[patch] fixing as-needed issues

snpfile-2.0.1-as-needed.patch (text/plain), 5.06 KB, created by Kacper Kowalik (Xarthisius) (RETIRED) on 2009-12-06 19:32:50 UTC

--- snpfile-2.0.1.orig/Makefile.am	2008-05-03 16:25:44.000000000 +0200
+++ snpfile-2.0.1/Makefile.am	2009-12-06 20:06:41.241170743 +0100
@@ -238,8 +238,8 @@
 metadata_cache_prototype_LDFLAGS  =
 metadata_cache_prototype_LDFLAGS += -L.
 metadata_cache_prototype_LDADD  = 
-metadata_cache_prototype_LDADD += $(BOOST_SIGNALS_LIB)
 metadata_cache_prototype_LDADD += -lsnpfile
+metadata_cache_prototype_LDADD += $(BOOST_SIGNALS_LIB)
 
 
 matrix_benchmark_LDADD  = 
@@ -325,18 +325,18 @@
 text2snpfile_LDFLAGS  =
 text2snpfile_LDFLAGS += -L.
 text2snpfile_LDADD  =
+text2snpfile_LDADD += -lsnpfile
 text2snpfile_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 text2snpfile_LDADD += $(BOOST_SIGNALS_LIB)
-text2snpfile_LDADD += -lsnpfile
 
 snpfile2text_SOURCES =
 snpfile2text_SOURCES += snpfile2text.cc
 snpfile2text_LDFLAGS  =
 snpfile2text_LDFLAGS += -L.
 snpfile2text_LDADD  =
+snpfile2text_LDADD += -lsnpfile
 snpfile2text_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile2text_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile2text_LDADD += -lsnpfile
 
 
 snpfile2fastPHASE_SOURCES =
@@ -344,18 +344,18 @@
 snpfile2fastPHASE_LDFLAGS  =
 snpfile2fastPHASE_LDFLAGS += -L.
 snpfile2fastPHASE_LDADD  =
+snpfile2fastPHASE_LDADD += -lsnpfile
 snpfile2fastPHASE_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile2fastPHASE_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile2fastPHASE_LDADD += -lsnpfile
 
 fastPHASE2snpfile_SOURCES =				   
 fastPHASE2snpfile_SOURCES += fastPHASE2snpfile.cc	   
 fastPHASE2snpfile_LDFLAGS  =				   
 fastPHASE2snpfile_LDFLAGS += -L.			   
 fastPHASE2snpfile_LDADD  =				   
+fastPHASE2snpfile_LDADD += -lsnpfile                       
 fastPHASE2snpfile_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)	   
 fastPHASE2snpfile_LDADD += $(BOOST_SIGNALS_LIB)		   
-fastPHASE2snpfile_LDADD += -lsnpfile                       
 
 
 snpfile2haploview_SOURCES =
@@ -363,9 +363,9 @@
 snpfile2haploview_LDFLAGS  =
 snpfile2haploview_LDFLAGS += -L.
 snpfile2haploview_LDADD  =
+snpfile2haploview_LDADD += -lsnpfile
 snpfile2haploview_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile2haploview_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile2haploview_LDADD += -lsnpfile
 
 
 beagle_phase_snpfile_SOURCES =				 
@@ -373,68 +373,68 @@
 beagle_phase_snpfile_LDFLAGS  =				 
 beagle_phase_snpfile_LDFLAGS += -L.			 
 beagle_phase_snpfile_LDADD  =				 
+beagle_phase_snpfile_LDADD += -lsnpfile                     
 beagle_phase_snpfile_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)	 
 beagle_phase_snpfile_LDADD += $(BOOST_SIGNALS_LIB)		 
-beagle_phase_snpfile_LDADD += -lsnpfile                     
 
 snpfile_genotype_count_SOURCES =
 snpfile_genotype_count_SOURCES += genotype_count.cc
 snpfile_genotype_count_LDFLAGS  =
 snpfile_genotype_count_LDFLAGS += -L.
 snpfile_genotype_count_LDADD  =
+snpfile_genotype_count_LDADD += -lsnpfile
 snpfile_genotype_count_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile_genotype_count_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile_genotype_count_LDADD += -lsnpfile
 
 snpfile_phenotypes_SOURCES =
 snpfile_phenotypes_SOURCES += snpfile_phenotypes.cc
 snpfile_phenotypes_LDFLAGS  =
 snpfile_phenotypes_LDFLAGS += -L.
 snpfile_phenotypes_LDADD  =
+snpfile_phenotypes_LDADD += -lsnpfile
 snpfile_phenotypes_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile_phenotypes_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile_phenotypes_LDADD += -lsnpfile
 
 snpfile_markers_SOURCES =
 snpfile_markers_SOURCES += snpfile_markers.cc
 snpfile_markers_LDFLAGS  =
 snpfile_markers_LDFLAGS += -L.
 snpfile_markers_LDADD  =
+snpfile_markers_LDADD += -lsnpfile
 snpfile_markers_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile_markers_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile_markers_LDADD += -lsnpfile
 
 snpfile_metadata_info_SOURCES =
 snpfile_metadata_info_SOURCES += snpfile_metadata_info.cc
 snpfile_metadata_info_LDFLAGS  =
 snpfile_metadata_info_LDFLAGS += -L.
 snpfile_metadata_info_LDADD  =
-snpfile_metadata_info_LDADD += $(BOOST_SIGNALS_LIB)
 snpfile_metadata_info_LDADD += -lsnpfile
+snpfile_metadata_info_LDADD += $(BOOST_SIGNALS_LIB)
 
 snpfile_set_metadata_SOURCES =
 snpfile_set_metadata_SOURCES += snpfile_set_metadata.cc
 snpfile_set_metadata_LDFLAGS  =
 snpfile_set_metadata_LDFLAGS += -L.
 snpfile_set_metadata_LDADD  =
+snpfile_set_metadata_LDADD += -lsnpfile
 snpfile_set_metadata_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile_set_metadata_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile_set_metadata_LDADD += -lsnpfile
 
 snpfile_get_metadata_SOURCES =
 snpfile_get_metadata_SOURCES += snpfile_get_metadata.cc
 snpfile_get_metadata_LDFLAGS  =
 snpfile_get_metadata_LDFLAGS += -L.
 snpfile_get_metadata_LDADD  =
+snpfile_get_metadata_LDADD += -lsnpfile
 snpfile_get_metadata_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile_get_metadata_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile_get_metadata_LDADD += -lsnpfile
 
 snpfile_split_on_column_SOURCES =
 snpfile_split_on_column_SOURCES += snpfile_split_on_column.cc
 snpfile_split_on_column_LDFLAGS =
 snpfile_split_on_column_LDFLAGS += -L.
 snpfile_split_on_column_LDADD  =
+snpfile_split_on_column_LDADD += -lsnpfile
 snpfile_split_on_column_LDADD += $(BOOST_PROGRAM_OPTIONS_LIB)
 snpfile_split_on_column_LDADD += $(BOOST_SIGNALS_LIB)
-snpfile_split_on_column_LDADD += -lsnpfile