* CPV: sci-biology/meme-4.3.0 * REPO: gentoo * USE: elibc_glibc kernel_linux test userland_GNU x86 >>> Unpacking source... >>> Unpacking meme_4.3.0.tar.gz to /var/tmp/portage/sci-biology/meme-4.3.0/work >>> Source unpacked in /var/tmp/portage/sci-biology/meme-4.3.0/work >>> Preparing source in /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ... * Applying meme-4.0.0-Makefile.am.patch ...  [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' ... * Running aclocal ...  [ ok ] * Running libtoolize --copy --force --install --automake ...  [ ok ] * Running aclocal ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy ...  [ ok ] * Running elibtoolize in: meme_4.3.0/config * Applying portage-2.2.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-2.2.6.patch ... * Running elibtoolize in: meme_4.3.0/src/libxml2 * Applying portage-1.5.10.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-1.5.patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ... * econf: updating meme_4.3.0/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating meme_4.3.0/config/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --prefix=/opt/meme --sysconfdir=/opt/meme/etc --with-logs=/var/log/meme --enable-serial checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of i686-pc-linux-gnu-gcc... gcc3 checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r checking for i686-pc-linux-gnu-objdump... i686-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-pc-linux-gnu-gcc static flag -static works... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make sets $(MAKE)... (cached) yes checking for ld... /usr/i686-pc-linux-gnu/bin/ld checking for sed... (cached) /bin/sed checking for mpicc... /usr/bin/mpicc checking for mail... /usr/bin/mail checking for sendmail... /usr/sbin/sendmail checking for perl... /usr/bin/perl checking for python... /usr/bin/python checking for convert... /usr/bin/convert checking for dot... /usr/bin/dot checking for xml2-config... /usr/bin/xml2-config checking for xslt-config... /usr/bin/xslt-config checking for ant... /usr/bin/ant checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for pid_t... yes checking for size_t... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking return type of signal handlers... void checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for floor... yes checking for getcwd... yes checking for gethostbyname... yes checking for isascii... yes checking for memset... yes checking for pow... yes checking for rint... yes checking for socket... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strdup... yes checking for strspn... yes checking for strstr... yes checking for strlcpy... no checking for MPI_Comm_rank in -lmpi... no checking whether to enable OpenMP multithreading support... no checking for convert... (cached) /usr/bin/convert checking for dot... (cached) /usr/bin/dot configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/examples/Makefile config.status: creating doc/examples/fimo_example_output_files/Makefile config.status: creating doc/examples/glam2_example_output_files/Makefile config.status: creating doc/examples/glam2scan_example_output_files/Makefile config.status: creating doc/examples/mast_example_output_files/Makefile config.status: creating doc/examples/meme_example_output_files/Makefile config.status: creating doc/examples/tomtom_example_output_files/Makefile config.status: creating doc/images/Makefile config.status: creating etc/Makefile config.status: creating src/filters/Makefile config.status: creating src/filters/purge/Makefile config.status: creating src/filters/dust/Makefile config.status: creating scripts/Makefile config.status: creating src/Makefile config.status: creating src/libxml2/Makefile config.status: creating src/libxml2/include/Makefile config.status: creating src/libxml2/include/libxml/Makefile config.status: creating src/libxslt/Makefile config.status: creating src/parallel/Makefile config.status: creating tests/Makefile config.status: creating tests/common/Makefile config.status: creating tests/mast/Makefile config.status: creating tests/meme/Makefile config.status: creating tests/clustalw2fasta/Makefile config.status: creating tests/draw-mhmm/Makefile config.status: creating tests/mhmm/Makefile config.status: creating tests/mhmms/Makefile config.status: creating tests/motiph/Makefile config.status: creating tests/gomo/Makefile config.status: creating tests/tomtom/Makefile config.status: creating tests/scaffold/Makefile config.status: creating tests/qvalue/Makefile config.status: creating tests/web/Makefile config.status: creating website/Makefile config.status: creating website/cgi-bin/Makefile config.status: creating website/html/Makefile config.status: creating website/scripts/Makefile config.status: creating website/images/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ======================== Configuration parameters ======================== Install path: /opt/meme Install UID: Version: 4.3.0 C compiler: i686-pc-linux-gnu-gcc C compiler flags: -DUNIX -D__USE_FIXED_PROTOTYPES__ -O Linker: /usr/i686-pc-linux-gnu/bin/ld Special Libs: -lm MPICC /usr/bin/mpicc MPIINC -DMPI -I/usr/include MPILIBDIR /usr/lib MPIFLAGS -DPARALLEL MPIRUN OpenMP Support: no MEME URL: http://tinderbox/meme MEME WEB DIRECTORY: ${prefix}/web MEME CONTACT: @tinderbox MEME_LOGS: /var/log/meme BLOCKMAKER URL: http://blocks.fhcrc.org/blocks-bin/process_blocks.pl GO-SERVER URL: http://amigo.geneontology.org/cgi-bin/amigo/ PERL: /usr/bin/perl CONVERT: /usr/bin/convert DOT: /usr/bin/dot BUILD LIBXML2: no LIBXML2 compiler flags: -I/usr/include/libxml2 LIBXML2 libs: -lxml2 -lz -lm BUILD LIBXSLT: no LIBXSLT compiler flags: -I/usr/include/libxml2 LIBXSLT libs: -L/usr/lib -lxslt -lxml2 -lz -lm MEME_DB: ${prefix}/db MEME_LOGS: /var/log/meme OPAL URL: no OPAL XML: no Run the following commands to compile, test and install meme: make make test make install >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ... make -j14 make all-recursive make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' Making all in src make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' echo '#define MEME_DIR "/opt/meme"' >dir.h; \ echo '#define ETC_DIR "/opt/meme/etc" ' >> dir.h make all-recursive make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' Making all in filters make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' Making all in purge make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT afnio.o -MD -MP -MF .deps/afnio.Tpo -c -o afnio.o afnio.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT alphabet.o -MD -MP -MF .deps/alphabet.Tpo -c -o alphabet.o alphabet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT block.o -MD -MP -MF .deps/block.Tpo -c -o block.o block.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT dheap.o -MD -MP -MF .deps/dheap.Tpo -c -o dheap.o dheap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gblast.o -MD -MP -MF .deps/gblast.Tpo -c -o gblast.o gblast.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT karlin.o -MD -MP -MF .deps/karlin.Tpo -c -o karlin.o karlin.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mheap.o -MD -MP -MF .deps/mheap.Tpo -c -o mheap.o mheap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mlist.o -MD -MP -MF .deps/mlist.Tpo -c -o mlist.o mlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pairaln.o -MD -MP -MF .deps/pairaln.Tpo -c -o pairaln.o pairaln.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pmain.o -MD -MP -MF .deps/pmain.Tpo -c -o pmain.o pmain.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT purge.o -MD -MP -MF .deps/purge.Tpo -c -o purge.o purge.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT random.o -MD -MP -MF .deps/random.Tpo -c -o random.o random.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT seqset.o -MD -MP -MF .deps/seqset.Tpo -c -o seqset.o seqset.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT sequence.o -MD -MP -MF .deps/sequence.Tpo -c -o sequence.o sequence.c mv -f .deps/random.Tpo .deps/random.Po mv -f .deps/mlist.Tpo .deps/mlist.Po mv -f .deps/afnio.Tpo .deps/afnio.Po mv -f .deps/mheap.Tpo .deps/mheap.Po mv -f .deps/dheap.Tpo .deps/dheap.Po mv -f .deps/pmain.Tpo .deps/pmain.Po mv -f .deps/karlin.Tpo .deps/karlin.Po mv -f .deps/alphabet.Tpo .deps/alphabet.Po mv -f .deps/purge.Tpo .deps/purge.Po mv -f .deps/pairaln.Tpo .deps/pairaln.Po mv -f .deps/gblast.Tpo .deps/gblast.Po mv -f .deps/block.Tpo .deps/block.Po mv -f .deps/seqset.Tpo .deps/seqset.Po mv -f .deps/sequence.Tpo .deps/sequence.Po /bin/sh ../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' Making all in dust make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tust.o -MD -MP -MF .deps/tust.Tpo -c -o tust.o tust.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT dust.o -MD -MP -MF .deps/dust.Tpo -c -o dust.o dust.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT getfa.o -MD -MP -MF .deps/getfa.Tpo -c -o getfa.o getfa.c mv -f .deps/tust.Tpo .deps/tust.Po mv -f .deps/dust.Tpo .deps/dust.Po mv -f .deps/getfa.Tpo .deps/getfa.Po /bin/sh ../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o dust tust.o dust.o getfa.o -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o dust tust.o dust.o getfa.o -lm make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' Making all in libxml2 make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' Making all in libxslt make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' Making all in . make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c -o liblogo_la-ceqlogo.lo `test -f 'ceqlogo.c' || echo './'`ceqlogo.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c -o libcommon_la-array.lo `test -f 'array.c' || echo './'`array.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c -o libcommon_la-background.lo `test -f 'background.c' || echo './'`background.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c -o libcommon_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_alph.lo -MD -MP -MF .deps/libcommon_la-hash_alph.Tpo -c -o libcommon_la-hash_alph.lo `test -f 'hash_alph.c' || echo './'`hash_alph.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c -o libcommon_la-heap.lo `test -f 'heap.c' || echo './'`heap.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c -o libcommon_la-io.lo `test -f 'io.c' || echo './'`io.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-meme-io.lo -MD -MP -MF .deps/libcommon_la-meme-io.Tpo -c -o libcommon_la-meme-io.lo `test -f 'meme-io.c' || echo './'`meme-io.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c -o libcommon_la-matrix.lo `test -f 'matrix.c' || echo './'`matrix.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c -o libcommon_la-motif.lo `test -f 'motif.c' || echo './'`motif.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-psp.lo -MD -MP -MF .deps/libcommon_la-psp.Tpo -c -o libcommon_la-psp.lo `test -f 'psp.c' || echo './'`psp.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c -o libcommon_la-rdb-matrix.lo `test -f 'rdb-matrix.c' || echo './'`rdb-matrix.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c -o libcommon_la-read_sequence.lo `test -f 'read_sequence.c' || echo './'`read_sequence.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_csv.lo -MD -MP -MF .deps/libcommon_la-read_csv.Tpo -c -o libcommon_la-read_csv.lo `test -f 'read_csv.c' || echo './'`read_csv.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c ceqlogo.c -fPIC -DPIC -o .libs/liblogo_la-ceqlogo.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c io.c -fPIC -DPIC -o .libs/libcommon_la-io.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c heap.c -fPIC -DPIC -o .libs/libcommon_la-heap.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c hash_table.c -fPIC -DPIC -o .libs/libcommon_la-hash_table.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_alph.lo -MD -MP -MF .deps/libcommon_la-hash_alph.Tpo -c hash_alph.c -fPIC -DPIC -o .libs/libcommon_la-hash_alph.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-psp.lo -MD -MP -MF .deps/libcommon_la-psp.Tpo -c psp.c -fPIC -DPIC -o .libs/libcommon_la-psp.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -fPIC -DPIC -o .libs/libcommon_la-matrix.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-meme-io.lo -MD -MP -MF .deps/libcommon_la-meme-io.Tpo -c meme-io.c -fPIC -DPIC -o .libs/libcommon_la-meme-io.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -fPIC -DPIC -o .libs/libcommon_la-rdb-matrix.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -fPIC -DPIC -o .libs/libcommon_la-motif.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c background.c -fPIC -DPIC -o .libs/libcommon_la-background.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c array.c -fPIC -DPIC -o .libs/libcommon_la-array.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -fPIC -DPIC -o .libs/libcommon_la-read_sequence.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_csv.lo -MD -MP -MF .deps/libcommon_la-read_csv.Tpo -c read_csv.c -fPIC -DPIC -o .libs/libcommon_la-read_csv.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c heap.c -o libcommon_la-heap.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c io.c -o libcommon_la-io.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_alph.lo -MD -MP -MF .deps/libcommon_la-hash_alph.Tpo -c hash_alph.c -o libcommon_la-hash_alph.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -o libcommon_la-read_sequence.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_csv.lo -MD -MP -MF .deps/libcommon_la-read_csv.Tpo -c read_csv.c -o libcommon_la-read_csv.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -o libcommon_la-motif.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c hash_table.c -o libcommon_la-hash_table.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-psp.lo -MD -MP -MF .deps/libcommon_la-psp.Tpo -c psp.c -o libcommon_la-psp.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -o libcommon_la-rdb-matrix.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c background.c -o libcommon_la-background.o >/dev/null 2>&1 mv -f .deps/libcommon_la-read_sequence.Tpo .deps/libcommon_la-read_sequence.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c -o libcommon_la-read_tamo.lo `test -f 'read_tamo.c' || echo './'`read_tamo.c mv -f .deps/libcommon_la-heap.Tpo .deps/libcommon_la-heap.Plo mv -f .deps/libcommon_la-hash_table.Tpo .deps/libcommon_la-hash_table.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c array.c -o libcommon_la-array.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c -o libcommon_la-utils.lo `test -f 'utils.c' || echo './'`utils.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c -o libcommon_la-xml-util.lo `test -f 'xml-util.c' || echo './'`xml-util.c mv -f .deps/libcommon_la-io.Tpo .deps/libcommon_la-io.Plo mv -f .deps/libcommon_la-read_csv.Tpo .deps/libcommon_la-read_csv.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c -o libcommon_la-zscore.lo `test -f 'zscore.c' || echo './'`zscore.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c -o libmetameme_la-ama_scan.lo `test -f 'ama_scan.c' || echo './'`ama_scan.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-meme-io.lo -MD -MP -MF .deps/libcommon_la-meme-io.Tpo -c meme-io.c -o libcommon_la-meme-io.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -o libcommon_la-matrix.o >/dev/null 2>&1 mv -f .deps/libcommon_la-hash_alph.Tpo .deps/libcommon_la-hash_alph.Plo mv -f .deps/libcommon_la-motif.Tpo .deps/libcommon_la-motif.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c read_tamo.c -fPIC -DPIC -o .libs/libcommon_la-read_tamo.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c zscore.c -fPIC -DPIC -o .libs/libcommon_la-zscore.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c -o libmetameme_la-alignment.lo `test -f 'alignment.c' || echo './'`alignment.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c -o libmetameme_la-alphabet.lo `test -f 'alphabet.c' || echo './'`alphabet.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libcommon_la-utils.o mv -f .deps/libcommon_la-rdb-matrix.Tpo .deps/libcommon_la-rdb-matrix.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c -o libmetameme_la-array-list.lo `test -f 'array-list.c' || echo './'`array-list.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -fPIC -DPIC -o .libs/libcommon_la-xml-util.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c ama_scan.c -fPIC -DPIC -o .libs/libmetameme_la-ama_scan.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c alignment.c -fPIC -DPIC -o .libs/libmetameme_la-alignment.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c alphabet.c -fPIC -DPIC -o .libs/libmetameme_la-alphabet.o mv -f .deps/libcommon_la-psp.Tpo .deps/libcommon_la-psp.Plo ceqlogo.c: In function ‘CL_create2’: ceqlogo.c:188: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result ceqlogo.c: In function ‘F_rmdir’: ceqlogo.c:1068: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result ceqlogo.c: In function ‘F_mkdir’: ceqlogo.c:1076: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c ceqlogo.c -o liblogo_la-ceqlogo.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c -o libmetameme_la-beadstring-xml.lo `test -f 'beadstring-xml.c' || echo './'`beadstring-xml.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c zscore.c -o libcommon_la-zscore.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c array-list.c -fPIC -DPIC -o .libs/libmetameme_la-array-list.o mv -f .deps/libcommon_la-background.Tpo .deps/libcommon_la-background.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c -o libmetameme_la-binary-search.lo `test -f 'binary-search.c' || echo './'`binary-search.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c read_tamo.c -o libcommon_la-read_tamo.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c binary-search.c -fPIC -DPIC -o .libs/libmetameme_la-binary-search.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c beadstring-xml.c -fPIC -DPIC -o .libs/libmetameme_la-beadstring-xml.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c binary-search.c -o libmetameme_la-binary-search.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -o libcommon_la-xml-util.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c ama_scan.c -o libmetameme_la-ama_scan.o >/dev/null 2>&1 utils.c: In function ‘open_command_pipe’: utils.c:255: warning: format not a string literal and no format arguments utils.c: In function ‘date_and_time’: utils.c:676: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1 mv -f .deps/libcommon_la-array.Tpo .deps/libcommon_la-array.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c -o libmetameme_la-build-hmm.lo `test -f 'build-hmm.c' || echo './'`build-hmm.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c alphabet.c -o libmetameme_la-alphabet.o >/dev/null 2>&1 mv -f .deps/libcommon_la-zscore.Tpo .deps/libcommon_la-zscore.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c -o libmetameme_la-cisml.lo `test -f 'cisml.c' || echo './'`cisml.c mv -f .deps/libmetameme_la-binary-search.Tpo .deps/libmetameme_la-binary-search.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c array-list.c -o libmetameme_la-array-list.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c -o libmetameme_la-clustalw-io.lo `test -f 'clustalw-io.c' || echo './'`clustalw-io.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c build-hmm.c -fPIC -DPIC -o .libs/libmetameme_la-build-hmm.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c beadstring-xml.c -o libmetameme_la-beadstring-xml.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c alignment.c -o libmetameme_la-alignment.o >/dev/null 2>&1 mv -f .deps/libcommon_la-meme-io.Tpo .deps/libcommon_la-meme-io.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c -o libmetameme_la-dp.lo `test -f 'dp.c' || echo './'`dp.c mv -f .deps/libcommon_la-matrix.Tpo .deps/libcommon_la-matrix.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c cisml.c -fPIC -DPIC -o .libs/libmetameme_la-cisml.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c clustalw-io.c -fPIC -DPIC -o .libs/libmetameme_la-clustalw-io.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c -o libmetameme_la-evomodel.lo `test -f 'evomodel.c' || echo './'`evomodel.c mv -f .deps/libcommon_la-read_tamo.Tpo .deps/libcommon_la-read_tamo.Plo mv -f .deps/libcommon_la-xml-util.Tpo .deps/libcommon_la-xml-util.Plo mv -f .deps/libmetameme_la-ama_scan.Tpo .deps/libmetameme_la-ama_scan.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c -o libmetameme_la-evomodel_with_loss.lo `test -f 'evomodel_with_loss.c' || echo './'`evomodel_with_loss.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c -o libmetameme_la-fasta-io.lo `test -f 'fasta-io.c' || echo './'`fasta-io.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c -o libmetameme_la-fitevd.lo `test -f 'fitevd.c' || echo './'`fitevd.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c dp.c -fPIC -DPIC -o .libs/libmetameme_la-dp.o mv -f .deps/libmetameme_la-alphabet.Tpo .deps/libmetameme_la-alphabet.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c evomodel.c -fPIC -DPIC -o .libs/libmetameme_la-evomodel.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c -o libmetameme_la-gendb.lo `test -f 'gendb.c' || echo './'`gendb.c mv -f .deps/libcommon_la-utils.Tpo .deps/libcommon_la-utils.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c fasta-io.c -fPIC -DPIC -o .libs/libmetameme_la-fasta-io.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c -o libmetameme_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c evomodel_with_loss.c -fPIC -DPIC -o .libs/libmetameme_la-evomodel_with_loss.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c fitevd.c -fPIC -DPIC -o .libs/libmetameme_la-fitevd.o mv -f .deps/libmetameme_la-array-list.Tpo .deps/libmetameme_la-array-list.Plo mv -f .deps/libmetameme_la-beadstring-xml.Tpo .deps/libmetameme_la-beadstring-xml.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c -o libmetameme_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c -o libmetameme_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c gendb.c -fPIC -DPIC -o .libs/libmetameme_la-gendb.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c karlin.c -fPIC -DPIC -o .libs/libmetameme_la-karlin.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c clustalw-io.c -o libmetameme_la-clustalw-io.o >/dev/null 2>&1 mv -f .deps/liblogo_la-ceqlogo.Tpo .deps/liblogo_la-ceqlogo.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c -o libmetameme_la-match.lo `test -f 'match.c' || echo './'`match.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c linked-list.c -fPIC -DPIC -o .libs/libmetameme_la-linked-list.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c build-hmm.c -o libmetameme_la-build-hmm.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c log-hmm.c -fPIC -DPIC -o .libs/libmetameme_la-log-hmm.o mv -f .deps/libmetameme_la-alignment.Tpo .deps/libmetameme_la-alignment.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c -o libmetameme_la-merger.lo `test -f 'merger.c' || echo './'`merger.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c fasta-io.c -o libmetameme_la-fasta-io.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c dp.c -o libmetameme_la-dp.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c match.c -fPIC -DPIC -o .libs/libmetameme_la-match.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c evomodel_with_loss.c -o libmetameme_la-evomodel_with_loss.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c karlin.c -o libmetameme_la-karlin.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c merger.c -fPIC -DPIC -o .libs/libmetameme_la-merger.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c linked-list.c -o libmetameme_la-linked-list.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c evomodel.c -o libmetameme_la-evomodel.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c log-hmm.c -o libmetameme_la-log-hmm.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c match.c -o libmetameme_la-match.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c gendb.c -o libmetameme_la-gendb.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-clustalw-io.Tpo .deps/libmetameme_la-clustalw-io.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c -o libmetameme_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c merger.c -o libmetameme_la-merger.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-evomodel_with_loss.Tpo .deps/libmetameme_la-evomodel_with_loss.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c fitevd.c -o libmetameme_la-fitevd.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-karlin.Tpo .deps/libmetameme_la-karlin.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c -o libmetameme_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c metameme.c -fPIC -DPIC -o .libs/libmetameme_la-metameme.o mv -f .deps/libmetameme_la-fasta-io.Tpo .deps/libmetameme_la-fasta-io.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c -o libmetameme_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c -o libmetameme_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c mv -f .deps/libmetameme_la-build-hmm.Tpo .deps/libmetameme_la-build-hmm.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c -o libmetameme_la-motiph-scoring.lo `test -f 'motiph-scoring.c' || echo './'`motiph-scoring.c mv -f .deps/libmetameme_la-linked-list.Tpo .deps/libmetameme_la-linked-list.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c -o libmetameme_la-object-list.lo `test -f 'object-list.c' || echo './'`object-list.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-mhmm.o mv -f .deps/libmetameme_la-dp.Tpo .deps/libmetameme_la-dp.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c -o libmetameme_la-order.lo `test -f 'order.c' || echo './'`order.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c mhmm-state.c -fPIC -DPIC -o .libs/libmetameme_la-mhmm-state.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c mhmms.c -fPIC -DPIC -o .libs/libmetameme_la-mhmms.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c motiph-scoring.c -fPIC -DPIC -o .libs/libmetameme_la-motiph-scoring.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c object-list.c -fPIC -DPIC -o .libs/libmetameme_la-object-list.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c metameme.c -o libmetameme_la-metameme.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-match.Tpo .deps/libmetameme_la-match.Plo mv -f .deps/libmetameme_la-log-hmm.Tpo .deps/libmetameme_la-log-hmm.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c -o libmetameme_la-params.lo `test -f 'params.c' || echo './'`params.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c order.c -fPIC -DPIC -o .libs/libmetameme_la-order.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c -o libmetameme_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c mv -f .deps/libmetameme_la-merger.Tpo .deps/libmetameme_la-merger.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c -o libmetameme_la-qsort.lo `test -f 'qsort.c' || echo './'`qsort.c mv -f .deps/libmetameme_la-gendb.Tpo .deps/libmetameme_la-gendb.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c params.c -fPIC -DPIC -o .libs/libmetameme_la-params.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c pssm.c -fPIC -DPIC -o .libs/libmetameme_la-pssm.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c cisml.c -o libmetameme_la-cisml.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c -o libmetameme_la-qvalue.lo `test -f 'qvalue.c' || echo './'`qvalue.c mv -f .deps/libmetameme_la-evomodel.Tpo .deps/libmetameme_la-evomodel.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c -o libmetameme_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c qsort.c -fPIC -DPIC -o .libs/libmetameme_la-qsort.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c mhmm-state.c -o libmetameme_la-mhmm-state.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-metameme.Tpo .deps/libmetameme_la-metameme.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c qvalue.c -fPIC -DPIC -o .libs/libmetameme_la-qvalue.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c -o libmetameme_la-read-mhmm.lo `test -f 'read-mhmm.c' || echo './'`read-mhmm.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c mhmm.c -o libmetameme_la-mhmm.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c ranksum_test.c -fPIC -DPIC -o .libs/libmetameme_la-ranksum_test.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c params.c -o libmetameme_la-params.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c qsort.c -o libmetameme_la-qsort.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c object-list.c -o libmetameme_la-object-list.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c order.c -o libmetameme_la-order.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c read-mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-read-mhmm.o mv -f .deps/libmetameme_la-fitevd.Tpo .deps/libmetameme_la-fitevd.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c -o libmetameme_la-red-black-tree.lo `test -f 'red-black-tree.c' || echo './'`red-black-tree.c mv -f .deps/libmetameme_la-mhmm-state.Tpo .deps/libmetameme_la-mhmm-state.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c mhmms.c -o libmetameme_la-mhmms.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c -o libmetameme_la-scored-sites.lo `test -f 'scored-sites.c' || echo './'`scored-sites.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c qvalue.c -o libmetameme_la-qvalue.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c red-black-tree.c -fPIC -DPIC -o .libs/libmetameme_la-red-black-tree.o mv -f .deps/libmetameme_la-qsort.Tpo .deps/libmetameme_la-qsort.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c -o libmetameme_la-seq.lo `test -f 'seq.c' || echo './'`seq.c mv -f .deps/libmetameme_la-params.Tpo .deps/libmetameme_la-params.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c motiph-scoring.c -o libmetameme_la-motiph-scoring.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-object-list.Tpo .deps/libmetameme_la-object-list.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c -o libmetameme_la-simple-getopt.lo `test -f 'simple-getopt.c' || echo './'`simple-getopt.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c -o libmetameme_la-string-list.lo `test -f 'string-list.c' || echo './'`string-list.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c ranksum_test.c -o libmetameme_la-ranksum_test.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c seq.c -fPIC -DPIC -o .libs/libmetameme_la-seq.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c scored-sites.c -fPIC -DPIC -o .libs/libmetameme_la-scored-sites.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c pssm.c -o libmetameme_la-pssm.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-order.Tpo .deps/libmetameme_la-order.Plo mv -f .deps/libmetameme_la-mhmm.Tpo .deps/libmetameme_la-mhmm.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c simple-getopt.c -fPIC -DPIC -o .libs/libmetameme_la-simple-getopt.o /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c -o libmetameme_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c -o libmetameme_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c string-list.c -fPIC -DPIC -o .libs/libmetameme_la-string-list.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c substmatrix-table.c -fPIC -DPIC -o .libs/libmetameme_la-substmatrix-table.o read-mhmm.c: In function ‘read_mhmm_state’: read-mhmm.c:75: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result read-mhmm.c: In function ‘read_mhmm’: read-mhmm.c:743: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result mv -f .deps/libmetameme_la-qvalue.Tpo .deps/libmetameme_la-qvalue.Plo libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c read-mhmm.c -o libmetameme_la-read-mhmm.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c -o libmetameme_la-tomtom.lo `test -f 'tomtom.c' || echo './'`tomtom.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c subst-matrix.c -fPIC -DPIC -o .libs/libmetameme_la-subst-matrix.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c simple-getopt.c -o libmetameme_la-simple-getopt.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-ranksum_test.Tpo .deps/libmetameme_la-ranksum_test.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c -o libmetameme_la-tree.lo `test -f 'tree.c' || echo './'`tree.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c seq.c -o libmetameme_la-seq.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c red-black-tree.c -o libmetameme_la-red-black-tree.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c scored-sites.c -o libmetameme_la-scored-sites.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c tomtom.c -fPIC -DPIC -o .libs/libmetameme_la-tomtom.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c substmatrix-table.c -o libmetameme_la-substmatrix-table.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c tree.c -fPIC -DPIC -o .libs/libmetameme_la-tree.o mv -f .deps/libmetameme_la-motiph-scoring.Tpo .deps/libmetameme_la-motiph-scoring.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c -o libmetameme_la-utils.lo `test -f 'utils.c' || echo './'`utils.c mv -f .deps/libmetameme_la-simple-getopt.Tpo .deps/libmetameme_la-simple-getopt.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c -o libmetameme_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c string-list.c -o libmetameme_la-string-list.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-pssm.Tpo .deps/libmetameme_la-pssm.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT alphtype.o -MD -MP -MF .deps/alphtype.Tpo -c -o alphtype.o alphtype.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c subst-matrix.c -o libmetameme_la-subst-matrix.o >/dev/null 2>&1 libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libmetameme_la-utils.o libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c write-mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-write-mhmm.o mv -f .deps/libmetameme_la-read-mhmm.Tpo .deps/libmetameme_la-read-mhmm.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ama-ama.o -MD -MP -MF .deps/ama-ama.Tpo -c -o ama-ama.o `test -f 'ama.c' || echo './'`ama.c mv -f .deps/libmetameme_la-mhmms.Tpo .deps/libmetameme_la-mhmms.Plo mv -f .deps/libmetameme_la-cisml.Tpo .deps/libmetameme_la-cisml.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT beadstring-beadstring.o -MD -MP -MF .deps/beadstring-beadstring.Tpo -c -o beadstring-beadstring.o `test -f 'beadstring.c' || echo './'`beadstring.c mv -f .deps/libmetameme_la-seq.Tpo .deps/libmetameme_la-seq.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ceqlogo-ceqlogo.o -MD -MP -MF .deps/ceqlogo-ceqlogo.Tpo -c -o ceqlogo-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c mv -f .deps/libmetameme_la-red-black-tree.Tpo .deps/libmetameme_la-red-black-tree.Plo mv -f .deps/libmetameme_la-scored-sites.Tpo .deps/libmetameme_la-scored-sites.Plo mv -f .deps/libmetameme_la-substmatrix-table.Tpo .deps/libmetameme_la-substmatrix-table.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw_io-clustalw-io.o -MD -MP -MF .deps/clustalw_io-clustalw-io.Tpo -c -o clustalw_io-clustalw-io.o `test -f 'clustalw-io.c' || echo './'`clustalw-io.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw2fasta-clustalw2fasta.o -MD -MP -MF .deps/clustalw2fasta-clustalw2fasta.Tpo -c -o clustalw2fasta-clustalw2fasta.o `test -f 'clustalw2fasta.c' || echo './'`clustalw2fasta.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw2phylip-clustalw2phylip.o -MD -MP -MF .deps/clustalw2phylip-clustalw2phylip.Tpo -c -o clustalw2phylip-clustalw2phylip.o `test -f 'clustalw2phylip.c' || echo './'`clustalw2phylip.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT draw_mhmm-draw-mhmm.o -MD -MP -MF .deps/draw_mhmm-draw-mhmm.Tpo -c -o draw_mhmm-draw-mhmm.o `test -f 'draw-mhmm.c' || echo './'`draw-mhmm.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c tomtom.c -o libmetameme_la-tomtom.o >/dev/null 2>&1 mv -f .deps/alphtype.Tpo .deps/alphtype.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fasta_io-fasta-io.o -MD -MP -MF .deps/fasta_io-fasta-io.Tpo -c -o fasta_io-fasta-io.o `test -f 'fasta-io.c' || echo './'`fasta-io.c libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c write-mhmm.c -o libmetameme_la-write-mhmm.o >/dev/null 2>&1 mv -f .deps/libmetameme_la-subst-matrix.Tpo .deps/libmetameme_la-subst-matrix.Plo tree.c: In function ‘read_node’: tree.c:509: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result tree.c:540: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result tree.c: In function ‘read_tree’: tree.c:571: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c tree.c -o libmetameme_la-tree.o >/dev/null 2>&1 i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fimo-fimo.o -MD -MP -MF .deps/fimo-fimo.Tpo -c -o fimo-fimo.o `test -f 'fimo.c' || echo './'`fimo.c clustalw2fasta.c: In function ‘main’: clustalw2fasta.c:106: warning: format not a string literal and no format arguments mv -f .deps/clustalw2fasta-clustalw2fasta.Tpo .deps/clustalw2fasta-clustalw2fasta.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fitevd-fitevd.o -MD -MP -MF .deps/fitevd-fitevd.Tpo -c -o fitevd-fitevd.o `test -f 'fitevd.c' || echo './'`fitevd.c mv -f .deps/ama-ama.Tpo .deps/ama-ama.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gendb-gendb.o -MD -MP -MF .deps/gendb-gendb.Tpo -c -o gendb-gendb.o `test -f 'gendb.c' || echo './'`gendb.c draw-mhmm.c: In function ‘main’: draw-mhmm.c:449: warning: format not a string literal and no format arguments mv -f .deps/libmetameme_la-string-list.Tpo .deps/libmetameme_la-string-list.Plo utils.c: In function ‘open_command_pipe’: utils.c:255: warning: format not a string literal and no format arguments utils.c: In function ‘date_and_time’: utils.c:676: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result libtool: compile: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c utils.c -o libmetameme_la-utils.o >/dev/null 2>&1 mv -f .deps/clustalw_io-clustalw-io.Tpo .deps/clustalw_io-clustalw-io.Po fasta-io.c: In function ‘main’: fasta-io.c:382: warning: format not a string literal and no format arguments mv -f .deps/draw_mhmm-draw-mhmm.Tpo .deps/draw_mhmm-draw-mhmm.Po mv -f .deps/fasta_io-fasta-io.Tpo .deps/fasta_io-fasta-io.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT getsize.o -MD -MP -MF .deps/getsize.Tpo -c -o getsize.o getsize.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_alphabet.o -MD -MP -MF .deps/glam2-glam2_alphabet.Tpo -c -o glam2-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_args.o -MD -MP -MF .deps/glam2-glam2_args.Tpo -c -o glam2-glam2_args.o `test -f 'glam2_args.c' || echo './'`glam2_args.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_column_sample.o -MD -MP -MF .deps/glam2-glam2_column_sample.Tpo -c -o glam2-glam2_column_sample.o `test -f 'glam2_column_sample.c' || echo './'`glam2_column_sample.c mv -f .deps/libmetameme_la-tomtom.Tpo .deps/libmetameme_la-tomtom.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_dirichlet.o -MD -MP -MF .deps/glam2-glam2_dirichlet.Tpo -c -o glam2-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c beadstring.c: In function ‘process_command_line’: beadstring.c:1091: warning: format not a string literal and no format arguments beadstring.c:1102: warning: format not a string literal and no format arguments mv -f .deps/beadstring-beadstring.Tpo .deps/beadstring-beadstring.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_dna_prior.o -MD -MP -MF .deps/glam2-glam2_dna_prior.Tpo -c -o glam2-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c mv -f .deps/libmetameme_la-write-mhmm.Tpo .deps/libmetameme_la-write-mhmm.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_fasta.o -MD -MP -MF .deps/glam2-glam2_fasta.Tpo -c -o glam2-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/libmetameme_la-tree.Tpo .deps/libmetameme_la-tree.Plo glam2_alphabet.c: In function ‘alphabet_read’: glam2_alphabet.c:66: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result glam2_alphabet.c:77: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result mv -f .deps/clustalw2phylip-clustalw2phylip.Tpo .deps/clustalw2phylip-clustalw2phylip.Po mv -f .deps/glam2-glam2_alphabet.Tpo .deps/glam2-glam2_alphabet.Po mv -f .deps/glam2-glam2_args.Tpo .deps/glam2-glam2_args.Po mv -f .deps/glam2-glam2_dna_prior.Tpo .deps/glam2-glam2_dna_prior.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_glam2.o -MD -MP -MF .deps/glam2-glam2_glam2.Tpo -c -o glam2-glam2_glam2.o `test -f 'glam2_glam2.c' || echo './'`glam2_glam2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_glam2_aln.o -MD -MP -MF .deps/glam2-glam2_glam2_aln.Tpo -c -o glam2-glam2_glam2_aln.o `test -f 'glam2_glam2_aln.c' || echo './'`glam2_glam2_aln.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_init.o -MD -MP -MF .deps/glam2-glam2_init.Tpo -c -o glam2-glam2_init.o `test -f 'glam2_init.c' || echo './'`glam2_init.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_output.o -MD -MP -MF .deps/glam2-glam2_output.Tpo -c -o glam2-glam2_output.o `test -f 'glam2_output.c' || echo './'`glam2_output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2-glam2_recode3_20comp.Tpo -c -o glam2-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c ceqlogo.c: In function ‘CL_create2’: ceqlogo.c:188: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result ceqlogo.c: In function ‘F_rmdir’: ceqlogo.c:1068: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result ceqlogo.c: In function ‘F_mkdir’: ceqlogo.c:1076: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result mv -f .deps/ceqlogo-ceqlogo.Tpo .deps/ceqlogo-ceqlogo.Po fimo.c: In function ‘process_command_line’: fimo.c:281: warning: format not a string literal and no format arguments mv -f .deps/fimo-fimo.Tpo .deps/fimo-fimo.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_site_sample.o -MD -MP -MF .deps/glam2-glam2_site_sample.Tpo -c -o glam2-glam2_site_sample.o `test -f 'glam2_site_sample.c' || echo './'`glam2_site_sample.c mv -f .deps/libmetameme_la-utils.Tpo .deps/libmetameme_la-utils.Plo i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_util.o -MD -MP -MF .deps/glam2-glam2_util.Tpo -c -o glam2-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-utils.o -MD -MP -MF .deps/glam2-utils.Tpo -c -o glam2-utils.o `test -f 'utils.c' || echo './'`utils.c glam2_dirichlet.c: In function ‘dmix_read’: glam2_dirichlet.c:282: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result mv -f .deps/glam2-glam2_dirichlet.Tpo .deps/glam2-glam2_dirichlet.Po gendb.c: In function ‘main’: gendb.c:419: warning: format not a string literal and no format arguments mv -f .deps/gendb-gendb.Tpo .deps/gendb-gendb.Po mv -f .deps/getsize.Tpo .deps/getsize.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-matrix.o -MD -MP -MF .deps/glam2-matrix.Tpo -c -o glam2-matrix.o `test -f 'matrix.c' || echo './'`matrix.c mv -f .deps/glam2-glam2_column_sample.Tpo .deps/glam2-glam2_column_sample.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-array.o -MD -MP -MF .deps/glam2-array.Tpo -c -o glam2-array.o `test -f 'array.c' || echo './'`array.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-io.o -MD -MP -MF .deps/glam2-io.Tpo -c -o glam2-io.o `test -f 'io.c' || echo './'`io.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-ceqlogo.o -MD -MP -MF .deps/glam2-ceqlogo.Tpo -c -o glam2-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c mv -f .deps/glam2-glam2_recode3_20comp.Tpo .deps/glam2-glam2_recode3_20comp.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_glam2format.o -MD -MP -MF .deps/glam2format-glam2_glam2format.Tpo -c -o glam2format-glam2_glam2format.o `test -f 'glam2_glam2format.c' || echo './'`glam2_glam2format.c mv -f .deps/glam2-glam2_fasta.Tpo .deps/glam2-glam2_fasta.Po glam2_glam2.c: In function ‘main’: glam2_glam2.c:196: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result glam2_glam2.c:199: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result mv -f .deps/glam2-glam2_glam2.Tpo .deps/glam2-glam2_glam2.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_alignment.o -MD -MP -MF .deps/glam2format-glam2_alignment.Tpo -c -o glam2format-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_fasta.o -MD -MP -MF .deps/glam2format-glam2_fasta.Tpo -c -o glam2format-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/glam2-glam2_glam2_aln.Tpo .deps/glam2-glam2_glam2_aln.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_util.o -MD -MP -MF .deps/glam2format-glam2_util.Tpo -c -o glam2format-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c mv -f .deps/glam2-glam2_init.Tpo .deps/glam2-glam2_init.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_glam2mask.o -MD -MP -MF .deps/glam2_glam2mask.Tpo -c -o glam2_glam2mask.o glam2_glam2mask.c mv -f .deps/glam2-io.Tpo .deps/glam2-io.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_alignment.o -MD -MP -MF .deps/glam2_alignment.Tpo -c -o glam2_alignment.o glam2_alignment.c mv -f .deps/glam2-glam2_output.Tpo .deps/glam2-glam2_output.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_fasta.o -MD -MP -MF .deps/glam2_fasta.Tpo -c -o glam2_fasta.o glam2_fasta.c mv -f .deps/glam2format-glam2_alignment.Tpo .deps/glam2format-glam2_alignment.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_util.o -MD -MP -MF .deps/glam2_util.Tpo -c -o glam2_util.o glam2_util.c mv -f .deps/fitevd-fitevd.Tpo .deps/fitevd-fitevd.Po mv -f .deps/glam2-glam2_util.Tpo .deps/glam2-glam2_util.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_alignment.o -MD -MP -MF .deps/glam2scan-glam2_alignment.Tpo -c -o glam2scan-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c mv -f .deps/glam2-glam2_site_sample.Tpo .deps/glam2-glam2_site_sample.Po mv -f .deps/glam2format-glam2_fasta.Tpo .deps/glam2format-glam2_fasta.Po mv -f .deps/glam2format-glam2_glam2format.Tpo .deps/glam2format-glam2_glam2format.Po mv -f .deps/glam2_alignment.Tpo .deps/glam2_alignment.Po utils.c: In function ‘open_command_pipe’: utils.c:255: warning: format not a string literal and no format arguments utils.c: In function ‘date_and_time’: utils.c:676: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result mv -f .deps/glam2-utils.Tpo .deps/glam2-utils.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_alphabet.o -MD -MP -MF .deps/glam2scan-glam2_alphabet.Tpo -c -o glam2scan-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c mv -f .deps/glam2_glam2mask.Tpo .deps/glam2_glam2mask.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_dna_prior.o -MD -MP -MF .deps/glam2scan-glam2_dna_prior.Tpo -c -o glam2scan-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_fasta.o -MD -MP -MF .deps/glam2scan-glam2_fasta.Tpo -c -o glam2scan-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/glam2-array.Tpo .deps/glam2-array.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_dirichlet.o -MD -MP -MF .deps/glam2scan-glam2_dirichlet.Tpo -c -o glam2scan-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_heap.o -MD -MP -MF .deps/glam2scan-glam2_heap.Tpo -c -o glam2scan-glam2_heap.o `test -f 'glam2_heap.c' || echo './'`glam2_heap.c mv -f .deps/glam2_fasta.Tpo .deps/glam2_fasta.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_motif.o -MD -MP -MF .deps/glam2scan-glam2_motif.Tpo -c -o glam2scan-glam2_motif.o `test -f 'glam2_motif.c' || echo './'`glam2_motif.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan.o -MD -MP -MF .deps/glam2scan-glam2_scan.Tpo -c -o glam2scan-glam2_scan.o `test -f 'glam2_scan.c' || echo './'`glam2_scan.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_args.o -MD -MP -MF .deps/glam2scan-glam2_scan_args.Tpo -c -o glam2scan-glam2_scan_args.o `test -f 'glam2_scan_args.c' || echo './'`glam2_scan_args.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_init.o -MD -MP -MF .deps/glam2scan-glam2_scan_init.Tpo -c -o glam2scan-glam2_scan_init.o `test -f 'glam2_scan_init.c' || echo './'`glam2_scan_init.c mv -f .deps/glam2scan-glam2_dna_prior.Tpo .deps/glam2scan-glam2_dna_prior.Po mv -f .deps/glam2scan-glam2_alignment.Tpo .deps/glam2scan-glam2_alignment.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_output.o -MD -MP -MF .deps/glam2scan-glam2_scan_output.Tpo -c -o glam2scan-glam2_scan_output.o `test -f 'glam2_scan_output.c' || echo './'`glam2_scan_output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2scan-glam2_recode3_20comp.Tpo -c -o glam2scan-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c glam2_alphabet.c: In function ‘alphabet_read’: glam2_alphabet.c:66: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result glam2_alphabet.c:77: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result mv -f .deps/glam2scan-glam2_alphabet.Tpo .deps/glam2scan-glam2_alphabet.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_util.o -MD -MP -MF .deps/glam2scan-glam2_util.Tpo -c -o glam2scan-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c mv -f .deps/glam2format-glam2_util.Tpo .deps/glam2format-glam2_util.Po mv -f .deps/glam2-matrix.Tpo .deps/glam2-matrix.Po mv -f .deps/glam2scan-glam2_heap.Tpo .deps/glam2scan-glam2_heap.Po mv -f .deps/glam2_util.Tpo .deps/glam2_util.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-utils.o -MD -MP -MF .deps/glam2scan-utils.Tpo -c -o glam2scan-utils.o `test -f 'utils.c' || echo './'`utils.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-array.o -MD -MP -MF .deps/glam2scan-array.Tpo -c -o glam2scan-array.o `test -f 'array.c' || echo './'`array.c mv -f .deps/glam2scan-glam2_scan_args.Tpo .deps/glam2scan-glam2_scan_args.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gomo-gomo.o -MD -MP -MF .deps/gomo-gomo.Tpo -c -o gomo-gomo.o `test -f 'gomo.c' || echo './'`gomo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT log_hmm-log-hmm.o -MD -MP -MF .deps/log_hmm-log-hmm.Tpo -c -o log_hmm-log-hmm.o `test -f 'log-hmm.c' || echo './'`log-hmm.c mv -f .deps/glam2scan-glam2_motif.Tpo .deps/glam2scan-glam2_motif.Po mv -f .deps/glam2scan-glam2_recode3_20comp.Tpo .deps/glam2scan-glam2_recode3_20comp.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT diagram.o -MD -MP -MF .deps/diagram.Tpo -c -o diagram.o diagram.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT logodds.o -MD -MP -MF .deps/logodds.Tpo -c -o logodds.o logodds.c mv -f .deps/glam2scan-glam2_fasta.Tpo .deps/glam2scan-glam2_fasta.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mast.o -MD -MP -MF .deps/mast.Tpo -c -o mast.o mast.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mast-util.o -MD -MP -MF .deps/mast-util.Tpo -c -o mast-util.o mast-util.c glam2_dirichlet.c: In function ‘dmix_read’: glam2_dirichlet.c:282: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result mv -f .deps/glam2scan-glam2_dirichlet.Tpo .deps/glam2scan-glam2_dirichlet.Po mv -f .deps/glam2scan-glam2_scan_output.Tpo .deps/glam2scan-glam2_scan_output.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT motifs.o -MD -MP -MF .deps/motifs.Tpo -c -o motifs.o motifs.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pssm-distr.o -MD -MP -MF .deps/pssm-distr.Tpo -c -o pssm-distr.o pssm-distr.c mv -f .deps/glam2scan-glam2_scan_init.Tpo .deps/glam2scan-glam2_scan_init.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT regress.o -MD -MP -MF .deps/regress.Tpo -c -o regress.o regress.c mv -f .deps/glam2scan-glam2_scan.Tpo .deps/glam2scan-glam2_scan.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-alphabet.o -MD -MP -MF .deps/meme_bin-alphabet.Tpo -c -o meme_bin-alphabet.o `test -f 'alphabet.c' || echo './'`alphabet.c ceqlogo.c: In function ‘CL_create2’: ceqlogo.c:188: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result ceqlogo.c: In function ‘F_rmdir’: ceqlogo.c:1068: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result ceqlogo.c: In function ‘F_mkdir’: ceqlogo.c:1076: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result mv -f .deps/glam2-ceqlogo.Tpo .deps/glam2-ceqlogo.Po mv -f .deps/motifs.Tpo .deps/motifs.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-array-list.o -MD -MP -MF .deps/meme_bin-array-list.Tpo -c -o meme_bin-array-list.o `test -f 'array-list.c' || echo './'`array-list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-banner.o -MD -MP -MF .deps/meme_bin-banner.Tpo -c -o meme_bin-banner.o `test -f 'banner.c' || echo './'`banner.c mv -f .deps/diagram.Tpo .deps/diagram.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-binary-search.o -MD -MP -MF .deps/meme_bin-binary-search.Tpo -c -o meme_bin-binary-search.o `test -f 'binary-search.c' || echo './'`binary-search.c log-hmm.c: In function ‘main’: log-hmm.c:354: warning: format not a string literal and no format arguments mv -f .deps/glam2scan-glam2_util.Tpo .deps/glam2scan-glam2_util.Po mv -f .deps/log_hmm-log-hmm.Tpo .deps/log_hmm-log-hmm.Po mv -f .deps/pssm-distr.Tpo .deps/pssm-distr.Po mv -f .deps/regress.Tpo .deps/regress.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-branching_search.o -MD -MP -MF .deps/meme_bin-branching_search.Tpo -c -o meme_bin-branching_search.o `test -f 'branching_search.c' || echo './'`branching_search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-calculate_p_y.o -MD -MP -MF .deps/meme_bin-calculate_p_y.Tpo -c -o meme_bin-calculate_p_y.o `test -f 'calculate_p_y.c' || echo './'`calculate_p_y.c utils.c: In function ‘open_command_pipe’: utils.c:255: warning: format not a string literal and no format arguments utils.c: In function ‘date_and_time’: utils.c:676: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result mv -f .deps/glam2scan-utils.Tpo .deps/glam2scan-utils.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-discretize.o -MD -MP -MF .deps/meme_bin-discretize.Tpo -c -o meme_bin-discretize.o `test -f 'discretize.c' || echo './'`discretize.c mv -f .deps/logodds.Tpo .deps/logodds.Po mv -f .deps/meme_bin-alphabet.Tpo .deps/meme_bin-alphabet.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-display.o -MD -MP -MF .deps/meme_bin-display.Tpo -c -o meme_bin-display.o `test -f 'display.c' || echo './'`display.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-dpalign.o -MD -MP -MF .deps/meme_bin-dpalign.Tpo -c -o meme_bin-dpalign.o `test -f 'dpalign.c' || echo './'`dpalign.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-em.o -MD -MP -MF .deps/meme_bin-em.Tpo -c -o meme_bin-em.o `test -f 'em.c' || echo './'`em.c mv -f .deps/meme_bin-binary-search.Tpo .deps/meme_bin-binary-search.Po mv -f .deps/glam2scan-array.Tpo .deps/glam2scan-array.Po mv -f .deps/meme_bin-banner.Tpo .deps/meme_bin-banner.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-hash_table.o -MD -MP -MF .deps/meme_bin-hash_table.Tpo -c -o meme_bin-hash_table.o `test -f 'hash_table.c' || echo './'`hash_table.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-init.o -MD -MP -MF .deps/meme_bin-init.Tpo -c -o meme_bin-init.o `test -f 'init.c' || echo './'`init.c mv -f .deps/meme_bin-array-list.Tpo .deps/meme_bin-array-list.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-justlike.o -MD -MP -MF .deps/meme_bin-justlike.Tpo -c -o meme_bin-justlike.o `test -f 'justlike.c' || echo './'`justlike.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-likelihood.o -MD -MP -MF .deps/meme_bin-likelihood.Tpo -c -o meme_bin-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-linked-list.o -MD -MP -MF .deps/meme_bin-linked-list.Tpo -c -o meme_bin-linked-list.o `test -f 'linked-list.c' || echo './'`linked-list.c mv -f .deps/mast-util.Tpo .deps/mast-util.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-llr.o -MD -MP -MF .deps/meme_bin-llr.Tpo -c -o meme_bin-llr.o `test -f 'llr.c' || echo './'`llr.c gomo.c: In function ‘start_xml_output’: gomo.c:583: warning: format not a string literal and no format arguments gomo.c: In function ‘process_cmd_line’: gomo.c:1573: warning: format not a string literal and no format arguments mv -f .deps/gomo-gomo.Tpo .deps/gomo-gomo.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-logodds.o -MD -MP -MF .deps/meme_bin-logodds.Tpo -c -o meme_bin-logodds.o `test -f 'logodds.c' || echo './'`logodds.c mv -f .deps/meme_bin-discretize.Tpo .deps/meme_bin-discretize.Po mv -f .deps/meme_bin-branching_search.Tpo .deps/meme_bin-branching_search.Po mv -f .deps/meme_bin-hash_table.Tpo .deps/meme_bin-hash_table.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-logs.o -MD -MP -MF .deps/meme_bin-logs.Tpo -c -o meme_bin-logs.o `test -f 'logs.c' || echo './'`logs.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-mast-util.o -MD -MP -MF .deps/meme_bin-mast-util.Tpo -c -o meme_bin-mast-util.o `test -f 'mast-util.c' || echo './'`mast-util.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme.o -MD -MP -MF .deps/meme_bin-meme.Tpo -c -o meme_bin-meme.o `test -f 'meme.c' || echo './'`meme.c mv -f .deps/meme_bin-linked-list.Tpo .deps/meme_bin-linked-list.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme-print-html.o -MD -MP -MF .deps/meme_bin-meme-print-html.Tpo -c -o meme_bin-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c mv -f .deps/meme_bin-justlike.Tpo .deps/meme_bin-justlike.Po mv -f .deps/meme_bin-calculate_p_y.Tpo .deps/meme_bin-calculate_p_y.Po mv -f .deps/meme_bin-em.Tpo .deps/meme_bin-em.Po mv -f .deps/meme_bin-likelihood.Tpo .deps/meme_bin-likelihood.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme_util.o -MD -MP -MF .deps/meme_bin-meme_util.Tpo -c -o meme_bin-meme_util.o `test -f 'meme_util.c' || echo './'`meme_util.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-merger.o -MD -MP -MF .deps/meme_bin-merger.Tpo -c -o meme_bin-merger.o `test -f 'merger.c' || echo './'`merger.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-message.o -MD -MP -MF .deps/meme_bin-message.Tpo -c -o meme_bin-message.o `test -f 'message.c' || echo './'`message.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-motifs.o -MD -MP -MF .deps/meme_bin-motifs.Tpo -c -o meme_bin-motifs.o `test -f 'motifs.c' || echo './'`motifs.c mv -f .deps/meme_bin-logs.Tpo .deps/meme_bin-logs.Po mv -f .deps/meme_bin-meme-print-html.Tpo .deps/meme_bin-meme-print-html.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-mp.o -MD -MP -MF .deps/meme_bin-mp.Tpo -c -o meme_bin-mp.o `test -f 'mp.c' || echo './'`mp.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-oops.o -MD -MP -MF .deps/meme_bin-oops.Tpo -c -o meme_bin-oops.o `test -f 'oops.c' || echo './'`oops.c mv -f .deps/meme_bin-dpalign.Tpo .deps/meme_bin-dpalign.Po mast.c: In function ‘print_mast_results’: mast.c:1165: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result mv -f .deps/mast.Tpo .deps/mast.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-partition.o -MD -MP -MF .deps/meme_bin-partition.Tpo -c -o meme_bin-partition.o `test -f 'partition.c' || echo './'`partition.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-prior.o -MD -MP -MF .deps/meme_bin-prior.Tpo -c -o meme_bin-prior.o `test -f 'prior.c' || echo './'`prior.c mv -f .deps/meme_bin-message.Tpo .deps/meme_bin-message.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-pssm-distr.o -MD -MP -MF .deps/meme_bin-pssm-distr.Tpo -c -o meme_bin-pssm-distr.o `test -f 'pssm-distr.c' || echo './'`pssm-distr.c mv -f .deps/meme_bin-mp.Tpo .deps/meme_bin-mp.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-read_seq_file.o -MD -MP -MF .deps/meme_bin-read_seq_file.Tpo -c -o meme_bin-read_seq_file.o `test -f 'read_seq_file.c' || echo './'`read_seq_file.c mv -f .deps/meme_bin-merger.Tpo .deps/meme_bin-merger.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-red-black-tree.o -MD -MP -MF .deps/meme_bin-red-black-tree.Tpo -c -o meme_bin-red-black-tree.o `test -f 'red-black-tree.c' || echo './'`red-black-tree.c meme.c: In function ‘main’: meme.c:179: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result mv -f .deps/meme_bin-meme.Tpo .deps/meme_bin-meme.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-regress.o -MD -MP -MF .deps/meme_bin-regress.Tpo -c -o meme_bin-regress.o `test -f 'regress.c' || echo './'`regress.c mv -f .deps/meme_bin-mast-util.Tpo .deps/meme_bin-mast-util.Po mv -f .deps/meme_bin-llr.Tpo .deps/meme_bin-llr.Po mv -f .deps/meme_bin-motifs.Tpo .deps/meme_bin-motifs.Po mv -f .deps/meme_bin-partition.Tpo .deps/meme_bin-partition.Po mv -f .deps/meme_bin-pssm-distr.Tpo .deps/meme_bin-pssm-distr.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seed.o -MD -MP -MF .deps/meme_bin-seed.Tpo -c -o meme_bin-seed.o `test -f 'seed.c' || echo './'`seed.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seed_diffs.o -MD -MP -MF .deps/meme_bin-seed_diffs.Tpo -c -o meme_bin-seed_diffs.o `test -f 'seed_diffs.c' || echo './'`seed_diffs.c mv -f .deps/meme_bin-logodds.Tpo .deps/meme_bin-logodds.Po mv -f .deps/meme_bin-display.Tpo .deps/meme_bin-display.Po mv -f .deps/meme_bin-oops.Tpo .deps/meme_bin-oops.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seq2theta.o -MD -MP -MF .deps/meme_bin-seq2theta.Tpo -c -o meme_bin-seq2theta.o `test -f 'seq2theta.c' || echo './'`seq2theta.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-sp_matrix.o -MD -MP -MF .deps/meme_bin-sp_matrix.Tpo -c -o meme_bin-sp_matrix.o `test -f 'sp_matrix.c' || echo './'`sp_matrix.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-starts.o -MD -MP -MF .deps/meme_bin-starts.Tpo -c -o meme_bin-starts.o `test -f 'starts.c' || echo './'`starts.c mv -f .deps/meme_bin-meme_util.Tpo .deps/meme_bin-meme_util.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-string-list.o -MD -MP -MF .deps/meme_bin-string-list.Tpo -c -o meme_bin-string-list.o `test -f 'string-list.c' || echo './'`string-list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-subseq7.o -MD -MP -MF .deps/meme_bin-subseq7.Tpo -c -o meme_bin-subseq7.o `test -f 'subseq7.c' || echo './'`subseq7.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-tcm.o -MD -MP -MF .deps/meme_bin-tcm.Tpo -c -o meme_bin-tcm.o `test -f 'tcm.c' || echo './'`tcm.c prior.c: In function ‘read_PriorLib’: prior.c:82: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:92: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:121: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:124: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:125: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:129: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:130: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:135: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:137: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:142: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:143: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:146: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:147: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result prior.c:150: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result prior.c:156: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result mv -f .deps/meme_bin-prior.Tpo .deps/meme_bin-prior.Po mv -f .deps/meme_bin-regress.Tpo .deps/meme_bin-regress.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-verbosity.o -MD -MP -MF .deps/meme_bin-verbosity.Tpo -c -o meme_bin-verbosity.o `test -f 'verbosity.c' || echo './'`verbosity.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_io-meme-io.o -MD -MP -MF .deps/meme_io-meme-io.Tpo -c -o meme_io-meme-io.o `test -f 'meme-io.c' || echo './'`meme-io.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_xml_html-meme-xml-html.o -MD -MP -MF .deps/meme_xml_html-meme-xml-html.Tpo -c -o meme_xml_html-meme-xml-html.o `test -f 'meme-xml-html.c' || echo './'`meme-xml-html.c mv -f .deps/meme_bin-init.Tpo .deps/meme_bin-init.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_xml_html-meme-print-html.o -MD -MP -MF .deps/meme_xml_html-meme-print-html.Tpo -c -o meme_xml_html-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c mv -f .deps/meme_bin-read_seq_file.Tpo .deps/meme_bin-read_seq_file.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmm-mhmm.o -MD -MP -MF .deps/mhmm-mhmm.Tpo -c -o mhmm-mhmm.o `test -f 'mhmm.c' || echo './'`mhmm.c mv -f .deps/meme_bin-seed.Tpo .deps/meme_bin-seed.Po mv -f .deps/meme_bin-verbosity.Tpo .deps/meme_bin-verbosity.Po mv -f .deps/meme_bin-red-black-tree.Tpo .deps/meme_bin-red-black-tree.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmm_io-mhmm-io.o -MD -MP -MF .deps/mhmm_io-mhmm-io.Tpo -c -o mhmm_io-mhmm-io.o `test -f 'mhmm-io.c' || echo './'`mhmm-io.c mv -f .deps/meme_bin-starts.Tpo .deps/meme_bin-starts.Po mv -f .deps/meme_bin-tcm.Tpo .deps/meme_bin-tcm.Po mv -f .deps/meme_xml_html-meme-print-html.Tpo .deps/meme_xml_html-meme-print-html.Po mv -f .deps/meme_xml_html-meme-xml-html.Tpo .deps/meme_xml_html-meme-xml-html.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmme.o -MD -MP -MF .deps/mhmme.Tpo -c -o mhmme.o mhmme.c mv -f .deps/meme_bin-seed_diffs.Tpo .deps/meme_bin-seed_diffs.Po mv -f .deps/meme_bin-seq2theta.Tpo .deps/meme_bin-seq2theta.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmms-mhmms.o -MD -MP -MF .deps/mhmms-mhmms.Tpo -c -o mhmms-mhmms.o `test -f 'mhmms.c' || echo './'`mhmms.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmmscan-mhmmscan.o -MD -MP -MF .deps/mhmmscan-mhmmscan.Tpo -c -o mhmmscan-mhmmscan.o `test -f 'mhmmscan.c' || echo './'`mhmmscan.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT motiph-motiph.o -MD -MP -MF .deps/motiph-motiph.Tpo -c -o motiph-motiph.o `test -f 'motiph.c' || echo './'`motiph.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pmp_bf-pmp_bf.o -MD -MP -MF .deps/pmp_bf-pmp_bf.Tpo -c -o pmp_bf-pmp_bf.o `test -f 'pmp_bf.c' || echo './'`pmp_bf.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT readseq.o -MD -MP -MF .deps/readseq.Tpo -c -o readseq.o readseq.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ureadseq.o -MD -MP -MF .deps/ureadseq.Tpo -c -o ureadseq.o ureadseq.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT shadow-shadow.o -MD -MP -MF .deps/shadow-shadow.Tpo -c -o shadow-shadow.o `test -f 'shadow.c' || echo './'`shadow.c mv -f .deps/meme_bin-string-list.Tpo .deps/meme_bin-string-list.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tomtom-tomtom.o -MD -MP -MF .deps/tomtom-tomtom.Tpo -c -o tomtom-tomtom.o `test -f 'tomtom.c' || echo './'`tomtom.c mv -f .deps/meme_bin-sp_matrix.Tpo .deps/meme_bin-sp_matrix.Po mv -f .deps/meme_bin-subseq7.Tpo .deps/meme_bin-subseq7.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tree-tree.o -MD -MP -MF .deps/tree-tree.Tpo -c -o tree-tree.o `test -f 'tree.c' || echo './'`tree.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT qvalue-qvalue.o -MD -MP -MF .deps/qvalue-qvalue.Tpo -c -o qvalue-qvalue.o `test -f 'qvalue.c' || echo './'`qvalue.c mhmm-io.c: In function ‘main’: mhmm-io.c:67: warning: format not a string literal and no format arguments mv -f .deps/mhmm_io-mhmm-io.Tpo .deps/mhmm_io-mhmm-io.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ranksum_test-ranksum_test.o -MD -MP -MF .deps/ranksum_test-ranksum_test.Tpo -c -o ranksum_test-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c mhmme.c: In function ‘main’: mhmme.c:171: warning: format not a string literal and no format arguments mv -f .deps/mhmme.Tpo .deps/mhmme.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT reconcile_tree_alignment-reconcile-tree-alignment.o -MD -MP -MF .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo -c -o reconcile_tree_alignment-reconcile-tree-alignment.o `test -f 'reconcile-tree-alignment.c' || echo './'`reconcile-tree-alignment.c mhmm.c: In function ‘main’: mhmm.c:826: warning: format not a string literal and no format arguments mv -f .deps/mhmm-mhmm.Tpo .deps/mhmm-mhmm.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT reduce_alignment-reduce-alignment.o -MD -MP -MF .deps/reduce_alignment-reduce-alignment.Tpo -c -o reduce_alignment-reduce-alignment.o `test -f 'reduce-alignment.c' || echo './'`reduce-alignment.c pmp_bf.c: In function ‘main’: pmp_bf.c:175: warning: format not a string literal and no format arguments mv -f .deps/pmp_bf-pmp_bf.Tpo .deps/pmp_bf-pmp_bf.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT remove_alignment_gaps-remove-alignment-gaps.o -MD -MP -MF .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo -c -o remove_alignment_gaps-remove-alignment-gaps.o `test -f 'remove-alignment-gaps.c' || echo './'`remove-alignment-gaps.c meme-io.c: In function ‘main’: meme-io.c:1581: warning: format not a string literal and no format arguments mv -f .deps/meme_io-meme-io.Tpo .deps/meme_io-meme-io.Po i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT xsltproc_lite-xsltproc_lite.o -MD -MP -MF .deps/xsltproc_lite-xsltproc_lite.Tpo -c -o xsltproc_lite-xsltproc_lite.o `test -f 'xsltproc_lite.c' || echo './'`xsltproc_lite.c motiph.c: In function ‘main’: motiph.c:348: warning: format not a string literal and no format arguments mv -f .deps/motiph-motiph.Tpo .deps/motiph-motiph.Po /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o liblogo.la liblogo_la-ceqlogo.lo -lm mv -f .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo .deps/reconcile_tree_alignment-reconcile-tree-alignment.Po mv -f .deps/reduce_alignment-reduce-alignment.Tpo .deps/reduce_alignment-reduce-alignment.Po /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o libcommon.la libcommon_la-array.lo libcommon_la-background.lo libcommon_la-hash_table.lo libcommon_la-hash_alph.lo libcommon_la-heap.lo libcommon_la-io.lo libcommon_la-meme-io.lo libcommon_la-matrix.lo libcommon_la-motif.lo libcommon_la-psp.lo libcommon_la-rdb-matrix.lo libcommon_la-read_sequence.lo libcommon_la-read_csv.lo libcommon_la-read_tamo.lo libcommon_la-utils.lo libcommon_la-xml-util.lo libcommon_la-zscore.lo -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o glam2-utils.o glam2-matrix.o glam2-array.o glam2-io.o glam2-ceqlogo.o -lm ranksum_test.c: In function ‘main’: ranksum_test.c:644: warning: format not a string literal and no format arguments shadow.c: In function ‘main’: shadow.c:256: warning: format not a string literal and no format arguments mv -f .deps/shadow-shadow.Tpo .deps/shadow-shadow.Po mhmmscan.c: In function ‘main’: mhmmscan.c:593: warning: format not a string literal and no format arguments mv -f .deps/mhmmscan-mhmmscan.Tpo .deps/mhmmscan-mhmmscan.Po mv -f .deps/ranksum_test-ranksum_test.Tpo .deps/ranksum_test-ranksum_test.Po /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o glam2scan-utils.o glam2scan-array.o -lm qvalue.c: In function ‘main’: qvalue.c:564: warning: format not a string literal and no format arguments xsltproc_lite.c: In function ‘main’: xsltproc_lite.c:21: warning: format not a string literal and no format arguments tree.c: In function ‘read_node’: tree.c:509: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result tree.c:540: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result tree.c: In function ‘read_tree’: tree.c:571: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result tree.c: In function ‘main’: tree.c:1271: warning: format not a string literal and no format arguments mv -f .deps/tree-tree.Tpo .deps/tree-tree.Po readseq.c: In function ‘usage’: readseq.c:333: warning: format not a string literal and no format arguments readseq.c: In function ‘chooseFormat’: readseq.c:424: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result readseq.c: In function ‘main’: readseq.c:781: warning: format not a string literal and no format arguments readseq.c:981: warning: format not a string literal and no format arguments readseq.c:774: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result readseq.c:788: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result readseq.c:853: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result readseq.c:899: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result readseq.c:925: warning: ignoring return value of ‘freopen’, declared with attribute warn_unused_result mv -f .deps/readseq.Tpo .deps/readseq.Po mv -f .deps/qvalue-qvalue.Tpo .deps/qvalue-qvalue.Po mv -f .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo .deps/remove_alignment_gaps-remove-alignment-gaps.Po mv -f .deps/xsltproc_lite-xsltproc_lite.Tpo .deps/xsltproc_lite-xsltproc_lite.Po /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm libtool: link: i686-pc-linux-gnu-ar cru .libs/liblogo.a .libs/liblogo_la-ceqlogo.o libtool: link: i686-pc-linux-gnu-ranlib .libs/liblogo.a libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o glam2-utils.o glam2-matrix.o glam2-array.o glam2-io.o glam2-ceqlogo.o -lm libtool: link: ( cd ".libs" && rm -f "liblogo.la" && ln -s "../liblogo.la" "liblogo.la" ) mhmms.c: In function ‘main’: mhmms.c:1486: warning: format not a string literal and no format arguments mv -f .deps/mhmms-mhmms.Tpo .deps/mhmms-mhmms.Po libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o glam2scan-utils.o glam2scan-array.o -lm libtool: link: i686-pc-linux-gnu-ar cru .libs/libcommon.a .libs/libcommon_la-array.o .libs/libcommon_la-background.o .libs/libcommon_la-hash_table.o .libs/libcommon_la-hash_alph.o .libs/libcommon_la-heap.o .libs/libcommon_la-io.o .libs/libcommon_la-meme-io.o .libs/libcommon_la-matrix.o .libs/libcommon_la-motif.o .libs/libcommon_la-psp.o .libs/libcommon_la-rdb-matrix.o .libs/libcommon_la-read_sequence.o .libs/libcommon_la-read_csv.o .libs/libcommon_la-read_tamo.o .libs/libcommon_la-utils.o .libs/libcommon_la-xml-util.o .libs/libcommon_la-zscore.o libtool: link: i686-pc-linux-gnu-ranlib .libs/libcommon.a libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" ) /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o libmetameme.la libmetameme_la-ama_scan.lo libmetameme_la-alignment.lo libmetameme_la-alphabet.lo libmetameme_la-array-list.lo libmetameme_la-beadstring-xml.lo libmetameme_la-binary-search.lo libmetameme_la-build-hmm.lo libmetameme_la-cisml.lo libmetameme_la-clustalw-io.lo libmetameme_la-dp.lo libmetameme_la-evomodel.lo libmetameme_la-evomodel_with_loss.lo libmetameme_la-fasta-io.lo libmetameme_la-fitevd.lo libmetameme_la-gendb.lo libmetameme_la-karlin.lo libmetameme_la-linked-list.lo libmetameme_la-log-hmm.lo libmetameme_la-match.lo libmetameme_la-merger.lo libmetameme_la-metameme.lo libmetameme_la-mhmm.lo libmetameme_la-mhmms.lo libmetameme_la-mhmm-state.lo libmetameme_la-motiph-scoring.lo libmetameme_la-object-list.lo libmetameme_la-order.lo libmetameme_la-params.lo libmetameme_la-pssm.lo libmetameme_la-qsort.lo libmetameme_la-qvalue.lo libmetameme_la-ranksum_test.lo libmetameme_la-read-mhmm.lo libmetameme_la-red-black-tree.lo libmetameme_la-scored-sites.lo libmetameme_la-seq.lo libmetameme_la-simple-getopt.lo libmetameme_la-string-list.lo libmetameme_la-subst-matrix.lo libmetameme_la-substmatrix-table.lo libmetameme_la-tomtom.lo libmetameme_la-tree.lo libmetameme_la-utils.lo libmetameme_la-write-mhmm.lo libcommon.la liblogo.la -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o getsize getsize.o libcommon.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o alphtype alphtype.o libcommon.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o libcommon.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2mask glam2_glam2mask.o glam2_alignment.o glam2_fasta.o glam2_util.o libcommon.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mast.bin diagram.o logodds.o mast.o mast-util.o motifs.o pssm-distr.o regress.o libcommon.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme.bin meme_bin-alphabet.o meme_bin-array-list.o meme_bin-banner.o meme_bin-binary-search.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-hash_table.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-linked-list.o meme_bin-llr.o meme_bin-logodds.o meme_bin-logs.o meme_bin-mast-util.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-merger.o meme_bin-message.o meme_bin-motifs.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-pssm-distr.o meme_bin-read_seq_file.o meme_bin-red-black-tree.o meme_bin-regress.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-string-list.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o liblogo.la libcommon.la -lxml2 -lz -lm -L/usr/lib -lxslt -lxml2 -lz -lm -lm mv -f .deps/tomtom-tomtom.Tpo .deps/tomtom-tomtom.Po libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm In file included from /usr/include/string.h:641, from macros.h:56, from ureadseq.h:17, from ureadseq.c:38: In function ‘strcpy’, inlined from ‘writeSeq’ at ureadseq.c:1765: /usr/include/bits/string3.h:107: warning: call to __builtin___strcpy_chk will always overflow destination buffer mv -f .deps/ureadseq.Tpo .deps/ureadseq.Po /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o readseq readseq.o ureadseq.o -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o getsize getsize.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mast.bin diagram.o logodds.o mast.o mast-util.o motifs.o pssm-distr.o regress.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o alphtype alphtype.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o readseq readseq.o ureadseq.o -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2mask glam2_glam2mask.o glam2_alignment.o glam2_fasta.o glam2_util.o ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme.bin meme_bin-alphabet.o meme_bin-array-list.o meme_bin-banner.o meme_bin-binary-search.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-hash_table.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-linked-list.o meme_bin-llr.o meme_bin-logodds.o meme_bin-logs.o meme_bin-mast-util.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-merger.o meme_bin-message.o meme_bin-motifs.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-pssm-distr.o meme_bin-read_seq_file.o meme_bin-red-black-tree.o meme_bin-regress.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-string-list.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o ./.libs/liblogo.a ./.libs/libcommon.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: (cd .libs/libmetameme.lax/libcommon.a && i686-pc-linux-gnu-ar x "/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/./.libs/libcommon.a") libtool: link: (cd .libs/libmetameme.lax/liblogo.a && i686-pc-linux-gnu-ar x "/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/./.libs/liblogo.a") libtool: link: i686-pc-linux-gnu-ar cru .libs/libmetameme.a .libs/libmetameme_la-ama_scan.o .libs/libmetameme_la-alignment.o .libs/libmetameme_la-alphabet.o .libs/libmetameme_la-array-list.o .libs/libmetameme_la-beadstring-xml.o .libs/libmetameme_la-binary-search.o .libs/libmetameme_la-build-hmm.o .libs/libmetameme_la-cisml.o .libs/libmetameme_la-clustalw-io.o .libs/libmetameme_la-dp.o .libs/libmetameme_la-evomodel.o .libs/libmetameme_la-evomodel_with_loss.o .libs/libmetameme_la-fasta-io.o .libs/libmetameme_la-fitevd.o .libs/libmetameme_la-gendb.o .libs/libmetameme_la-karlin.o .libs/libmetameme_la-linked-list.o .libs/libmetameme_la-log-hmm.o .libs/libmetameme_la-match.o .libs/libmetameme_la-merger.o .libs/libmetameme_la-metameme.o .libs/libmetameme_la-mhmm.o .libs/libmetameme_la-mhmms.o .libs/libmetameme_la-mhmm-state.o .libs/libmetameme_la-motiph-scoring.o .libs/libmetameme_la-object-list.o .libs/libmetameme_la-order.o .libs/libmetameme_la-params.o .libs/libmetameme_la-pssm.o .libs/libmetameme_la-qsort.o .libs/libmetameme_la-qvalue.o .libs/libmetameme_la-ranksum_test.o .libs/libmetameme_la-read-mhmm.o .libs/libmetameme_la-red-black-tree.o .libs/libmetameme_la-scored-sites.o .libs/libmetameme_la-seq.o .libs/libmetameme_la-simple-getopt.o .libs/libmetameme_la-string-list.o .libs/libmetameme_la-subst-matrix.o .libs/libmetameme_la-substmatrix-table.o .libs/libmetameme_la-tomtom.o .libs/libmetameme_la-tree.o .libs/libmetameme_la-utils.o .libs/libmetameme_la-write-mhmm.o .libs/libmetameme.lax/libcommon.a/libcommon_la-hash_alph.o .libs/libmetameme.lax/libcommon.a/libcommon_la-xml-util.o .libs/libmetameme.lax/libcommon.a/libcommon_la-meme-io.o .libs/libmetameme.lax/libcommon.a/libcommon_la-array.o .libs/libmetameme.lax/libcommon.a/libcommon_la-io.o .libs/libmetameme.lax/libcommon.a/libcommon_la-matrix.o .libs/libmetameme.lax/libcommon.a/libcommon_la-heap.o .libs/libmetameme.lax/libcommon.a/libcommon_la-motif.o .libs/libmetameme.lax/libcommon.a/libcommon_la-utils.o .libs/libmetameme.lax/libcommon.a/libcommon_la-psp.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_sequence.o .libs/libmetameme.lax/libcommon.a/libcommon_la-hash_table.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_tamo.o .libs/libmetameme.lax/libcommon.a/libcommon_la-background.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_csv.o .libs/libmetameme.lax/libcommon.a/libcommon_la-zscore.o .libs/libmetameme.lax/libcommon.a/libcommon_la-rdb-matrix.o .libs/libmetameme.lax/liblogo.a/liblogo_la-ceqlogo.o libtool: link: i686-pc-linux-gnu-ranlib .libs/libmetameme.a libtool: link: rm -fr .libs/libmetameme.lax libtool: link: ( cd ".libs" && rm -f "libmetameme.la" && ln -s "../libmetameme.la" "libmetameme.la" ) /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ama ama-ama.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o beadstring beadstring-beadstring.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ceqlogo ceqlogo-ceqlogo.o libmetameme.la liblogo.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw-io clustalw_io-clustalw-io.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o draw-mhmm draw_mhmm-draw-mhmm.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fasta-io fasta_io-fasta-io.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fimo fimo-fimo.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fitevd fitevd-fitevd.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gendb gendb-gendb.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gomo gomo-gomo.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o log-hmm log_hmm-log-hmm.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-io meme_io-meme-io.o libmetameme.la -lxml2 -lz -lm -lm libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ama ama-ama.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw-io clustalw_io-clustalw-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fitevd fitevd-fitevd.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o draw-mhmm draw_mhmm-draw-mhmm.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fasta-io fasta_io-fasta-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o beadstring beadstring-beadstring.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fimo fimo-fimo.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gendb gendb-gendb.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o log-hmm log_hmm-log-hmm.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gomo gomo-gomo.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm mhmm-mhmm.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm-io mhmm_io-mhmm-io.o libmetameme.la -lm libtool: link: i686-pc-linux-gnu-gcc -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ceqlogo ceqlogo-ceqlogo.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz ./.libs/liblogo.a -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmme mhmme.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmms mhmms-mhmms.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmmscan mhmmscan-mhmmscan.o libmetameme.la libcommon.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o motiph motiph-motiph.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o pmp_bf pmp_bf-pmp_bf.o libmetameme.la -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-io meme_io-meme-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o shadow shadow-shadow.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tomtom tomtom-tomtom.o libmetameme.la liblogo.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tree tree-tree.o libmetameme.la -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o qvalue qvalue-qvalue.o libmetameme.la -lm -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ranksum_test ranksum_test-ranksum_test.o libmetameme.la -lm -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o libmetameme.la -lm -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reduce-alignment reduce_alignment-reduce-alignment.o libmetameme.la -lm -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmms mhmms-mhmms.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm mhmm-mhmm.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm-io mhmm_io-mhmm-io.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmme mhmme.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o motiph motiph-motiph.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o pmp_bf pmp_bf-pmp_bf.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmmscan mhmmscan-mhmmscan.o ./.libs/libmetameme.a -L/usr/lib ./.libs/libcommon.a /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o shadow shadow-shadow.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tomtom tomtom-tomtom.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz ./.libs/liblogo.a -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o qvalue qvalue-qvalue.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ranksum_test ranksum_test-ranksum_test.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tree tree-tree.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libmetameme.la -lm -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reduce-alignment reduce_alignment-reduce-alignment.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm libtool: link: i686-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o ./.libs/libmetameme.a -L/usr/lib /usr/lib/libxslt.so /usr/lib/libxml2.so -ldl -lz -lm make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' Making all in scripts make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' cat_max.txt > cat_max /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' compare_dates.txt > compare_dates /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-fetch.txt > fasta-fetch /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-get-markov.txt > fasta-get-markov /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-make-index.txt > fasta-make-index /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-shuffle-letters.txt > fasta-shuffle-letters /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' fasta-unique-names.txt > fasta-unique-names /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' glam2html.py > glam2html /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' glam2psfm.py > glam2psfm /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' glam2scan2html.py > glam2scan2html /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' get_db_csv.txt > get_db_csv /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' jaspar2meme.pl > jaspar2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' hart2meme-bkg.pl > hart2meme-bkg /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' hartemink2psp.pl > hartemink2psp /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' iupac2meme.pl > iupac2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' make_logodds.txt > make_logodds /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mast.txt > mast /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mast2html.pl > mast2html /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' meme.txt > meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mcast.pl > mcast /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' memehtml2text.pl > memehtml2text /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' mhmm2html.pl > mhmm2html /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' motif2meme.pm.in > motif2meme.pm /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' priority2meme.pl > priority2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' scpd2meme.pl > scpd2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' tamo2meme.pl > tamo2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' transfac2meme.txt > transfac2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' uniprobe2meme.pl > uniprobe2meme /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' update_db.txt > update_db /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' convert2html.txt > convert2html.pl make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' Making all in tests make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' Making all in common make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' Making all in clustalw2fasta make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' Making all in draw-mhmm make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' Making all in mast make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' Making all in meme make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' Making all in mhmm make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' Making all in mhmms make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' Making all in motiph make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' Making all in scaffold make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' Making all in tomtom make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' Making all in gomo make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' Making all in qvalue make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' Making all in web make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' Making all in website make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' Making all in scripts make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' changetoweb.txt > changetoweb sed -e 's%use lib qw(.)%use lib qw(/opt/meme/lib/perl)%' \ -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' metameme.txt > metameme sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' oldmeme2meme.txt > oldmeme2meme /bin/sed -e 's%@SITE_CONTACT@%@tinderbox%' -e 's%@METAMEME_SITE_CONTACT@%%' -e 's%@BIN_DIR@%/opt/meme/bin%' -e 's%@MODULE_DIR@%/opt/meme/lib/perl%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@METAMEMEDIR@%/opt/meme%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@WEB_DIR@%/opt/meme/web%' -e 's%@METAMEME_WEB_DIR@%%' -e 's%@MAX_TIME@%7200%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@METAMEME_SITE_URL@%%' Globals.txt > Globals.pm make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' Making all in doc make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' Making all in examples make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' Making all in fimo_example_output_files make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' Making all in glam2_example_output_files make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' Making all in glam2scan_example_output_files make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' Making all in meme_example_output_files make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' Making all in mast_example_output_files make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' Making all in tomtom_example_output_files make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' Making all in images make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' Making all in . make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' ../src/xsltproc_lite ./options.xsl alphtype.xml alphtype.html ../src/xsltproc_lite ./options.xsl ama.xml ama.html ../src/xsltproc_lite ./options.xsl beadstring.xml beadstring.html ../src/xsltproc_lite ./options.xsl ceqlogo.xml ceqlogo.html ../src/xsltproc_lite ./options.xsl clustalw2phylip.xml clustalw2phylip.html ../src/xsltproc_lite ./options.xsl draw-mhmm.xml draw-mhmm.html ../src/xsltproc_lite ./options.xsl fasta-get-markov.xml fasta-get-markov.html ../src/xsltproc_lite ./options.xsl fasta-io.xml fasta-io.html ../src/xsltproc_lite ./options.xsl fimo.xml fimo.html ../src/xsltproc_lite ./options.xsl fitevd.xml fitevd.html ../src/xsltproc_lite ./options.xsl gendb.xml gendb.html ../src/xsltproc_lite ./options.xsl getsize.xml getsize.html ../src/xsltproc_lite ./options.xsl gomo.xml gomo.html ../src/xsltproc_lite ./options.xsl log-hmm.xml log-hmm.html ../src/xsltproc_lite ./options.xsl meme-io.xml meme-io.html ../src/xsltproc_lite ./options.xsl mhmm.xml mhmm.html ../src/xsltproc_lite ./options.xsl mhmme.xml mhmme.html ../src/xsltproc_lite ./options.xsl mhmms.xml mhmms.html ../src/xsltproc_lite ./options.xsl miao.xml miao.html /bin/sed -e 's%\@VERSION\@%4.3.0%g' -e 's%\@CONTACT\@%@tinderbox%g' -e 's%\@METAMEME_CONTACT\@%%g' -e 's%\@URL\@%http://tinderbox/meme%g' modified-template-footer.in > modified-template-footer.js ../src/xsltproc_lite ./options.xsl motiph.xml motiph.html ../src/xsltproc_lite ./options.xsl pmp_bf.xml pmp_bf.html ../src/xsltproc_lite ./options.xsl qvalue.xml qvalue.html ../src/xsltproc_lite ./options.xsl readseq.xml readseq.html ../src/xsltproc_lite ./options.xsl reconcile-tree-alignment.xml reconcile-tree-alignment.html ../src/xsltproc_lite ./options.xsl reduce-alignment.xml reduce-alignment.html ../src/xsltproc_lite ./options.xsl remove-alignment-gaps.xml remove-alignment-gaps.html ../src/xsltproc_lite ./options.xsl shadow.xml shadow.html make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' Making all in etc make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' fimo.sh.in > fimo.sh /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' glam2.sh.in > glam2.sh /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' glam2scan.sh.in > glam2scan.sh /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' gomo.sh.in > gomo.sh /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' mast.sh.in > mast.sh /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' meme-mast.sh.in > meme-mast.sh /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/fimo.sh%' fimo_config.xml.in > fimo_config.xml /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/glam2.sh%' glam2_config.xml.in > glam2_config.xml /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/glam2scan.sh%' glam2scan_config.xml.in > glam2scan_config.xml /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/gomo.sh%' gomo_config.xml.in > gomo_config.xml /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@METAMEME_URL@%http://tinderbox/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' gomo.xsl.in > gomo.xsl /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/mast.sh%' mast_config.xml.in > mast_config.xml echo '#,,,,,,,' > mast_db_names.csv /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/meme-mast.sh%' meme_config.xml.in > meme_config.xml /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@METAMEME_URL@%http://tinderbox/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' meme.xsl.in > meme.xsl make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >>> Source compiled. * Tinderbox QA Notice: 'make' called by src_test make -j14 test cd scripts; make check make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' make check-TESTS make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@tinderbox%@tinderbox%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%tinderbox%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://tinderbox/meme%' -e 's%@DOCDIR@%%' metatest.pl > metatest chmod ugo+x metatest Meme test for --------------------------------- Dataset Model result --------------------------------- crp0 oops OK crp0 zoops OK crp0 tcm OK psp_test zoops_psp OK Mast test for --------------------------------- Dataset Model result --------------------------------- crp0 oops OK crp0 zoops OK crp0 tcm OK PASS: runcheck testdir = ../tests ************************************************************ Testing mhmms . . . /var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/mhmms --maxseqs 3 --quiet mhmm/crp0.linear.mhmm common/crp0.fasta sh: /var/tmp/mhmms.3218.tmp: Permission denied sh: /var/tmp/mhmms.3218.tmp.sed: Permission denied diff: /var/tmp/mhmms.3218.tmp.sed: No such file or directory FAIL mhmms had a non-zero exit status (1) FAIL: metatest =================== 1 of 2 tests failed =================== make[2]: *** [check-TESTS] Error 1 make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' make[1]: *** [check-am] Error 2 make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' make: *** [test] Error 2 * ERROR: sci-biology/meme-4.3.0 failed: * Regression tests failed. * * Call stack: * ebuild.sh, line 61: Called src_test * environment, line 2969: Called die * The specific snippet of code: * make test || die "Regression tests failed." * * If you need support, post the output of 'emerge --info =sci-biology/meme-4.3.0', * the complete build log and the output of 'emerge -pqv =sci-biology/meme-4.3.0'. * The complete build log is located at '/var/log/portage/build/sci-biology/meme-4.3.0:20091215-173742.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/meme-4.3.0/temp/environment'. * S: '/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >>> Install meme-4.3.0 into /var/tmp/portage/sci-biology/meme-4.3.0/image/ category sci-biology make -j14 install DESTDIR=/var/tmp/portage/sci-biology/meme-4.3.0/image/ Making install in src make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make install-recursive make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' Making install in filters make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' Making install in purge make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" make[5]: Nothing to be done for `install-data-am'. /bin/sh ../../../libtool --mode=install /usr/bin/install -c 'purge' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/purge' libtool: install: /usr/bin/install -c purge /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/purge make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge' Making install in dust make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" make[5]: Nothing to be done for `install-data-am'. /bin/sh ../../../libtool --mode=install /usr/bin/install -c 'dust' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/dust' libtool: install: /usr/bin/install -c dust /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/dust make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters' Making install in libxml2 make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[5]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2' Making install in libxslt make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt' Making install in . make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" make[4]: Nothing to be done for `install-data-am'. /bin/sh ../libtool --mode=install /usr/bin/install -c 'alphtype' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/alphtype' libtool: install: /usr/bin/install -c alphtype /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/alphtype /bin/sh ../libtool --mode=install /usr/bin/install -c 'ama' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ama' libtool: install: /usr/bin/install -c ama /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ama /bin/sh ../libtool --mode=install /usr/bin/install -c 'beadstring' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/beadstring' libtool: install: /usr/bin/install -c beadstring /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/beadstring /bin/sh ../libtool --mode=install /usr/bin/install -c 'ceqlogo' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ceqlogo' libtool: install: /usr/bin/install -c ceqlogo /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ceqlogo /bin/sh ../libtool --mode=install /usr/bin/install -c 'clustalw-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw-io' libtool: install: /usr/bin/install -c clustalw-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw-io /bin/sh ../libtool --mode=install /usr/bin/install -c 'clustalw2fasta' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2fasta' libtool: install: /usr/bin/install -c clustalw2fasta /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2fasta /bin/sh ../libtool --mode=install /usr/bin/install -c 'clustalw2phylip' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2phylip' libtool: install: /usr/bin/install -c clustalw2phylip /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2phylip /bin/sh ../libtool --mode=install /usr/bin/install -c 'draw-mhmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/draw-mhmm' libtool: install: /usr/bin/install -c draw-mhmm /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/draw-mhmm /bin/sh ../libtool --mode=install /usr/bin/install -c 'fasta-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-io' libtool: install: /usr/bin/install -c fasta-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-io /bin/sh ../libtool --mode=install /usr/bin/install -c 'fimo' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fimo' libtool: install: /usr/bin/install -c fimo /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fimo /bin/sh ../libtool --mode=install /usr/bin/install -c 'fitevd' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fitevd' libtool: install: /usr/bin/install -c fitevd /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fitevd /bin/sh ../libtool --mode=install /usr/bin/install -c 'gendb' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gendb' libtool: install: /usr/bin/install -c gendb /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gendb /bin/sh ../libtool --mode=install /usr/bin/install -c 'getsize' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/getsize' libtool: install: /usr/bin/install -c getsize /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/getsize /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2' libtool: install: /usr/bin/install -c glam2 /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2 /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2format' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2format' libtool: install: /usr/bin/install -c glam2format /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2format /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2mask' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2mask' libtool: install: /usr/bin/install -c glam2mask /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2mask /bin/sh ../libtool --mode=install /usr/bin/install -c 'glam2scan' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan' libtool: install: /usr/bin/install -c glam2scan /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan /bin/sh ../libtool --mode=install /usr/bin/install -c 'gomo' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gomo' libtool: install: /usr/bin/install -c gomo /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gomo /bin/sh ../libtool --mode=install /usr/bin/install -c 'log-hmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/log-hmm' libtool: install: /usr/bin/install -c log-hmm /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/log-hmm /bin/sh ../libtool --mode=install /usr/bin/install -c 'mast.bin' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast.bin' libtool: install: /usr/bin/install -c mast.bin /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast.bin /bin/sh ../libtool --mode=install /usr/bin/install -c 'meme.bin' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme.bin' libtool: install: /usr/bin/install -c meme.bin /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme.bin /bin/sh ../libtool --mode=install /usr/bin/install -c 'meme-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-io' libtool: install: /usr/bin/install -c meme-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-io /bin/sh ../libtool --mode=install /usr/bin/install -c 'meme-xml-html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-xml-html' libtool: install: /usr/bin/install -c meme-xml-html /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-xml-html /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm' libtool: install: /usr/bin/install -c mhmm /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmm-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm-io' libtool: install: /usr/bin/install -c mhmm-io /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm-io /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmme' libtool: install: /usr/bin/install -c mhmme /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmme /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmms' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmms' libtool: install: /usr/bin/install -c mhmms /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmms /bin/sh ../libtool --mode=install /usr/bin/install -c 'mhmmscan' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmmscan' libtool: install: /usr/bin/install -c mhmmscan /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmmscan /bin/sh ../libtool --mode=install /usr/bin/install -c 'motiph' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motiph' libtool: install: /usr/bin/install -c motiph /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motiph /bin/sh ../libtool --mode=install /usr/bin/install -c 'pmp_bf' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/pmp_bf' libtool: install: /usr/bin/install -c pmp_bf /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/pmp_bf /bin/sh ../libtool --mode=install /usr/bin/install -c 'readseq' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/readseq' libtool: install: /usr/bin/install -c readseq /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/readseq /bin/sh ../libtool --mode=install /usr/bin/install -c 'shadow' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/shadow' libtool: install: /usr/bin/install -c shadow /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/shadow /bin/sh ../libtool --mode=install /usr/bin/install -c 'tomtom' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tomtom' libtool: install: /usr/bin/install -c tomtom /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tomtom /bin/sh ../libtool --mode=install /usr/bin/install -c 'tree' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tree' libtool: install: /usr/bin/install -c tree /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tree /bin/sh ../libtool --mode=install /usr/bin/install -c 'qvalue' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/qvalue' libtool: install: /usr/bin/install -c qvalue /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/qvalue /bin/sh ../libtool --mode=install /usr/bin/install -c 'ranksum_test' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ranksum_test' libtool: install: /usr/bin/install -c ranksum_test /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ranksum_test /bin/sh ../libtool --mode=install /usr/bin/install -c 'reconcile-tree-alignment' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reconcile-tree-alignment' libtool: install: /usr/bin/install -c reconcile-tree-alignment /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reconcile-tree-alignment /bin/sh ../libtool --mode=install /usr/bin/install -c 'reduce-alignment' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reduce-alignment' libtool: install: /usr/bin/install -c reduce-alignment /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reduce-alignment /bin/sh ../libtool --mode=install /usr/bin/install -c 'remove-alignment-gaps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/remove-alignment-gaps' libtool: install: /usr/bin/install -c remove-alignment-gaps /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/remove-alignment-gaps /bin/sh ../libtool --mode=install /usr/bin/install -c 'xsltproc_lite' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/xsltproc_lite' libtool: install: /usr/bin/install -c xsltproc_lite /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/xsltproc_lite make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src' Making install in scripts make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" test -z "/opt/meme/lib/perl" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl" /usr/bin/install -c 'convert2html.pl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl/convert2html.pl' /usr/bin/install -c 'cat_max' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/cat_max' /usr/bin/install -c 'compare_dates' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/compare_dates' /usr/bin/install -c 'download' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/download' /usr/bin/install -c 'fasta-fetch' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-fetch' /usr/bin/install -c 'fasta-get-markov' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-get-markov' /usr/bin/install -c 'fasta-make-index' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-make-index' /usr/bin/install -c 'fasta-shuffle-letters' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-shuffle-letters' /usr/bin/install -c 'fasta-unique-names' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-unique-names' /usr/bin/install -c 'glam2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2html' /usr/bin/install -c 'glam2psfm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2psfm' /usr/bin/install -c 'glam2scan2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan2html' /usr/bin/install -c 'get_db_csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/get_db_csv' /usr/bin/install -c 'jaspar2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/jaspar2meme' /usr/bin/install -c 'hart2meme-bkg' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/hart2meme-bkg' /usr/bin/install -c 'hartemink2psp' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/hartemink2psp' /usr/bin/install -c 'iupac2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/iupac2meme' /usr/bin/install -c 'make_logodds' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/make_logodds' /usr/bin/install -c 'mast' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast' /usr/bin/install -c 'mast2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast2html' /usr/bin/install -c 'meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme' /usr/bin/install -c 'mcast' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mcast' /usr/bin/install -c 'memehtml2text' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/memehtml2text' /usr/bin/install -c 'mhmm2html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm2html' /usr/bin/install -c 'motif2meme.pm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motif2meme.pm' /usr/bin/install -c 'plotgen' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/plotgen' /usr/bin/install -c 'priority2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/priority2meme' /usr/bin/install -c 'sd' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/sd' /usr/bin/install -c 'scpd2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/scpd2meme' /usr/bin/install -c 'tamo2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tamo2meme' /usr/bin/install -c 'transfac2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/transfac2meme' /usr/bin/install -c 'uniprobe2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/uniprobe2meme' /usr/bin/install -c 'update_db' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/update_db' /usr/bin/install -c 'update_meme_tests' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/update_meme_tests' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts' Making install in tests make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' Making install in common make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common' Making install in clustalw2fasta make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta' Making install in draw-mhmm make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm' Making install in mast make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast' Making install in meme make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme' Making install in mhmm make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm' Making install in mhmms make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms' Making install in motiph make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph' Making install in scaffold make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold' Making install in tomtom make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom' Making install in gomo make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo' Making install in qvalue make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue' Making install in web make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web' make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests' Making install in website make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' Making install in scripts make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' test -z "/opt/meme/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin" test -z "/opt/meme/lib/perl" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl" /usr/bin/install -c 'Globals.pm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib/perl/Globals.pm' /usr/bin/install -c 'changetoweb' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/changetoweb' /usr/bin/install -c 'metameme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/metameme' /usr/bin/install -c 'oldmeme2meme' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/oldmeme2meme' make install-exec-hook make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' make[4]: Nothing to be done for `install-exec-hook'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts' make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website' Making install in doc make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' Making install in examples make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' Making install in fimo_example_output_files make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples/fimo_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files" /usr/bin/install -c -m 644 'fimo.gff' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.gff' /usr/bin/install -c -m 644 'fimo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.html' /usr/bin/install -c -m 644 'fimo.txt' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.txt' /usr/bin/install -c -m 644 'fimo.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo.xml' /usr/bin/install -c -m 644 'cisml.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/cisml.css' /usr/bin/install -c -m 644 'fimo-to-html.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files/fimo-to-html.xsl' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files' Making install in glam2_example_output_files make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples/glam2_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files" /usr/bin/install -c -m 644 'glam2.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/glam2.html' /usr/bin/install -c -m 644 'logo1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo1.png' /usr/bin/install -c -m 644 'logo_ssc1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc1.png' /usr/bin/install -c -m 644 'logo2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo2.png' /usr/bin/install -c -m 644 'logo_ssc2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc2.png' /usr/bin/install -c -m 644 'logo3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo3.png' /usr/bin/install -c -m 644 'logo_ssc3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc3.png' /usr/bin/install -c -m 644 'logo4.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo4.png' /usr/bin/install -c -m 644 'logo_ssc4.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc4.png' /usr/bin/install -c -m 644 'logo5.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo5.png' /usr/bin/install -c -m 644 'logo_ssc5.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc5.png' /usr/bin/install -c -m 644 'logo6.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo6.png' /usr/bin/install -c -m 644 'logo_ssc6.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc6.png' /usr/bin/install -c -m 644 'logo7.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo7.png' /usr/bin/install -c -m 644 'logo_ssc7.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc7.png' /usr/bin/install -c -m 644 'logo8.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo8.png' /usr/bin/install -c -m 644 'logo_ssc8.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc8.png' /usr/bin/install -c -m 644 'logo9.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo9.png' /usr/bin/install -c -m 644 'logo_ssc9.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files/logo_ssc9.png' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files' Making install in glam2scan_example_output_files make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples/glam2scan_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2scan_example_output_files" /usr/bin/install -c -m 644 'glam2scan.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2scan_example_output_files/glam2scan.html' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files' Making install in meme_example_output_files make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples/meme_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files" /usr/bin/install -c -m 644 'meme.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.xml' /usr/bin/install -c -m 644 'meme.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.xsl' /usr/bin/install -c -m 644 'meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.html' /usr/bin/install -c -m 644 'meme.txt' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/meme.txt' /usr/bin/install -c -m 644 'logo1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo1.png' /usr/bin/install -c -m 644 'logo2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo2.png' /usr/bin/install -c -m 644 'logo3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo3.png' /usr/bin/install -c -m 644 'logo1.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo1.eps' /usr/bin/install -c -m 644 'logo2.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo2.eps' /usr/bin/install -c -m 644 'logo3.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo3.eps' /usr/bin/install -c -m 644 'logo_ssc1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc1.png' /usr/bin/install -c -m 644 'logo_ssc2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc2.png' /usr/bin/install -c -m 644 'logo_ssc3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc3.png' /usr/bin/install -c -m 644 'logo_ssc1.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc1.eps' /usr/bin/install -c -m 644 'logo_ssc2.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc2.eps' /usr/bin/install -c -m 644 'logo_ssc3.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files/logo_ssc3.eps' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files' Making install in mast_example_output_files make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples/mast_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/mast_example_output_files" /usr/bin/install -c -m 644 'mast.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/mast_example_output_files/mast.html' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files' Making install in tomtom_example_output_files make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples/tomtom_example_output_files" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files" /usr/bin/install -c -m 644 'logo_1_+1.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_1_+1.eps' /usr/bin/install -c -m 644 'logo_1_+1.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_1_+1.png' /usr/bin/install -c -m 644 'logo_2_+2.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_2_+2.eps' /usr/bin/install -c -m 644 'logo_2_+2.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_2_+2.png' /usr/bin/install -c -m 644 'logo_3_+3.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_3_+3.eps' /usr/bin/install -c -m 644 'logo_3_+3.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/logo_3_+3.png' /usr/bin/install -c -m 644 'tomtom.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files/tomtom.html' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' make[4]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' make[4]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/examples" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples" /usr/bin/install -c -m 644 'At.fa' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/At.fa' /usr/bin/install -c -m 644 'sample-kabat.seq' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-kabat.seq' /usr/bin/install -c -m 644 'sample-glam2-aln.dna' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-glam2-aln.dna' /usr/bin/install -c -m 644 'sample-glam2-aln.protein' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-glam2-aln.protein' /usr/bin/install -c -m 644 'sample-motif.dna' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-motif.dna' /usr/bin/install -c -m 644 'sample-dna-motif.meme-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-dna-motif.meme-io' /usr/bin/install -c -m 644 'sample-protein-motif.meme-io' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/sample-protein-motif.meme-io' make[4]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples' Making install in images make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' make[3]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc/images" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images" /usr/bin/install -c -m 644 'cbrc_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/cbrc_logo.png' /usr/bin/install -c -m 644 'fimo_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/fimo_logo.png' /usr/bin/install -c -m 644 'glam2_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/glam2_logo.png' /usr/bin/install -c -m 644 'glam2scan_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/glam2scan_logo.png' /usr/bin/install -c -m 644 'nbcr_logo_trans.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/nbcr_logo_trans.gif' /usr/bin/install -c -m 644 'ncrr_logo.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/ncrr_logo.gif' /usr/bin/install -c -m 644 'schematic.fig' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/schematic.fig' /usr/bin/install -c -m 644 'schematic.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/schematic.png' /usr/bin/install -c -m 644 'sdsc_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/sdsc_logo.png' /usr/bin/install -c -m 644 'tomtom_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/tomtom_logo.png' /usr/bin/install -c -m 644 'uq_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/uq_logo.png' /usr/bin/install -c -m 644 'ucsd_logo.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/ucsd_logo.png' /usr/bin/install -c -m 644 'UWlogo150p.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/UWlogo150p.gif' /usr/bin/install -c -m 644 'webserver_schema.png' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images/webserver_schema.png' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images' Making install in . make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' make[3]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/doc" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc" /usr/bin/install -c -m 644 'alphabets.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/alphabets.html' /usr/bin/install -c -m 644 'authors.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/authors.html' /usr/bin/install -c -m 644 'bfile-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/bfile-format.html' /usr/bin/install -c -m 644 'cite.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/cite.html' /usr/bin/install -c -m 644 'clustalw2fasta.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/clustalw2fasta.html' /usr/bin/install -c -m 644 'clustalw-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/clustalw-format.html' /usr/bin/install -c -m 644 'copyright.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/copyright.html' /usr/bin/install -c -m 644 'fasta-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fasta-format.html' /usr/bin/install -c -m 644 'glam2.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2.css' /usr/bin/install -c -m 644 'glam2format_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2format_man.html' /usr/bin/install -c -m 644 'glam2mask_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2mask_man.html' /usr/bin/install -c -m 644 'glam2scan_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2scan_man.html' /usr/bin/install -c -m 644 'glam2_alphabet.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_alphabet.html' /usr/bin/install -c -m 644 'glam2_dirichlet.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_dirichlet.html' /usr/bin/install -c -m 644 'glam2_install.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_install.html' /usr/bin/install -c -m 644 'glam2_man.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_man.html' /usr/bin/install -c -m 644 'glam2-template-header.js' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2-template-header.js' /usr/bin/install -c -m 644 'GLAM2_method.pdf' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/GLAM2_method.pdf' /usr/bin/install -c -m 644 'glam2_ref.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_ref.html' /usr/bin/install -c -m 644 'glam2_tut.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/glam2_tut.html' /usr/bin/install -c -m 644 'install.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/install.html' /usr/bin/install -c -m 644 'lipo.fasta' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.fasta' /usr/bin/install -c -m 644 'lipo.linear.all.mhmms' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.linear.all.mhmms' /usr/bin/install -c -m 644 'lipo.linear.mhmm' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.linear.mhmm' /usr/bin/install -c -m 644 'lipo.meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.meme.html' /usr/bin/install -c -m 644 'lipo.meme.stripped.txt' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/lipo.meme.stripped.txt' /usr/bin/install -c -m 644 'mast.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mast.html' /usr/bin/install -c -m 644 'mcast.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mcast.html' /usr/bin/install -c -m 644 'meme.dtd' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme.dtd' /usr/bin/install -c -m 644 'meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme.html' /usr/bin/install -c -m 644 'meme-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-format.html' /usr/bin/install -c -m 644 'meme-install.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-install.html' /usr/bin/install -c -m 644 'meme-suite-logo.js' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-suite-logo.js' /usr/bin/install -c -m 644 'meme-suite.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-suite.css' /usr/bin/install -c -m 644 'metameme.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/metameme.css' /usr/bin/install -c -m 644 'meta-meme.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meta-meme.gif' /usr/bin/install -c -m 644 'mhmm-output.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmm-output.html' /usr/bin/install -c -m 644 'mhmmscan.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmmscan.html' /usr/bin/install -c -m 644 'overview.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/overview.html' /usr/bin/install -c -m 644 'purge.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/purge.html' /usr/bin/install -c -m 644 'release-notes.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/release-notes.html' /usr/bin/install -c -m 644 'transfac2meme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/transfac2meme.html' /usr/bin/install -c -m 644 'sdsc.gif' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/sdsc.gif' /usr/bin/install -c -m 644 'select-star-species.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/select-star-species.html' /usr/bin/install -c -m 644 'standards.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/standards.html' /usr/bin/install -c -m 644 'tomtom.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/tomtom.html' /usr/bin/install -c -m 644 'transfac-format.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/transfac-format.html' /usr/bin/install -c -m 644 'alphtype.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/alphtype.html' /usr/bin/install -c -m 644 'ama.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/ama.html' /usr/bin/install -c -m 644 'beadstring.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/beadstring.html' /usr/bin/install -c -m 644 'ceqlogo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/ceqlogo.html' /usr/bin/install -c -m 644 'clustalw2phylip.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/clustalw2phylip.html' /usr/bin/install -c -m 644 'draw-mhmm.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/draw-mhmm.html' /usr/bin/install -c -m 644 'fasta-get-markov.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fasta-get-markov.html' /usr/bin/install -c -m 644 'fasta-io.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fasta-io.html' /usr/bin/install -c -m 644 'fimo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fimo.html' /usr/bin/install -c -m 644 'fitevd.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/fitevd.html' /usr/bin/install -c -m 644 'gendb.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/gendb.html' /usr/bin/install -c -m 644 'getsize.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/getsize.html' /usr/bin/install -c -m 644 'gomo.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/gomo.html' /usr/bin/install -c -m 644 'log-hmm.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/log-hmm.html' /usr/bin/install -c -m 644 'meme-io.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/meme-io.html' /usr/bin/install -c -m 644 'mhmm.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmm.html' /usr/bin/install -c -m 644 'mhmme.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmme.html' /usr/bin/install -c -m 644 'mhmms.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/mhmms.html' /usr/bin/install -c -m 644 'miao.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/miao.html' /usr/bin/install -c -m 644 'modified-template-footer.js' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/modified-template-footer.js' /usr/bin/install -c -m 644 'motiph.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/motiph.html' /usr/bin/install -c -m 644 'pmp_bf.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/pmp_bf.html' /usr/bin/install -c -m 644 'qvalue.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/qvalue.html' /usr/bin/install -c -m 644 'readseq.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/readseq.html' /usr/bin/install -c -m 644 'reconcile-tree-alignment.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/reconcile-tree-alignment.html' /usr/bin/install -c -m 644 'reduce-alignment.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/reduce-alignment.html' /usr/bin/install -c -m 644 'remove-alignment-gaps.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/remove-alignment-gaps.html' /usr/bin/install -c -m 644 'shadow.html' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/shadow.html' make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc' Making install in etc make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[2]: Nothing to be done for `install-exec-am'. test -z "/opt/meme/etc" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc" test -z "/opt/meme/etc" || /bin/mkdir -p "/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc" /usr/bin/install -c 'fimo.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo.sh' /usr/bin/install -c -m 644 'beadstring.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/beadstring.xsl' /usr/bin/install -c 'glam2.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2.sh' /usr/bin/install -c -m 644 'bkg.jpg' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/bkg.jpg' /usr/bin/install -c 'glam2scan.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2scan.sh' /usr/bin/install -c -m 644 'cisml.css' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml.css' /usr/bin/install -c 'gomo.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo.sh' /usr/bin/install -c -m 644 'fimo.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo.xsl' /usr/bin/install -c 'mast.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast.sh' /usr/bin/install -c -m 644 'hmm-text.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/hmm-text.xsl' /usr/bin/install -c 'meme-mast.sh' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme-mast.sh' /usr/bin/install -c -m 644 'mast.doc' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast.doc' /usr/bin/install -c -m 644 'mast_upstream_db.list' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast_upstream_db.list' /usr/bin/install -c -m 644 'meme.doc' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme.doc' /usr/bin/install -c -m 644 'gomo_db.csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo_db.csv' /usr/bin/install -c -m 644 'prior1.plib' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/prior1.plib' /usr/bin/install -c -m 644 'prior30.plib' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/prior30.plib' /usr/bin/install -c -m 644 'template.eps' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/template.eps' /usr/bin/install -c -m 644 'template.svg' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/template.svg' /usr/bin/install -c -m 644 'tomtom_db_names.csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/tomtom_db_names.csv' /usr/bin/install -c -m 644 'cisml-to-gff.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml-to-gff.xsl' /usr/bin/install -c -m 644 'cisml-to-html.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml-to-html.xsl' /usr/bin/install -c -m 644 'cisml-to-text.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/cisml-to-text.xsl' /usr/bin/install -c -m 644 'fimo-to-gff.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo-to-gff.xsl' /usr/bin/install -c -m 644 'fimo-to-html.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo-to-html.xsl' /usr/bin/install -c -m 644 'fimo-to-text.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo-to-text.xsl' /usr/bin/install -c -m 644 'fimo_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/fimo_config.xml' /usr/bin/install -c -m 644 'glam2_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2_config.xml' /usr/bin/install -c -m 644 'glam2scan_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/glam2scan_config.xml' /usr/bin/install -c -m 644 'gomo_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo_config.xml' /usr/bin/install -c -m 644 'gomo.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/gomo.xsl' /usr/bin/install -c -m 644 'mast_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast_config.xml' /usr/bin/install -c -m 644 'mast_db_names.csv' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/mast_db_names.csv' /usr/bin/install -c -m 644 'meme_config.xml' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme_config.xml' /usr/bin/install -c -m 644 'meme.xsl' '/var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc/meme.xsl' make install-data-hook make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[3]: Nothing to be done for `install-data-hook'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc' make[1]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' make[2]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' make[2]: Nothing to be done for `install-exec-am'. mkdir -p /var/tmp/portage/sci-biology/meme-4.3.0/image//var/log/meme chmod a+w /var/tmp/portage/sci-biology/meme-4.3.0/image//var/log/meme make install-data-hook make[3]: Entering directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' mkdir -p /var/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/db make[3]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' make[2]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' make[1]: Leaving directory `/var/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' >>> Completed installing meme-4.3.0 into /var/tmp/portage/sci-biology/meme-4.3.0/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment opt/meme/bin/tree opt/meme/bin/purge opt/meme/bin/reconcile-tree-alignment opt/meme/bin/tomtom opt/meme/bin/log-hmm opt/meme/bin/alphtype opt/meme/bin/reduce-alignment opt/meme/bin/ama opt/meme/bin/mast.bin opt/meme/bin/meme.bin opt/meme/bin/mhmms opt/meme/bin/fimo opt/meme/bin/xsltproc_lite opt/meme/bin/clustalw2phylip opt/meme/bin/clustalw2fasta opt/meme/bin/ceqlogo opt/meme/bin/fitevd opt/meme/bin/draw-mhmm opt/meme/bin/ranksum_test opt/meme/bin/meme-xml-html opt/meme/bin/mhmme opt/meme/bin/getsize opt/meme/bin/clustalw-io opt/meme/bin/remove-alignment-gaps opt/meme/bin/fasta-io opt/meme/bin/glam2format opt/meme/bin/dust opt/meme/bin/meme-io opt/meme/bin/mhmmscan opt/meme/bin/glam2scan opt/meme/bin/gendb opt/meme/bin/glam2 opt/meme/bin/mhmm opt/meme/bin/glam2mask opt/meme/bin/gomo opt/meme/bin/beadstring opt/meme/bin/mhmm-io opt/meme/bin/shadow opt/meme/bin/qvalue opt/meme/bin/readseq opt/meme/bin/motiph opt/meme/bin/pmp_bf * Removing /usr/share/doc * Removing /usr/share/info