Build log

snpfile-2.0.1:20091128-024009.log (text/plain), 29.37 KB, created by Diego Elio Pettenò (RETIRED) on 2009-11-28 14:03:14 UTC

>>> Unpacking source...
>>> Unpacking snpfile-2.0.1.tar.gz to /var/tmp/portage/sci-biology/snpfile-2.0.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/snpfile-2.0.1/work
>>> Preparing source in /var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1 ...
 [32;01m*[0m Applying snpfile-2.0.1-gcc44.patch ...
[A[72C  [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1 ...
 * econf: updating snpfile-2.0.1/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating snpfile-2.0.1/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib
configure: loading site script /usr/share/config.site
configure: loading site script /usr/share/crossdev/include/site/linux
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking for a BSD-compatible install... /usr/bin/install -c
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking build system type... i686-pc-linux-gnu
checking for boostlib >= 1.33.1... yes
checking whether the Boost::Filesystem library is available... yes
checking for main in -lboost_filesystem... yes
checking whether the Boost::Program_Options library is available... yes
checking for main in -lboost_program_options... yes
checking whether the Boost::Thread library is available... yes
checking for main in -lboost_thread... yes
checking whether the Boost::IOStreams library is available... yes
checking for main in -lboost_iostreams... yes
checking whether the Boost::Serialization library is available... yes
checking for main in -lboost_serialization... yes
checking for main in -lboost_wserialization... yes
checking whether the Boost::Signals library is available... yes
checking for main in -lboost_signals... yes
checking whether the Boost::Date_Time library is available... yes
checking for main in -lboost_date_time... yes
checking whether the Boost::Regex library is available... yes
checking for main in -lboost_regex... yes
checking whether the Boost::UnitTestFramework library is available... yes
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
checking the name of the Boost::UnitTestFramework library... 
configure: Could not link against boost_unit_test_framework-mgw-s !
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.hh
config.status: executing depfiles commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1 ...
make -j14 
make  all-am
make[1]: Entering directory `/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1'
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT matrix.o -MD -MP -MF ".deps/matrix.Tpo" -c -o matrix.o matrix.cc; \
	then mv -f ".deps/matrix.Tpo" ".deps/matrix.Po"; else rm -f ".deps/matrix.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT file_matrix.o -MD -MP -MF ".deps/file_matrix.Tpo" -c -o file_matrix.o file_matrix.cc; \
	then mv -f ".deps/file_matrix.Tpo" ".deps/file_matrix.Po"; else rm -f ".deps/file_matrix.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT array_matrix.o -MD -MP -MF ".deps/array_matrix.Tpo" -c -o array_matrix.o array_matrix.cc; \
	then mv -f ".deps/array_matrix.Tpo" ".deps/array_matrix.Po"; else rm -f ".deps/array_matrix.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT byte_order_handler.o -MD -MP -MF ".deps/byte_order_handler.Tpo" -c -o byte_order_handler.o byte_order_handler.cc; \
	then mv -f ".deps/byte_order_handler.Tpo" ".deps/byte_order_handler.Po"; else rm -f ".deps/byte_order_handler.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT metadata.o -MD -MP -MF ".deps/metadata.Tpo" -c -o metadata.o metadata.cc; \
	then mv -f ".deps/metadata.Tpo" ".deps/metadata.Po"; else rm -f ".deps/metadata.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile.o -MD -MP -MF ".deps/snpfile.Tpo" -c -o snpfile.o snpfile.cc; \
	then mv -f ".deps/snpfile.Tpo" ".deps/snpfile.Po"; else rm -f ".deps/snpfile.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT text2snpfile.o -MD -MP -MF ".deps/text2snpfile.Tpo" -c -o text2snpfile.o text2snpfile.cc; \
	then mv -f ".deps/text2snpfile.Tpo" ".deps/text2snpfile.Po"; else rm -f ".deps/text2snpfile.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile2text.o -MD -MP -MF ".deps/snpfile2text.Tpo" -c -o snpfile2text.o snpfile2text.cc; \
	then mv -f ".deps/snpfile2text.Tpo" ".deps/snpfile2text.Po"; else rm -f ".deps/snpfile2text.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile2fastPHASE.o -MD -MP -MF ".deps/snpfile2fastPHASE.Tpo" -c -o snpfile2fastPHASE.o snpfile2fastPHASE.cc; \
	then mv -f ".deps/snpfile2fastPHASE.Tpo" ".deps/snpfile2fastPHASE.Po"; else rm -f ".deps/snpfile2fastPHASE.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT fastPHASE2snpfile.o -MD -MP -MF ".deps/fastPHASE2snpfile.Tpo" -c -o fastPHASE2snpfile.o fastPHASE2snpfile.cc; \
	then mv -f ".deps/fastPHASE2snpfile.Tpo" ".deps/fastPHASE2snpfile.Po"; else rm -f ".deps/fastPHASE2snpfile.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile2haploview.o -MD -MP -MF ".deps/snpfile2haploview.Tpo" -c -o snpfile2haploview.o snpfile2haploview.cc; \
	then mv -f ".deps/snpfile2haploview.Tpo" ".deps/snpfile2haploview.Po"; else rm -f ".deps/snpfile2haploview.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT beagle_phase_snpfile.o -MD -MP -MF ".deps/beagle_phase_snpfile.Tpo" -c -o beagle_phase_snpfile.o beagle_phase_snpfile.cc; \
	then mv -f ".deps/beagle_phase_snpfile.Tpo" ".deps/beagle_phase_snpfile.Po"; else rm -f ".deps/beagle_phase_snpfile.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT genotype_count.o -MD -MP -MF ".deps/genotype_count.Tpo" -c -o genotype_count.o genotype_count.cc; \
	then mv -f ".deps/genotype_count.Tpo" ".deps/genotype_count.Po"; else rm -f ".deps/genotype_count.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile_phenotypes.o -MD -MP -MF ".deps/snpfile_phenotypes.Tpo" -c -o snpfile_phenotypes.o snpfile_phenotypes.cc; \
	then mv -f ".deps/snpfile_phenotypes.Tpo" ".deps/snpfile_phenotypes.Po"; else rm -f ".deps/snpfile_phenotypes.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile_markers.o -MD -MP -MF ".deps/snpfile_markers.Tpo" -c -o snpfile_markers.o snpfile_markers.cc; \
	then mv -f ".deps/snpfile_markers.Tpo" ".deps/snpfile_markers.Po"; else rm -f ".deps/snpfile_markers.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile_metadata_info.o -MD -MP -MF ".deps/snpfile_metadata_info.Tpo" -c -o snpfile_metadata_info.o snpfile_metadata_info.cc; \
	then mv -f ".deps/snpfile_metadata_info.Tpo" ".deps/snpfile_metadata_info.Po"; else rm -f ".deps/snpfile_metadata_info.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile_set_metadata.o -MD -MP -MF ".deps/snpfile_set_metadata.Tpo" -c -o snpfile_set_metadata.o snpfile_set_metadata.cc; \
	then mv -f ".deps/snpfile_set_metadata.Tpo" ".deps/snpfile_set_metadata.Po"; else rm -f ".deps/snpfile_set_metadata.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile_get_metadata.o -MD -MP -MF ".deps/snpfile_get_metadata.Tpo" -c -o snpfile_get_metadata.o snpfile_get_metadata.cc; \
	then mv -f ".deps/snpfile_get_metadata.Tpo" ".deps/snpfile_get_metadata.Po"; else rm -f ".deps/snpfile_get_metadata.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT snpfile_split_on_column.o -MD -MP -MF ".deps/snpfile_split_on_column.Tpo" -c -o snpfile_split_on_column.o snpfile_split_on_column.cc; \
	then mv -f ".deps/snpfile_split_on_column.Tpo" ".deps/snpfile_split_on_column.Po"; else rm -f ".deps/snpfile_split_on_column.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT test_util.o -MD -MP -MF ".deps/test_util.Tpo" -c -o test_util.o test_util.cc; \
	then mv -f ".deps/test_util.Tpo" ".deps/test_util.Po"; else rm -f ".deps/test_util.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT matrix_test.o -MD -MP -MF ".deps/matrix_test.Tpo" -c -o matrix_test.o matrix_test.cc; \
	then mv -f ".deps/matrix_test.Tpo" ".deps/matrix_test.Po"; else rm -f ".deps/matrix_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT file_test.o -MD -MP -MF ".deps/file_test.Tpo" -c -o file_test.o file_test.cc; \
	then mv -f ".deps/file_test.Tpo" ".deps/file_test.Po"; else rm -f ".deps/file_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT file_matrix_test.o -MD -MP -MF ".deps/file_matrix_test.Tpo" -c -o file_matrix_test.o file_matrix_test.cc; \
	then mv -f ".deps/file_matrix_test.Tpo" ".deps/file_matrix_test.Po"; else rm -f ".deps/file_matrix_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT readonly_matrix_test.o -MD -MP -MF ".deps/readonly_matrix_test.Tpo" -c -o readonly_matrix_test.o readonly_matrix_test.cc; \
	then mv -f ".deps/readonly_matrix_test.Tpo" ".deps/readonly_matrix_test.Po"; else rm -f ".deps/readonly_matrix_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT archives_test.o -MD -MP -MF ".deps/archives_test.Tpo" -c -o archives_test.o archives_test.cc; \
	then mv -f ".deps/archives_test.Tpo" ".deps/archives_test.Po"; else rm -f ".deps/archives_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT metadata_access_test.o -MD -MP -MF ".deps/metadata_access_test.Tpo" -c -o metadata_access_test.o metadata_access_test.cc; \
	then mv -f ".deps/metadata_access_test.Tpo" ".deps/metadata_access_test.Po"; else rm -f ".deps/metadata_access_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT metadata_types_test.o -MD -MP -MF ".deps/metadata_types_test.Tpo" -c -o metadata_types_test.o metadata_types_test.cc; \
	then mv -f ".deps/metadata_types_test.Tpo" ".deps/metadata_types_test.Po"; else rm -f ".deps/metadata_types_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT iterators_test.o -MD -MP -MF ".deps/iterators_test.Tpo" -c -o iterators_test.o iterators_test.cc; \
	then mv -f ".deps/iterators_test.Tpo" ".deps/iterators_test.Po"; else rm -f ".deps/iterators_test.Tpo"; exit 1; fi
file_test.cc: In function 'int main()':
file_test.cc:67: warning: deprecated conversion from string constant to 'char*'
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT tabulate_test.o -MD -MP -MF ".deps/tabulate_test.Tpo" -c -o tabulate_test.o tabulate_test.cc; \
	then mv -f ".deps/tabulate_test.Tpo" ".deps/tabulate_test.Po"; else rm -f ".deps/tabulate_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT metadata_filtering_test.o -MD -MP -MF ".deps/metadata_filtering_test.Tpo" -c -o metadata_filtering_test.o metadata_filtering_test.cc; \
	then mv -f ".deps/metadata_filtering_test.Tpo" ".deps/metadata_filtering_test.Po"; else rm -f ".deps/metadata_filtering_test.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT make_test_snpfile.o -MD -MP -MF ".deps/make_test_snpfile.Tpo" -c -o make_test_snpfile.o make_test_snpfile.cc; \
	then mv -f ".deps/make_test_snpfile.Tpo" ".deps/make_test_snpfile.Po"; else rm -f ".deps/make_test_snpfile.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT test_test_snpfile.o -MD -MP -MF ".deps/test_test_snpfile.Tpo" -c -o test_test_snpfile.o test_test_snpfile.cc; \
	then mv -f ".deps/test_test_snpfile.Tpo" ".deps/test_test_snpfile.Po"; else rm -f ".deps/test_test_snpfile.Tpo"; exit 1; fi
output_archive.hh: In function 'int main()':
output_archive.hh:80: warning: 'enis.NonIntrusiveStruct::i' may be used uninitialized in this function
archives_test.cc:172: note: 'enis.NonIntrusiveStruct::i' was declared here
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT row_metadata_experiment.o -MD -MP -MF ".deps/row_metadata_experiment.Tpo" -c -o row_metadata_experiment.o row_metadata_experiment.cc; \
	then mv -f ".deps/row_metadata_experiment.Tpo" ".deps/row_metadata_experiment.Po"; else rm -f ".deps/row_metadata_experiment.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT metadata_cache_prototype.o -MD -MP -MF ".deps/metadata_cache_prototype.Tpo" -c -o metadata_cache_prototype.o metadata_cache_prototype.cc; \
	then mv -f ".deps/metadata_cache_prototype.Tpo" ".deps/metadata_cache_prototype.Po"; else rm -f ".deps/metadata_cache_prototype.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT timing.o -MD -MP -MF ".deps/timing.Tpo" -c -o timing.o timing.cc; \
	then mv -f ".deps/timing.Tpo" ".deps/timing.Po"; else rm -f ".deps/timing.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT matrix_benchmark.o -MD -MP -MF ".deps/matrix_benchmark.Tpo" -c -o matrix_benchmark.o matrix_benchmark.cc; \
	then mv -f ".deps/matrix_benchmark.Tpo" ".deps/matrix_benchmark.Po"; else rm -f ".deps/matrix_benchmark.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT matrix_benchmark_write.o -MD -MP -MF ".deps/matrix_benchmark_write.Tpo" -c -o matrix_benchmark_write.o matrix_benchmark_write.cc; \
	then mv -f ".deps/matrix_benchmark_write.Tpo" ".deps/matrix_benchmark_write.Po"; else rm -f ".deps/matrix_benchmark_write.Tpo"; exit 1; fi
if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.    -Wall -pthread -I/usr/include -g -O2  -O2 -pipe -MT matrix_benchmark_read.o -MD -MP -MF ".deps/matrix_benchmark_read.Tpo" -c -o matrix_benchmark_read.o matrix_benchmark_read.cc; \
	then mv -f ".deps/matrix_benchmark_read.Tpo" ".deps/matrix_benchmark_read.Po"; else rm -f ".deps/matrix_benchmark_read.Tpo"; exit 1; fi
rm -f libsnpfile.a
ar cru libsnpfile.a matrix.o file_matrix.o array_matrix.o byte_order_handler.o metadata.o snpfile.o 
i686-pc-linux-gnu-ranlib libsnpfile.a
i686-pc-linux-gnu-g++ -Wall -pthread -I/usr/include -g -O2  -O2 -pipe  -Wl,-O1 -o text2snpfile -L. text2snpfile.o -lboost_program_options -lboost_signals -lsnpfile 
./libsnpfile.a(file_matrix.o): In function `~ReadOnlyFileMatrixData':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:217: undefined reference to `boost::signals::connection::disconnect() const'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:218: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:218: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:217: undefined reference to `boost::signals::connection::disconnect() const'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:218: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:218: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:217: undefined reference to `boost::signals::connection::disconnect() const'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:218: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:218: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(file_matrix.o): In function `~ReadWriteFileMatrixData':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:295: undefined reference to `boost::signals::connection::disconnect() const'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:296: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:296: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:295: undefined reference to `boost::signals::connection::disconnect() const'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:296: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:296: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:295: undefined reference to `boost::signals::connection::disconnect() const'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:296: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:296: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(file_matrix.o): In function `ReadOnlyFileMatrixData':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:209: undefined reference to `boost::signals::connection::operator=(boost::signals::connection const&)'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:209: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:211: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:209: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:209: undefined reference to `boost::signals::connection::operator=(boost::signals::connection const&)'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:209: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:211: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:209: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(file_matrix.o): In function `ReadWriteFileMatrixData':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:287: undefined reference to `boost::signals::connection::operator=(boost::signals::connection const&)'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:287: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:289: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:287: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:287: undefined reference to `boost::signals::connection::operator=(boost::signals::connection const&)'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:287: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:289: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/file_matrix.cc:287: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(snpfile.o): In function `BiRC::SNPFile::SNPFile::removeMatrixDataListener(boost::signals::connection) const':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/snpfile.cc:1179: undefined reference to `boost::signals::connection::connection(boost::signals::connection const&)'
./libsnpfile.a(snpfile.o): In function `BiRC::SNPFile::SNPFile::SNPFileImpl::removeMatrixDataListener(boost::signals::connection) const':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/snpfile.cc:454: undefined reference to `boost::signals::connection::disconnect() const'
./libsnpfile.a(snpfile.o): In function `BiRC::SNPFile::SNPFile::removeMatrixDataListener(boost::signals::connection) const':
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/snpfile.cc:1179: undefined reference to `boost::signals::connection::~connection()'
/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1/snpfile.cc:1179: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(snpfile.o): In function `signal0':
/usr/include/boost/signals/signal_template.hpp:197: undefined reference to `boost::signals::detail::signal_base::signal_base(boost::function2<bool, boost::signals::detail::stored_group, boost::signals::detail::stored_group> const&, boost::any const&)'
./libsnpfile.a(snpfile.o): In function `~signal0':
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::trackable::~trackable()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::trackable::~trackable()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::trackable::~trackable()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
./libsnpfile.a(snpfile.o): In function `signal0':
/usr/include/boost/signals/signal_template.hpp:197: undefined reference to `boost::signals::detail::signal_base::signal_base(boost::function2<bool, boost::signals::detail::stored_group, boost::signals::detail::stored_group> const&, boost::any const&)'
./libsnpfile.a(snpfile.o): In function `slot<boost::function0<void> >':
/usr/include/boost/signals/slot.hpp:124: undefined reference to `boost::signals::detail::slot_base::create_connection()'
./libsnpfile.a(snpfile.o): In function `boost::signal0<void, boost::last_value<void>, int, std::less<int>, boost::function0<void> >::connect(boost::slot<boost::function0<void> > const&, boost::signals::connect_position)':
/usr/include/boost/signals/signal_template.hpp:286: undefined reference to `boost::signals::detail::signal_base_impl::connect_slot(boost::any const&, boost::signals::detail::stored_group const&, boost::shared_ptr<boost::signals::detail::slot_base::data_t>, boost::signals::connect_position)'
./libsnpfile.a(snpfile.o): In function `~data_t':
/usr/include/boost/signals/slot.hpp:32: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(snpfile.o): In function `~signal0':
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::trackable::~trackable()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
/usr/include/boost/signals/signal_template.hpp:142: undefined reference to `boost::signals::detail::signal_base::~signal_base()'
./libsnpfile.a(snpfile.o): In function `~data_t':
/usr/include/boost/signals/slot.hpp:32: undefined reference to `boost::signals::connection::~connection()'
./libsnpfile.a(snpfile.o): In function `boost::signal0<void, boost::last_value<void>, int, std::less<int>, boost::function0<void> >::operator()()':
/usr/include/boost/signals/signal_template.hpp:337: undefined reference to `boost::signals::detail::call_notification::call_notification(boost::shared_ptr<boost::signals::detail::signal_base_impl> const&)'
/usr/include/boost/signals/signal_template.hpp:354: undefined reference to `boost::signals::detail::named_slot_map::end()'
/usr/include/boost/signals/signal_template.hpp:354: undefined reference to `boost::signals::detail::named_slot_map::end()'
/usr/include/boost/signals/signal_template.hpp:354: undefined reference to `boost::signals::detail::named_slot_map::end()'
/usr/include/boost/signals/signal_template.hpp:354: undefined reference to `boost::signals::detail::named_slot_map::begin()'
/usr/include/boost/signals/signal_template.hpp:354: undefined reference to `boost::signals::detail::call_notification::~call_notification()'
/usr/include/boost/signals/signal_template.hpp:354: undefined reference to `boost::signals::detail::call_notification::~call_notification()'
collect2: ld returned 1 exit status
make[1]: *** [text2snpfile] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory `/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1'
make: *** [all] Error 2
 [31;01m*[0m ERROR: sci-biology/snpfile-2.0.1 failed:
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   55:  Called src_compile
 [31;01m*[0m   environment, line 2474:  Called _eapi2_src_compile
 [31;01m*[0m     ebuild.sh, line  635:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   		emake || die "emake failed"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-biology/snpfile-2.0.1',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-biology/snpfile-2.0.1'.
 [31;01m*[0m The complete build log is located at '/var/log/portage/build/sci-biology/snpfile-2.0.1:20091128-024009.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/snpfile-2.0.1/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-biology/snpfile-2.0.1/work/snpfile-2.0.1'