' >libtool: install: /usr/bin/install -c log-hmm /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/log-hmm > /bin/sh ../libtool --mode=install /usr/bin/install -c 'mast.bin' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast.bin' >libtool: install: /usr/bin/install -c mast.bin /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast.bin > /bin/sh ../libtool --mode=install /usr/bin/install -c 'meme.bin' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme.bin' >libtool: install: /usr/bin/install -c meme.bin /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme.bin > /bin/sh ../libtool --mode=install /usr/bin/install -c 'meme-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-io' >libtool: install: /usr/bin/install -c meme-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-io > /bin/sh ../libtool --mode=install /usr/bin/install -c 'meme-xml-html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-xml-html' >libtool: install: /usr/bin/install -c meme-xml-html /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-xml-html > /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm' >libtool: install: /usr/bin/install -c mhmm /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm > /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmm-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm-io' >libtool: install: /usr/bin/install -c mhmm-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm-io > /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmme' >libtool: install: /usr/bin/install -c mhmme /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmme > /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmms' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmms' >libtool: install: /usr/bin/install -c mhmms /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmms > /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmmscan' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmmscan' >libtool: install: /usr/bin/install -c mhmmscan /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmmscan > /bin/sh ../libtool --mode=install /usr/bin/install -c 'motiph' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motiph' >libtool: install: /usr/bin/install -c motiph /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motiph > /bin/sh ../libtool --mode=install /usr/bin/install -c 'pmp_bf' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/pmp_bf' >libtool: install: /usr/bin/install -c pmp_bf /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/pmp_bf > /bin/sh ../libtool --mode=install /usr/bin/install -c 'readseq' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/readseq' >libtool: install: /usr/bin/install -c readseq /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/readseq > /bin/sh ../libtool --mode=install /usr/bin/install -c 'shadow' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/shadow' >libtool: install: /usr/bin/install -c shadow /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/shadow > /bin/sh ../libtool --mode=install /usr/bin/install -c 'tomtom' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tomtom' >libtool: install: /usr/bin/install -c tomtom /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tomtom > /bin/sh ../libtool --mode=install /usr/bin/install -c 'tree' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tree' >libtool: install: /usr/bin/install -c tree /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tree > /bin/sh ../libtool --mode=install /usr/bin/install -c 'qvalue' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/qvalue' >libtool: install: /usr/bin/install -c qvalue /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/qvalue > /bin/sh ../libtool --mode=install /usr/bin/install -c 'ranksum_test' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ranksum_test' >libtool: install: /usr/bin/install -c ranksum_test /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ranksum_test > /bin/sh ../libtool --mode=install /usr/bin/install -c 'reconcile-tree-alignment' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reconcile-tree-alignment' >libtool: install: /usr/bin/install -c reconcile-tree-alignment /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reconcile-tree-alignment > /bin/sh ../libtool --mode=install /usr/bin/install -c 'reduce-alignment' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reduce-alignment' >libtool: install: /usr/bin/install -c reduce-alignment /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reduce-alignment > /bin/sh ../libtool --mode=install /usr/bin/install -c 'remove-alignment-gaps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/remove-alignment-gaps' >libtool: install: /usr/bin/install -c remove-alignment-gaps /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/remove-alignment-gaps > /bin/sh ../libtool --mode=install /usr/bin/install -c 'xsltproc_lite' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/xsltproc_lite' >libtool: install: /usr/bin/install -c xsltproc_lite /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/xsltproc_lite >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' >Making install in scripts >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" >test -z "/opt/meme/lib/perl" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl" > /usr/bin/install -c 'convert2html.pl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl/convert2html.pl' > /usr/bin/install -c 'cat_max' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/cat_max' > /usr/bin/install -c 'compare_dates' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/compare_dates' > /usr/bin/install -c 'download' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/download' > /usr/bin/install -c 'fasta-fetch' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-fetch' > /usr/bin/install -c 'fasta-get-markov' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-get-markov' > /usr/bin/install -c 'fasta-make-index' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-make-index' > /usr/bin/install -c 'fasta-shuffle-letters' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-shuffle-letters' > /usr/bin/install -c 'fasta-unique-names' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-unique-names' > /usr/bin/install -c 'glam2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2html' > /usr/bin/install -c 'glam2psfm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2psfm' > /usr/bin/install -c 'glam2scan2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan2html' > /usr/bin/install -c 'get_db_csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/get_db_csv' > /usr/bin/install -c 'jaspar2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/jaspar2meme' > /usr/bin/install -c 'hart2meme-bkg' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/hart2meme-bkg' > /usr/bin/install -c 'hartemink2psp' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/hartemink2psp' > /usr/bin/install -c 'iupac2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/iupac2meme' > /usr/bin/install -c 'make_logodds' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/make_logodds' > /usr/bin/install -c 'mast' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast' > /usr/bin/install -c 'mast2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast2html' > /usr/bin/install -c 'meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme' > /usr/bin/install -c 'mcast' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mcast' > /usr/bin/install -c 'memehtml2text' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/memehtml2text' > /usr/bin/install -c 'mhmm2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm2html' > /usr/bin/install -c 'motif2meme.pm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motif2meme.pm' > /usr/bin/install -c 'plotgen' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/plotgen' > /usr/bin/install -c 'priority2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/priority2meme' > /usr/bin/install -c 'sd' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/sd' > /usr/bin/install -c 'scpd2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/scpd2meme' > /usr/bin/install -c 'tamo2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tamo2meme' > /usr/bin/install -c 'transfac2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/transfac2meme' > /usr/bin/install -c 'uniprobe2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/uniprobe2meme' > /usr/bin/install -c 'update_db' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/update_db' > /usr/bin/install -c 'update_meme_tests' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/update_meme_tests' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' >Making install in tests >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >Making install in common >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' >Making install in clustalw2fasta >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' >Making install in draw-mhmm >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' >Making install in mast >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' >Making install in meme >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' >Making install in mhmm >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' >Making install in mhmms >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' >Making install in motiph >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' >Making install in scaffold >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' >Making install in tomtom >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' >Making install in gomo >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' >Making install in qvalue >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' >Making install in web >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' >Making install in website >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >Making install in scripts >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" >test -z "/opt/meme/lib/perl" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl" > /usr/bin/install -c 'Globals.pm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl/Globals.pm' > /usr/bin/install -c 'changetoweb' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/changetoweb' > /usr/bin/install -c 'metameme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/metameme' > /usr/bin/install -c 'oldmeme2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/oldmeme2meme' >make install-exec-hook >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >make[4]: Nothing to be done for `install-exec-hook'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' >Making install in doc >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >Making install in examples >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >Making install in fimo_example_output_files >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples/fimo_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files" > /usr/bin/install -c -m 644 'fimo.gff' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.gff' > /usr/bin/install -c -m 644 'fimo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.html' > /usr/bin/install -c -m 644 'fimo.txt' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.txt' > /usr/bin/install -c -m 644 'fimo.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.xml' > /usr/bin/install -c -m 644 'cisml.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/cisml.css' > /usr/bin/install -c -m 644 'fimo-to-html.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo-to-html.xsl' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' >Making install in glam2_example_output_files >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples/glam2_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files" > /usr/bin/install -c -m 644 'glam2.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/glam2.html' > /usr/bin/install -c -m 644 'logo1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo1.png' > /usr/bin/install -c -m 644 'logo_ssc1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc1.png' > /usr/bin/install -c -m 644 'logo2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo2.png' > /usr/bin/install -c -m 644 'logo_ssc2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc2.png' > /usr/bin/install -c -m 644 'logo3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo3.png' > /usr/bin/install -c -m 644 'logo_ssc3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc3.png' > /usr/bin/install -c -m 644 'logo4.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo4.png' > /usr/bin/install -c -m 644 'logo_ssc4.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc4.png' > /usr/bin/install -c -m 644 'logo5.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo5.png' > /usr/bin/install -c -m 644 'logo_ssc5.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc5.png' > /usr/bin/install -c -m 644 'logo6.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo6.png' > /usr/bin/install -c -m 644 'logo_ssc6.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc6.png' > /usr/bin/install -c -m 644 'logo7.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo7.png' > /usr/bin/install -c -m 644 'logo_ssc7.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc7.png' > /usr/bin/install -c -m 644 'logo8.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo8.png' > /usr/bin/install -c -m 644 'logo_ssc8.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc8.png' > /usr/bin/install -c -m 644 'logo9.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo9.png' > /usr/bin/install -c -m 644 'logo_ssc9.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc9.png' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' >Making install in glam2scan_example_output_files >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples/glam2scan_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2scan_example_output_files" > /usr/bin/install -c -m 644 'glam2scan.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2scan_example_output_files/glam2scan.html' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' >Making install in meme_example_output_files >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples/meme_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files" > /usr/bin/install -c -m 644 'meme.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.xml' > /usr/bin/install -c -m 644 'meme.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.xsl' > /usr/bin/install -c -m 644 'meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.html' > /usr/bin/install -c -m 644 'meme.txt' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.txt' > /usr/bin/install -c -m 644 'logo1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo1.png' > /usr/bin/install -c -m 644 'logo2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo2.png' > /usr/bin/install -c -m 644 'logo3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo3.png' > /usr/bin/install -c -m 644 'logo1.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo1.eps' > /usr/bin/install -c -m 644 'logo2.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo2.eps' > /usr/bin/install -c -m 644 'logo3.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo3.eps' > /usr/bin/install -c -m 644 'logo_ssc1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc1.png' > /usr/bin/install -c -m 644 'logo_ssc2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc2.png' > /usr/bin/install -c -m 644 'logo_ssc3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc3.png' > /usr/bin/install -c -m 644 'logo_ssc1.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc1.eps' > /usr/bin/install -c -m 644 'logo_ssc2.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc2.eps' > /usr/bin/install -c -m 644 'logo_ssc3.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc3.eps' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' >Making install in mast_example_output_files >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples/mast_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/mast_example_output_files" > /usr/bin/install -c -m 644 'mast.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/mast_example_output_files/mast.html' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' >Making install in tomtom_example_output_files >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples/tomtom_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files" > /usr/bin/install -c -m 644 'logo_1_+1.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_1_+1.eps' > /usr/bin/install -c -m 644 'logo_1_+1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_1_+1.png' > /usr/bin/install -c -m 644 'logo_2_+2.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_2_+2.eps' > /usr/bin/install -c -m 644 'logo_2_+2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_2_+2.png' > /usr/bin/install -c -m 644 'logo_3_+3.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_3_+3.eps' > /usr/bin/install -c -m 644 'logo_3_+3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_3_+3.png' > /usr/bin/install -c -m 644 'tomtom.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/tomtom.html' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >make[4]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/examples" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples" > /usr/bin/install -c -m 644 'At.fa' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/At.fa' > /usr/bin/install -c -m 644 'sample-kabat.seq' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-kabat.seq' > /usr/bin/install -c -m 644 'sample-glam2-aln.dna' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-glam2-aln.dna' > /usr/bin/install -c -m 644 'sample-glam2-aln.protein' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-glam2-aln.protein' > /usr/bin/install -c -m 644 'sample-motif.dna' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-motif.dna' > /usr/bin/install -c -m 644 'sample-dna-motif.meme-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-dna-motif.meme-io' > /usr/bin/install -c -m 644 'sample-protein-motif.meme-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-protein-motif.meme-io' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' >Making install in images >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' >make[3]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc/images" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images" > /usr/bin/install -c -m 644 'cbrc_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/cbrc_logo.png' > /usr/bin/install -c -m 644 'fimo_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/fimo_logo.png' > /usr/bin/install -c -m 644 'glam2_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/glam2_logo.png' > /usr/bin/install -c -m 644 'glam2scan_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/glam2scan_logo.png' > /usr/bin/install -c -m 644 'nbcr_logo_trans.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/nbcr_logo_trans.gif' > /usr/bin/install -c -m 644 'ncrr_logo.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/ncrr_logo.gif' > /usr/bin/install -c -m 644 'schematic.fig' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/schematic.fig' > /usr/bin/install -c -m 644 'schematic.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/schematic.png' > /usr/bin/install -c -m 644 'sdsc_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/sdsc_logo.png' > /usr/bin/install -c -m 644 'tomtom_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/tomtom_logo.png' > /usr/bin/install -c -m 644 'uq_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/uq_logo.png' > /usr/bin/install -c -m 644 'ucsd_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/ucsd_logo.png' > /usr/bin/install -c -m 644 'UWlogo150p.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/UWlogo150p.gif' > /usr/bin/install -c -m 644 'webserver_schema.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/webserver_schema.png' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' >Making install in . >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >make[3]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/doc" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc" > /usr/bin/install -c -m 644 'alphabets.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/alphabets.html' > /usr/bin/install -c -m 644 'authors.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/authors.html' > /usr/bin/install -c -m 644 'bfile-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/bfile-format.html' > /usr/bin/install -c -m 644 'cite.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/cite.html' > /usr/bin/install -c -m 644 'clustalw2fasta.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/clustalw2fasta.html' > /usr/bin/install -c -m 644 'clustalw-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/clustalw-format.html' > /usr/bin/install -c -m 644 'copyright.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/copyright.html' > /usr/bin/install -c -m 644 'fasta-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fasta-format.html' > /usr/bin/install -c -m 644 'glam2.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2.css' > /usr/bin/install -c -m 644 'glam2format_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2format_man.html' > /usr/bin/install -c -m 644 'glam2mask_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2mask_man.html' > /usr/bin/install -c -m 644 'glam2scan_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2scan_man.html' > /usr/bin/install -c -m 644 'glam2_alphabet.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_alphabet.html' > /usr/bin/install -c -m 644 'glam2_dirichlet.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_dirichlet.html' > /usr/bin/install -c -m 644 'glam2_install.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_install.html' > /usr/bin/install -c -m 644 'glam2_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_man.html' > /usr/bin/install -c -m 644 'glam2-template-header.js' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2-template-header.js' > /usr/bin/install -c -m 644 'GLAM2_method.pdf' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/GLAM2_method.pdf' > /usr/bin/install -c -m 644 'glam2_ref.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_ref.html' > /usr/bin/install -c -m 644 'glam2_tut.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_tut.html' > /usr/bin/install -c -m 644 'install.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/install.html' > /usr/bin/install -c -m 644 'lipo.fasta' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.fasta' > /usr/bin/install -c -m 644 'lipo.linear.all.mhmms' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.linear.all.mhmms' > /usr/bin/install -c -m 644 'lipo.linear.mhmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.linear.mhmm' > /usr/bin/install -c -m 644 'lipo.meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.meme.html' > /usr/bin/install -c -m 644 'lipo.meme.stripped.txt' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.meme.stripped.txt' > /usr/bin/install -c -m 644 'mast.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mast.html' > /usr/bin/install -c -m 644 'mcast.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mcast.html' > /usr/bin/install -c -m 644 'meme.dtd' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme.dtd' > /usr/bin/install -c -m 644 'meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme.html' > /usr/bin/install -c -m 644 'meme-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-format.html' > /usr/bin/install -c -m 644 'meme-install.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-install.html' > /usr/bin/install -c -m 644 'meme-suite-logo.js' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-suite-logo.js' > /usr/bin/install -c -m 644 'meme-suite.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-suite.css' > /usr/bin/install -c -m 644 'metameme.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/metameme.css' > /usr/bin/install -c -m 644 'meta-meme.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meta-meme.gif' > /usr/bin/install -c -m 644 'mhmm-output.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmm-output.html' > /usr/bin/install -c -m 644 'mhmmscan.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmmscan.html' > /usr/bin/install -c -m 644 'overview.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/overview.html' > /usr/bin/install -c -m 644 'purge.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/purge.html' > /usr/bin/install -c -m 644 'release-notes.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/release-notes.html' > /usr/bin/install -c -m 644 'transfac2meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/transfac2meme.html' > /usr/bin/install -c -m 644 'sdsc.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/sdsc.gif' > /usr/bin/install -c -m 644 'select-star-species.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/select-star-species.html' > /usr/bin/install -c -m 644 'standards.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/standards.html' > /usr/bin/install -c -m 644 'tomtom.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/tomtom.html' > /usr/bin/install -c -m 644 'transfac-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/transfac-format.html' > /usr/bin/install -c -m 644 'alphtype.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/alphtype.html' > /usr/bin/install -c -m 644 'ama.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/ama.html' > /usr/bin/install -c -m 644 'beadstring.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/beadstring.html' > /usr/bin/install -c -m 644 'ceqlogo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/ceqlogo.html' > /usr/bin/install -c -m 644 'clustalw2phylip.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/clustalw2phylip.html' > /usr/bin/install -c -m 644 'draw-mhmm.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/draw-mhmm.html' > /usr/bin/install -c -m 644 'fasta-get-markov.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fasta-get-markov.html' > /usr/bin/install -c -m 644 'fasta-io.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fasta-io.html' > /usr/bin/install -c -m 644 'fimo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fimo.html' > /usr/bin/install -c -m 644 'fitevd.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fitevd.html' > /usr/bin/install -c -m 644 'gendb.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/gendb.html' > /usr/bin/install -c -m 644 'getsize.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/getsize.html' > /usr/bin/install -c -m 644 'gomo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/gomo.html' > /usr/bin/install -c -m 644 'log-hmm.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/log-hmm.html' > /usr/bin/install -c -m 644 'meme-io.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-io.html' > /usr/bin/install -c -m 644 'mhmm.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmm.html' > /usr/bin/install -c -m 644 'mhmme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmme.html' > /usr/bin/install -c -m 644 'mhmms.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmms.html' > /usr/bin/install -c -m 644 'miao.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/miao.html' > /usr/bin/install -c -m 644 'modified-template-footer.js' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/modified-template-footer.js' > /usr/bin/install -c -m 644 'motiph.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/motiph.html' > /usr/bin/install -c -m 644 'pmp_bf.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/pmp_bf.html' > /usr/bin/install -c -m 644 'qvalue.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/qvalue.html' > /usr/bin/install -c -m 644 'readseq.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/readseq.html' > /usr/bin/install -c -m 644 'reconcile-tree-alignment.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/reconcile-tree-alignment.html' > /usr/bin/install -c -m 644 'reduce-alignment.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/reduce-alignment.html' > /usr/bin/install -c -m 644 'remove-alignment-gaps.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/remove-alignment-gaps.html' > /usr/bin/install -c -m 644 'shadow.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/shadow.html' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' >Making install in etc >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[2]: Nothing to be done for `install-exec-am'. >test -z "/opt/meme/etc" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc" >test -z "/opt/meme/etc" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc" > /usr/bin/install -c 'fimo.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo.sh' > /usr/bin/install -c -m 644 'beadstring.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/beadstring.xsl' > /usr/bin/install -c 'glam2.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2.sh' > /usr/bin/install -c -m 644 'bkg.jpg' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/bkg.jpg' > /usr/bin/install -c 'glam2scan.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2scan.sh' > /usr/bin/install -c -m 644 'cisml.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml.css' > /usr/bin/install -c 'gomo.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo.sh' > /usr/bin/install -c -m 644 'fimo.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo.xsl' > /usr/bin/install -c 'mast.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast.sh' > /usr/bin/install -c -m 644 'hmm-text.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/hmm-text.xsl' > /usr/bin/install -c 'meme-mast.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme-mast.sh' > /usr/bin/install -c -m 644 'mast.doc' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast.doc' > /usr/bin/install -c -m 644 'mast_upstream_db.list' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast_upstream_db.list' > /usr/bin/install -c -m 644 'meme.doc' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme.doc' > /usr/bin/install -c -m 644 'gomo_db.csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo_db.csv' > /usr/bin/install -c -m 644 'prior1.plib' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/prior1.plib' > /usr/bin/install -c -m 644 'prior30.plib' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/prior30.plib' > /usr/bin/install -c -m 644 'template.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/template.eps' > /usr/bin/install -c -m 644 'template.svg' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/template.svg' > /usr/bin/install -c -m 644 'tomtom_db_names.csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/tomtom_db_names.csv' > /usr/bin/install -c -m 644 'cisml-to-gff.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml-to-gff.xsl' > /usr/bin/install -c -m 644 'cisml-to-html.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml-to-html.xsl' > /usr/bin/install -c -m 644 'cisml-to-text.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml-to-text.xsl' > /usr/bin/install -c -m 644 'fimo-to-gff.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo-to-gff.xsl' > /usr/bin/install -c -m 644 'fimo-to-html.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo-to-html.xsl' > /usr/bin/install -c -m 644 'fimo-to-text.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo-to-text.xsl' > /usr/bin/install -c -m 644 'fimo_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo_config.xml' > /usr/bin/install -c -m 644 'glam2_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2_config.xml' > /usr/bin/install -c -m 644 'glam2scan_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2scan_config.xml' > /usr/bin/install -c -m 644 'gomo_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo_config.xml' > /usr/bin/install -c -m 644 'gomo.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo.xsl' > /usr/bin/install -c -m 644 'mast_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast_config.xml' > /usr/bin/install -c -m 644 'mast_db_names.csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast_db_names.csv' > /usr/bin/install -c -m 644 'meme_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme_config.xml' > /usr/bin/install -c -m 644 'meme.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme.xsl' >make install-data-hook >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[3]: Nothing to be done for `install-data-hook'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' >make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >make[2]: Nothing to be done for `install-exec-am'. >mkdir -p /var/tmp/portage/sci-biology/meme-4.3.0/image//var/log/meme >chmod a+w /var/tmp/portage/sci-biology/meme-4.3.0/image//var/log/meme >make install-data-hook >make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >mkdir -p /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/db >make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >>>> Completed installing meme-4.3.0 into /var/tmp/portage/sci-biology/meme-4.3.0/image/ > >strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment > opt/meme/bin/tree > opt/meme/bin/purge > opt/meme/bin/reconcile-tree-alignment > opt/meme/bin/tomtom > opt/meme/bin/log-hmm > opt/meme/bin/alphtype > opt/meme/bin/reduce-alignment > opt/meme/bin/ama > opt/meme/bin/mast.bin > opt/meme/bin/meme.bin > opt/meme/bin/mhmms > opt/meme/bin/fimo > opt/meme/bin/xsltproc_lite > opt/meme/bin/clustalw2phylip > opt/meme/bin/clustalw2fasta > opt/meme/bin/ceqlogo > opt/meme/bin/fitevd > opt/meme/bin/draw-mhmm > opt/meme/bin/ranksum_test > opt/meme/bin/meme-xml-html > opt/meme/bin/mhmme > opt/meme/bin/getsize > opt/meme/bin/clustalw-io > opt/meme/bin/remove-alignment-gaps > opt/meme/bin/fasta-io > opt/meme/bin/glam2format > opt/meme/bin/dust > opt/meme/bin/meme-io > opt/meme/bin/mhmmscan > opt/meme/bin/glam2scan > opt/meme/bin/gendb > opt/meme/bin/glam2 > opt/meme/bin/mhmm > opt/meme/bin/glam2mask > opt/meme/bin/gomo > opt/meme/bin/beadstring > opt/meme/bin/mhmm-io > opt/meme/bin/shadow > opt/meme/bin/qvalue > opt/meme/bin/readseq > opt/meme/bin/motiph > opt/meme/bin/pmp_bf > [32;01m*[0m Removing /usr/share/doc > [32;01m*[0m Removing /usr/share/info
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