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Gentoo's Bugzilla – Attachment 202091 Details for
Bug 282509
sys-cluster/charm-6.2.0 - /usr/lib64/libck.so: undefined reference to `memory_stack_top'
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emerge sci-chemistry/namd-2.7 log
namd-2.7.log (text/plain), 90.40 KB, created by
matt
on 2009-08-23 21:58:14 UTC
(
hide
)
Description:
emerge sci-chemistry/namd-2.7 log
Filename:
MIME Type:
Creator:
matt
Created:
2009-08-23 21:58:14 UTC
Size:
90.40 KB
patch
obsolete
>sci-chemistry/namd-2.7/temp/build.log >>>> Unpacking source... >>>> Unpacking NAMD_2.7b1_Source.tar.gz to /home/.root/tmp/portage/sci-chemistry/namd-2.7/work > * Applying namd-2.7-gentoo.patch ... [ ok ] > >Selected arch file arch/Linux-x86_64-g++.arch contains: > >NAMD_ARCH = Linux-x86_64 >CHARMARCH = net-linux-x86_64 > >CXX = x86_64-pc-linux-gnu-g++ >CXXOPTS = >CC = x86_64-pc-linux-gnu-gcc >COPTS = -O2 -pipe -fomit-frame-pointer -mtune=native > >Creating directory: Linux-x86_64-g++ >Creating link: .. to .rootdir >Writing build options to Linux-x86_64-g++/Make.config >Using Charm++ build found in Make.charm: ># Set CHARMBASE to the top level charm directory. ># The config script will override this setting if there is a directory ># called charm-6.1 or charm in the NAMD base directory. > >CHARMBASE = /usr/include/charm-6.1.2 > >Linking Makefiles >Linking src, plugins, and psfgen > >Generated Linux-x86_64-g++/Make.config contains the following: > >include .rootdir/Make.charm >include .rootdir/arch/Linux-x86_64-g++.arch >CHARM = $(CHARMBASE)/$(CHARMARCH) >NAMD_PLATFORM = $(NAMD_ARCH) >include .rootdir/arch/$(NAMD_ARCH).base >include .rootdir/arch/$(NAMD_ARCH).tcl >include .rootdir/arch/$(NAMD_ARCH).fftw > >You are ready to run make in directory Linux-x86_64-g++ now. >>>> Source unpacked in /home/.root/tmp/portage/sci-chemistry/namd-2.7/work >>>> Compiling source in /home/.root/tmp/portage/sci-chemistry/namd-2.7/work/NAMD_2.7b1_Source ... >make -j5 >mkdir inc >mkdir obj >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/common.o -c src/common.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/dcdlib.o -c src/dcdlib.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/erf.o -c src/erf.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/fitrms.o -c src/fitrms.C >/usr/bin/charmc src/main.ci >/usr/bin/charmc src/WorkDistrib.ci >/usr/bin/charmc src/ReductionMgr.ci >/usr/bin/charmc src/PatchMgr.ci >src/common.C: In function 'void NAMD_err(const char*)': >src/common.C:92: warning: deprecated conversion from string constant to 'char*' >src/common.C: In function 'void NAMD_backup_file(const char*, const char*)': >src/common.C:131: warning: deprecated conversion from string constant to 'char*' >/usr/bin/charmc src/ProxyMgr.ci >mv WorkDistrib.def.h inc >mv WorkDistrib.decl.h inc >/usr/bin/charmc src/Node.ci >mv main.def.h inc >mv main.decl.h inc >/usr/bin/charmc src/LdbCoordinator.ci >mv ReductionMgr.def.h inc >mv ReductionMgr.decl.h inc >/usr/bin/charmc src/NamdCentLB.ci >mv PatchMgr.def.h inc >mv PatchMgr.decl.h inc >/usr/bin/charmc src/NamdNborLB.ci >mv Node.def.h inc >mv Node.decl.h inc >/usr/bin/charmc src/ComputeMgr.ci >mv LdbCoordinator.def.h inc >mv LdbCoordinator.decl.h inc >/usr/bin/charmc src/ComputePmeMgr.ci >mv ProxyMgr.def.h inc >mv ProxyMgr.decl.h inc >/usr/bin/charmc src/OptPme.ci >mv NamdCentLB.def.h inc >mv NamdCentLB.decl.h inc >/usr/bin/charmc src/fftlib.ci >mv NamdNborLB.def.h inc >mv NamdNborLB.decl.h inc >/usr/bin/charmc src/ComputeExtMgr.ci >mv ComputeMgr.def.h inc >mv ComputeMgr.decl.h inc >/usr/bin/charmc src/CollectionMgr.ci >mv ComputeExtMgr.def.h inc >mv ComputeExtMgr.decl.h inc >/usr/bin/charmc src/CollectionMaster.ci >mv OptPmeMgr.def.h inc >mv OptPmeMgr.decl.h inc >/usr/bin/charmc src/BroadcastMgr.ci >mv ComputePmeMgr.def.h inc >mv ComputePmeMgr.decl.h inc >/usr/bin/charmc src/Sync.ci >mv CollectionMgr.def.h inc >mv CollectionMgr.decl.h inc >/usr/bin/charmc src/AtomsDisInfo.ci >mv BroadcastMgr.def.h inc >mv BroadcastMgr.decl.h inc >/usr/bin/charmc src/FileIO.ci >mv PmeFFTLib.def.h inc >mv Sync.def.h inc >mv PmeFFTLib.decl.h inc >mv Sync.decl.h inc >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/mainfunc.o -c src/mainfunc.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/memusage.o -c src/memusage.C >mv CollectionMaster.def.h inc >mv CollectionMaster.decl.h inc >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/strlib.o -c src/strlib.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/AlgSeven.o -c src/AlgSeven.C >mv AtomsDisInfo.def.h inc >mv AtomsDisInfo.decl.h inc >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/AlgRecBisection.o -c src/AlgRecBisection.C >mv FileIO.def.h inc >mv FileIO.decl.h inc >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/AlgNbor.o -c src/AlgNbor.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/AtomMap.o -c src/AtomMap.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/BackEnd.o -c src/BackEnd.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/BroadcastMgr.o -c src/BroadcastMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/BroadcastClient.o -c src/BroadcastClient.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/CollectionMaster.o -c src/CollectionMaster.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/CollectionMgr.o -c src/CollectionMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Communicate.o -c src/Communicate.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Compute.o -c src/Compute.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeAngles.o -c src/ComputeAngles.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeBonds.o -c src/ComputeBonds.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeConsForce.o -c src/ComputeConsForce.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeDPME.o -c src/ComputeDPME.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeEField.o -c src/ComputeEField.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeEwald.o -c src/ComputeEwald.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeExt.o -c src/ComputeExt.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeImpropers.o -c src/ComputeImpropers.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeGlobal.o -c src/ComputeGlobal.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeGridForce.o -c src/ComputeGridForce.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeMap.o -c src/ComputeMap.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeMgr.o -c src/ComputeMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputePatch.o -c src/ComputePatch.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputePatchPair.o -c src/ComputePatchPair.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputePme.o -c src/ComputePme.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/OptPme.o -c src/OptPme.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeRestraints.o -c src/ComputeRestraints.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeStir.o -c src/ComputeStir.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ComputeTclBC.o -c src/ComputeTclBC.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ConfigList.o -c src/ConfigList.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Controller.o -c src/Controller.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ccsinterface.o -c src/ccsinterface.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/DataStream.o -c src/DataStream.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/DumpBench.o -c src/DumpBench.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C >src/FreeEnergyRestrain.C: In member function 'void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)': >src/FreeEnergyRestrain.C:205: warning: deprecated conversion from string constant to 'char*' >src/FreeEnergyRestrain.C:213: warning: deprecated conversion from string constant to 'char*' >src/FreeEnergyRestrain.C:218: warning: deprecated conversion from string constant to 'char*' >src/FreeEnergyRestrain.C: In member function 'void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)': >src/FreeEnergyRestrain.C:247: warning: deprecated conversion from string constant to 'char*' >src/FreeEnergyRestrain.C:251: warning: deprecated conversion from string constant to 'char*' >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMaster.o -c src/GlobalMaster.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_wrapmode(void*, Tcl_Interp*, int, char**)': >src/ComputeTclBC.C:141: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:152: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_cleardrops(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:162: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_dropatom(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:175: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:180: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_nextatom(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:192: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcoord(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:232: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:237: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcell(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:268: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getmass(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:311: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:316: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcharge(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:328: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:333: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getid(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:345: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:350: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addforce(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:362: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:374: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:380: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addenergy(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/ComputeTclBC.C:394: warning: deprecated conversion from string constant to 'char*' >src/ComputeTclBC.C:400: warning: deprecated conversion from string constant to 'char*' >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarmodule.o -c src/colvarmodule.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarparse.o -c src/colvarparse.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvar.o -c src/colvar.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarvalue.o -c src/colvarvalue.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarbias.o -c src/colvarbias.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarbias_abf.o -c src/colvarbias_abf.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarbias_meta.o -c src/colvarbias_meta.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvaratoms.o -c src/colvaratoms.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarcomp.o -c src/colvarcomp.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GridForceGrid.o -c src/GridForceGrid.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/GromacsTopFile.o -c src/GromacsTopFile.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/heap.o -c src/heap.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/HomePatch.o -c src/HomePatch.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/IMDOutput.o -c src/IMDOutput.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/InfoStream.o -c src/InfoStream.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/LdbCoordinator.o -c src/LdbCoordinator.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/LJTable.o -c src/LJTable.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Measure.o -c src/Measure.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/MGridforceParams.o -c src/MGridforceParams.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/MStream.o -c src/MStream.C >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_atomid(void*, Tcl_Interp*, int, char**)': >src/GlobalMasterTcl.C:44: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C:58: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addatom(void*, Tcl_Interp*, int, char**)': >src/GlobalMasterTcl.C:74: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addgroup(void*, Tcl_Interp*, int, char**)': >src/GlobalMasterTcl.C:100: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_reconfig(void*, Tcl_Interp*, int, char**)': >src/GlobalMasterTcl.C:152: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_clearconfig(void*, Tcl_Interp*, int, char**)': >src/GlobalMasterTcl.C:165: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_getstep(void*, Tcl_Interp*, int, char**)': >src/GlobalMasterTcl.C:181: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadforces(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/GlobalMasterTcl.C:195: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadtotalforces(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/GlobalMasterTcl.C:267: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadcoords(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/GlobalMasterTcl.C:309: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadmasses(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/GlobalMasterTcl.C:365: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addforce(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/GlobalMasterTcl.C:408: warning: deprecated conversion from string constant to 'char*' >src/GlobalMasterTcl.C:427: warning: deprecated conversion from string constant to 'char*' >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Molecule.o -c src/Molecule.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Molecule2.o -c src/Molecule2.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/NamdCentLB.o -c src/NamdCentLB.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/NamdNborLB.o -c src/NamdNborLB.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/NamdState.o -c src/NamdState.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/NamdOneTools.o -c src/NamdOneTools.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Node.o -c src/Node.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Output.o -c src/Output.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Parameters.o -c src/Parameters.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ParseOptions.o -c src/ParseOptions.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Patch.o -c src/Patch.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PatchMgr.o -c src/PatchMgr.C >src/Measure.C: In function 'int Tcl_loadCoords(void*, Tcl_Interp*, int, Tcl_Obj* const*)': >src/Measure.C:114: warning: deprecated conversion from string constant to 'char*' >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PatchMap.o -c src/PatchMap.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PDB.o -c src/PDB.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PDBData.o -c src/PDBData.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PmeBase.o -c src/PmeBase.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PmeKSpace.o -c src/PmeKSpace.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PmeRealSpace.o -c src/PmeRealSpace.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ProxyMgr.o -c src/ProxyMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ProxyPatch.o -c src/ProxyPatch.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Rebalancer.o -c src/Rebalancer.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/RecBisection.o -c src/RecBisection.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ReductionMgr.o -c src/ReductionMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/RefineOnly.o -c src/RefineOnly.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/RefineTorusLB.o -c src/RefineTorusLB.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/ScriptTcl.o -c src/ScriptTcl.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Sequencer.o -c src/Sequencer.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Set.o -c src/Set.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Settle.o -c src/Settle.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/SimParameters.o -c src/SimParameters.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/Sync.o -c src/Sync.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/TclCommands.o -c src/TclCommands.C >src/SimParameters.C: In member function 'void SimParameters::parse_mgrid_params(ConfigList*)': >src/SimParameters.C:4039: warning: deprecated conversion from string constant to 'char*' >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/TorusLB.o -c src/TorusLB.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/WorkDistrib.o -c src/WorkDistrib.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/pub3dfft.o -c src/pub3dfft.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/vmdsock.o -c src/vmdsock.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/parm.o -c src/parm.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/imd.o -c src/imd.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/CompressPsf.o -c src/CompressPsf.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/PluginIOMgr.o -c src/PluginIOMgr.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/AtomsDisInfo.o -c src/AtomsDisInfo.C >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/FileIO.o -c src/FileIO.C >src/parm.C: In member function 'int parm::readparm(char*)': >src/parm.C:184: warning: deprecated conversion from string constant to 'char*' >src/parm.C:194: warning: deprecated conversion from string constant to 'char*' >src/parm.C:318: warning: deprecated conversion from string constant to 'char*' >src/parm.C:332: warning: deprecated conversion from string constant to 'char*' >src/parm.C:350: warning: deprecated conversion from string constant to 'char*' >src/parm.C:368: warning: deprecated conversion from string constant to 'char*' >src/parm.C:389: warning: deprecated conversion from string constant to 'char*' >src/parm.C:410: warning: deprecated conversion from string constant to 'char*' >src/parm.C:431: warning: deprecated conversion from string constant to 'char*' >src/parm.C:443: warning: deprecated conversion from string constant to 'char*' >src/parm.C:465: warning: deprecated conversion from string constant to 'char*' >src/parm.C:483: warning: deprecated conversion from string constant to 'char*' >src/parm.C:501: warning: deprecated conversion from string constant to 'char*' >src/parm.C:519: warning: deprecated conversion from string constant to 'char*' >src/parm.C:537: warning: deprecated conversion from string constant to 'char*' >src/parm.C:555: warning: deprecated conversion from string constant to 'char*' >src/parm.C:573: warning: deprecated conversion from string constant to 'char*' >src/parm.C:591: warning: deprecated conversion from string constant to 'char*' >src/parm.C:610: warning: deprecated conversion from string constant to 'char*' >src/parm.C:629: warning: deprecated conversion from string constant to 'char*' >src/parm.C:650: warning: deprecated conversion from string constant to 'char*' >src/parm.C:682: warning: deprecated conversion from string constant to 'char*' >src/parm.C:715: warning: deprecated conversion from string constant to 'char*' >src/parm.C:750: warning: deprecated conversion from string constant to 'char*' >src/parm.C:786: warning: deprecated conversion from string constant to 'char*' >src/parm.C:823: warning: deprecated conversion from string constant to 'char*' >src/parm.C:855: warning: deprecated conversion from string constant to 'char*' >src/parm.C:876: warning: deprecated conversion from string constant to 'char*' >src/parm.C:894: warning: deprecated conversion from string constant to 'char*' >src/parm.C:912: warning: deprecated conversion from string constant to 'char*' >src/parm.C:933: warning: deprecated conversion from string constant to 'char*' >src/parm.C:945: warning: deprecated conversion from string constant to 'char*' >src/parm.C:957: warning: deprecated conversion from string constant to 'char*' >src/parm.C:980: warning: deprecated conversion from string constant to 'char*' >src/parm.C:1009: warning: deprecated conversion from string constant to 'char*' >src/parm.C:1034: warning: deprecated conversion from string constant to 'char*' >src/parm.C:1050: warning: deprecated conversion from string constant to 'char*' >x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -fomit-frame-pointer -mtune=native -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c >x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -fomit-frame-pointer -mtune=native -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c >x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -fomit-frame-pointer -mtune=native -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c >x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -fomit-frame-pointer -mtune=native -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/tcl_main.o -c sb/src/tcl_main.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/tcl_psfgen.o -c sb/src/tcl_psfgen.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/charmm_file.o -c sb/src/charmm_file.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/charmm_parse_topo_defs.o -c sb/src/charmm_parse_topo_defs.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/extract_alias.o -c sb/src/extract_alias.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/hash.o -c sb/src/hash.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/hasharray.o -c sb/src/hasharray.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/memarena.o -c sb/src/memarena.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/pdb_file.o -c sb/src/pdb_file.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/pdb_file_extract.o -c sb/src/pdb_file_extract.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/psf_file.o -c sb/src/psf_file.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/psf_file_extract.o -c sb/src/psf_file_extract.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/topo_defs.o -c sb/src/topo_defs.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/topo_mol.o -c sb/src/topo_mol.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/topo_mol_output.o -c sb/src/topo_mol_output.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/topo_mol_pluginio.o -c sb/src/topo_mol_pluginio.c >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/stringhash.o -c sb/src/stringhash.c >x86_64-pc-linux-gnu-gcc -Isrc -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o flipdcd src/flipdcd.c || \ > echo "#!/bin/sh\necho unavailable on this platform" > flipdcd; \ > chmod +x flipdcd >x86_64-pc-linux-gnu-gcc -Isrc -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o flipbinpdb src/flipbinpdb.c || \ > echo "#!/bin/sh\necho unavailable on this platform" > flipbinpdb; \ > chmod +x flipbinpdb >src/flipdcd.c: In function 'main': >src/flipdcd.c:39: warning: incompatible implicit declaration of built-in function 'exit' >x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/main.o -c src/main.C >src/flipbinpdb.c: In function 'main': >src/flipbinpdb.c:28: warning: incompatible implicit declaration of built-in function 'exit' >src/flipbinpdb.c:33: warning: incompatible implicit declaration of built-in function 'exit' >src/flipbinpdb.c:38: warning: incompatible implicit declaration of built-in function 'exit' >src/flipbinpdb.c:45: warning: incompatible implicit declaration of built-in function 'exit' >src/flipbinpdb.c:51: warning: incompatible implicit declaration of built-in function 'exit' >src/flipbinpdb.c:62: warning: incompatible implicit declaration of built-in function 'exit' >x86_64-pc-linux-gnu-gcc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/usr/include -DNAMD_TCL -O2 -pipe -fomit-frame-pointer -mtune=native -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o psfgen obj/tcl_main.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o obj/dcdplugin.o obj/jsplugin.o obj/pdbplugin.o obj/psfplugin.o -L/usr/lib64 -ltcl8.5 -ldl -lm >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_config(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:199: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_param(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:213: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:219: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:227: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitvels(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:246: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_rescalevels(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:263: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_run(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:280: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:288: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:293: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_minimize(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:312: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:320: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:325: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_moveallby(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:345: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:357: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_move(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:376: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:384: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:394: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_output(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:422: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C:426: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_measure(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:460: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpoint(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:475: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_revert(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:489: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_callback(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:502: warning: deprecated conversion from string constant to 'char*' >src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitatoms(void*, Tcl_Interp*, int, char**)': >src/ScriptTcl.C:534: warning: deprecated conversion from string constant to 'char*' >rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"root\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_VERSION=\"2.7b1\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -o obj/buildinfo.o -c obj/buildinfo.C >const char *namd_build_date = "Sun Aug 23 22:48:29 Local time zone must be set--see zic manual page 2009"; >const char *namd_build_user = "root"; >const char *namd_build_machine = "localhost"; >/usr/bin/charmc -verbose -ld++-option \ > "-I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Iinc -Isrc " \ > -module NeighborLB -module commlib -language charm++ \ > obj/buildinfo.o \ > obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedCUDA.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvarmodule.o obj/colvarparse.o obj/colvar.o obj/colvarvalue.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_meta.o obj/colvaratoms.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvarproxy_namd.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeBase.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/AtomsDisInfo.o obj/FileIO.o \ > \ > \ > \ > \ > -L/usr/lib64 -ltcl8.5 -ldl \ > -L/usr/lib64 -lsrfftw -lsfftw \ > obj/dcdplugin.o obj/jsplugin.o obj/pdbplugin.o obj/psfplugin.o \ > \ > -lm -o namd2 >Verbose mode set >Adding file obj/buildinfo.o... >Adding file obj/common.o... >Adding file obj/dcdlib.o... >Adding file obj/erf.o... >Adding file obj/fitrms.o... >Adding file obj/main.o... >Adding file obj/mainfunc.o... >Adding file obj/memusage.o... >Adding file obj/strlib.o... >Adding file obj/AlgSeven.o... >Adding file obj/AlgRecBisection.o... >Adding file obj/AlgNbor.o... >Adding file obj/AtomMap.o... >Adding file obj/BackEnd.o... >Adding file obj/BroadcastMgr.o... >Adding file obj/BroadcastClient.o... >Adding file obj/CollectionMaster.o... >Adding file obj/CollectionMgr.o... >Adding file obj/Communicate.o... >Adding file obj/Compute.o... >Adding file obj/ComputeAngles.o... >Adding file obj/ComputeBonds.o... >Adding file obj/ComputeConsForce.o... >Adding file obj/ComputeConsForceMsgs.o... >Adding file obj/ComputeCrossterms.o... >Adding file obj/ComputeCylindricalBC.o... >Adding file obj/ComputeDihedrals.o... >Adding file obj/ComputeDPME.o... >Adding file obj/ComputeDPMEMsgs.o... >Adding file obj/ComputeDPMTA.o... >Adding file obj/ComputeEField.o... >Adding file obj/ComputeEwald.o... >Adding file obj/ComputeExt.o... >Adding file obj/ComputeFullDirect.o... >Adding file obj/ComputeHomePatch.o... >Adding file obj/ComputeHomePatches.o... >Adding file obj/ComputeImpropers.o... >Adding file obj/ComputeGlobal.o... >Adding file obj/ComputeGlobalMsgs.o... >Adding file obj/ComputeGridForce.o... >Adding file obj/ComputeMap.o... >Adding file obj/ComputeMgr.o... >Adding file obj/ComputeNonbondedSelf.o... >Adding file obj/ComputeNonbondedPair.o... >Adding file obj/ComputeNonbondedUtil.o... >Adding file obj/ComputeNonbondedStd.o... >Adding file obj/ComputeNonbondedFEP.o... >Adding file obj/ComputeNonbondedLES.o... >Adding file obj/ComputeNonbondedPProf.o... >Adding file obj/ComputeNonbondedCUDA.o... >Adding file obj/ComputePatch.o... >Adding file obj/ComputePatchPair.o... >Adding file obj/ComputePme.o... >Adding file obj/OptPme.o... >Adding file obj/OptPmeRealSpace.o... >Adding file obj/ComputeRestraints.o... >Adding file obj/ComputeSphericalBC.o... >Adding file obj/ComputeStir.o... >Adding file obj/ComputeTclBC.o... >Adding file obj/ConfigList.o... >Adding file obj/Controller.o... >Adding file obj/ccsinterface.o... >Adding file obj/DataStream.o... >Adding file obj/DumpBench.o... >Adding file obj/FreeEnergyAssert.o... >Adding file obj/FreeEnergyGroup.o... >Adding file obj/FreeEnergyLambda.o... >Adding file obj/FreeEnergyLambdMgr.o... >Adding file obj/FreeEnergyParse.o... >Adding file obj/FreeEnergyRestrain.o... >Adding file obj/FreeEnergyRMgr.o... >Adding file obj/FreeEnergyVector.o... >Adding file obj/GlobalMaster.o... >Adding file obj/GlobalMasterServer.o... >Adding file obj/GlobalMasterTest.o... >Adding file obj/GlobalMasterIMD.o... >Adding file obj/GlobalMasterTcl.o... >Adding file obj/GlobalMasterSMD.o... >Adding file obj/GlobalMasterTMD.o... >Adding file obj/GlobalMasterFreeEnergy.o... >Adding file obj/GlobalMasterEasy.o... >Adding file obj/GlobalMasterMisc.o... >Adding file obj/colvarmodule.o... >Adding file obj/colvarparse.o... >Adding file obj/colvar.o... >Adding file obj/colvarvalue.o... >Adding file obj/colvarbias.o... >Adding file obj/colvarbias_abf.o... >Adding file obj/colvarbias_meta.o... >Adding file obj/colvaratoms.o... >Adding file obj/colvarcomp.o... >Adding file obj/colvarcomp_angles.o... >Adding file obj/colvarcomp_coordnums.o... >Adding file obj/colvarcomp_distances.o... >Adding file obj/colvarcomp_protein.o... >Adding file obj/colvarcomp_rotations.o... >Adding file obj/colvarproxy_namd.o... >Adding file obj/GridForceGrid.o... >Adding file obj/GromacsTopFile.o... >Adding file obj/heap.o... >Adding file obj/HomePatch.o... >Adding file obj/IMDOutput.o... >Adding file obj/InfoStream.o... >Adding file obj/LdbCoordinator.o... >Adding file obj/LJTable.o... >Adding file obj/Measure.o... >Adding file obj/MGridforceParams.o... >Adding file obj/MStream.o... >Adding file obj/MigrateAtomsMsg.o... >Adding file obj/Molecule.o... >Adding file obj/Molecule2.o... >Adding file obj/NamdCentLB.o... >Adding file obj/NamdNborLB.o... >Adding file obj/NamdState.o... >Adding file obj/NamdOneTools.o... >Adding file obj/Node.o... >Adding file obj/Output.o... >Adding file obj/Parameters.o... >Adding file obj/ParseOptions.o... >Adding file obj/Patch.o... >Adding file obj/PatchMgr.o... >Adding file obj/PatchMap.o... >Adding file obj/PDB.o... >Adding file obj/PDBData.o... >Adding file obj/PmeBase.o... >Adding file obj/PmeKSpace.o... >Adding file obj/PmeRealSpace.o... >Adding file obj/ProcessorPrivate.o... >Adding file obj/ProxyMgr.o... >Adding file obj/ProxyPatch.o... >Adding file obj/Rebalancer.o... >Adding file obj/RecBisection.o... >Adding file obj/ReductionMgr.o... >Adding file obj/RefineOnly.o... >Adding file obj/RefineTorusLB.o... >Adding file obj/ScriptTcl.o... >Adding file obj/Sequencer.o... >Adding file obj/Set.o... >Adding file obj/Settle.o... >Adding file obj/SimParameters.o... >Adding file obj/Sync.o... >Adding file obj/TclCommands.o... >Adding file obj/TorusLB.o... >Adding file obj/WorkDistrib.o... >Adding file obj/pub3dfft.o... >Adding file obj/vmdsock.o... >Adding file obj/parm.o... >Adding file obj/imd.o... >Adding file obj/CompressPsf.o... >Adding file obj/PluginIOMgr.o... >Adding file obj/AtomsDisInfo.o... >Adding file obj/FileIO.o... >Adding file obj/dcdplugin.o... >Adding file obj/jsplugin.o... >Adding file obj/pdbplugin.o... >Adding file obj/psfplugin.o... >charmc> ----------- Module dependency search ------------ >charmc> ----------- Module dependency search complete ------------ >Adding registration for module NeighborLB >Adding registration for module commlib >charmc: Executing g++ -fPIC -m64 -D__CHARMC__=1 -c moduleinit17270.C -o moduleinit17270.o >charmc> All libraries are: -L/usr/lib64 -I/usr/include/charm-6.1.2 /usr/lib64/libldb-rand.o obj/buildinfo.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedCUDA.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvarmodule.o obj/colvarparse.o obj/colvar.o obj/colvarvalue.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_meta.o obj/colvaratoms.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvarproxy_namd.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeBase.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/AtomsDisInfo.o obj/FileIO.o obj/dcdplugin.o obj/jsplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit17270.o -lmoduleNeighborLB -lmodulecommlib /usr/lib64/libmemory-default.o /usr/lib64/libthreads-default.o -lck -lconv-cplus-y -lconv-core -lconv-util -lckqt -ldl -ltcl8.5 -ldl -lsrfftw -lsfftw -lm -lmoduleNeighborLB -lmodulecommlib -lm >charmc: Executing g++ -fPIC -m64 -m64 -rdynamic -L/usr/lib64 -L/usr/lib64 -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Iinc -Isrc -o namd2 -L/usr/lib64 -I/usr/include/charm-6.1.2 /usr/lib64/libldb-rand.o obj/buildinfo.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedCUDA.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvarmodule.o obj/colvarparse.o obj/colvar.o obj/colvarvalue.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_meta.o obj/colvaratoms.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvarproxy_namd.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeBase.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/AtomsDisInfo.o obj/FileIO.o obj/dcdplugin.o obj/jsplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit17270.o -lmoduleNeighborLB -lmodulecommlib /usr/lib64/libmemory-default.o /usr/lib64/libthreads-default.o -lck -lconv-cplus-y -lconv-core -lconv-util -lckqt -ldl -ltcl8.5 -ldl -lsrfftw -lsfftw -lm -lmoduleNeighborLB -lmodulecommlib -lm >/usr/lib64/libck.so: undefined reference to `memory_stack_top' >collect2: ld returned 1 exit status >Fatal Error by charmc in directory /home/.root/tmp/portage/sci-chemistry/namd-2.7/work/NAMD_2.7b1_Source/Linux-x86_64-g++ > Command g++ -fPIC -m64 -m64 -rdynamic -L/usr/lib64 -L/usr/lib64 -I/usr/include/charm-6.1.2 -DCMK_OPTIMIZE=1 -Iinc -Isrc -o namd2 -L/usr/lib64 -I/usr/include/charm-6.1.2 /usr/lib64/libldb-rand.o obj/buildinfo.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedCUDA.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvarmodule.o obj/colvarparse.o obj/colvar.o obj/colvarvalue.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_meta.o obj/colvaratoms.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvarproxy_namd.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeBase.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/AtomsDisInfo.o obj/FileIO.o obj/dcdplugin.o obj/jsplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit17270.o -lmoduleNeighborLB -lmodulecommlib /usr/lib64/libmemory-default.o /usr/lib64/libthreads-default.o -lck -lconv-cplus-y -lconv-core -lconv-util -lckqt -ldl -ltcl8.5 -ldl -lsrfftw -lsfftw -lm -lmoduleNeighborLB -lmodulecommlib -lm returned error code 1 >charmc exiting... >rm -f moduleinit17270.C moduleinit17270.o >make: *** [namd2] Error 1 > * > * ERROR: sci-chemistry/namd-2.7 failed. > * Call stack: > * ebuild.sh, line 49: Called src_compile > * environment, line 2591: Called die > * The specific snippet of code: > * emake || die "Failed to build namd" > * The die message: > * Failed to build namd > * > * If you need support, post the topmost build error, and the call stack if relevant. > * A complete build log is located at '/home/.root/tmp/portage/sci-chemistry/namd-2.7/temp/build.log'. > * The ebuild environment file is located at '/home/.root/tmp/portage/sci-chemistry/namd-2.7/temp/environment'. > *
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