Build log

seaview-20071113:20090823-123147.log (text/plain), 11.34 KB, created by Diego Elio Pettenò (RETIRED) on 2009-08-23 12:35:20 UTC

>>> Unpacking source...
>>> Unpacking seaview-20071113.tar.gz to /var/tmp/portage/sci-biology/seaview-20071113/work
>>> Source unpacked in /var/tmp/portage/sci-biology/seaview-20071113/work
>>> Compiling source in /var/tmp/portage/sci-biology/seaview-20071113/work ...
make -j14 
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe seaview.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe custom.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe use_mase_files.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe regions.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe load_seq.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe align.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe xfmatpt.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe comlines.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe chooser_plus.cxx
i686-pc-linux-gnu-g++ -Dunix  -c -O2 -I/usr/include/fltk-1.1 -I/usr/include/X11R6  -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.help\" -I../PDFlib-Lite-6.0.1/libs/pdflib -O2 -pipe resource.cxx
seaview.cxx:190: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:190: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:190: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:190: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:190: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:190: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:191: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:191: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:191: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:191: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:191: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:191: warning: deprecated conversion from string constant to 'char*'
seaview.cxx: In function 'int main(int, char**)':
seaview.cxx:253: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:255: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:256: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:258: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:259: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:259: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:260: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:261: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:262: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:262: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:265: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:270: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:270: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:274: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:274: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:275: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:275: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:276: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:276: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:283: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:283: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:287: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:294: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:295: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:353: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:364: warning: ignoring return value of 'char* mktemp(char*)', declared with attribute warn_unused_result
seaview.cxx: In function 'char* extract_filename(char*)':
seaview.cxx:448: warning: deprecated conversion from string constant to 'char*'
seaview.cxx: In function 'void edit_menu_callback(Fl_Widget*, long int)':
seaview.cxx:2119: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2165: warning: deprecated conversion from string constant to 'char*'
seaview.cxx: In function 'void file_menu_callback(Fl_Widget*, void*)':
seaview.cxx:2818: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2822: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2826: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2830: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2834: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2838: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2842: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2874: warning: format not a string literal and no format arguments
seaview.cxx:2917: warning: deprecated conversion from string constant to 'char*'
seaview.cxx:2926: warning: format not a string literal and no format arguments
seaview.cxx:2952: warning: format not a string literal and no format arguments
seaview.cxx: In function 'void handle_paste(SEA_VIEW*, const char*, int)':
seaview.cxx:3927: error: invalid conversion from 'const char*' to 'char*'
make: *** [seaview.o] Error 1
make: *** Waiting for unfinished jobs....
load_seq.cxx: In function 'void load_seq_dialog(SEA_VIEW*)':
load_seq.cxx:210: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:215: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:241: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:245: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:250: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:255: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:260: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx: In function 'void edit_comments_dialog(SEA_VIEW*)':
load_seq.cxx:424: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:428: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:432: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx: In function 'void edit_sequence_dialog(SEA_VIEW*)':
load_seq.cxx:493: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:497: warning: deprecated conversion from string constant to 'char*'
load_seq.cxx:501: warning: deprecated conversion from string constant to 'char*'
regions.cxx: In function 'char* create_species_set(SEA_VIEW*, char*)':
regions.cxx:829: warning: deprecated conversion from string constant to 'char*'
regions.cxx:833: warning: deprecated conversion from string constant to 'char*'
regions.cxx:838: warning: deprecated conversion from string constant to 'char*'
regions.cxx:842: warning: deprecated conversion from string constant to 'char*'
align.cxx: In function 'int calc_msa_command(SEA_VIEW*, char*, char*)':
align.cxx:545: warning: format not a string literal and no format arguments
align.cxx: In function 'void cre_align_opt_menu(SEA_VIEW*, Fl_Menu_Button*, props_menu_parts*)':
align.cxx:598: warning: deprecated conversion from string constant to 'char*'
align.cxx:617: warning: deprecated conversion from string constant to 'char*'
align.cxx: In function 'void delete_align_callback(Fl_Widget*, void*)':
align.cxx:736: warning: deprecated conversion from string constant to 'char*'
align.cxx: In function 'void init_msa_algos()':
align.cxx:872: warning: deprecated conversion from string constant to 'char*'
use_mase_files.cxx: In function 'int output_next_res_from_region(char*, int, list_segments**, int*, FILE*, int, int)':
use_mase_files.cxx:747: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result
xfmatpt.cxx: In function 'FD_matpt* create_form_matpt()':
xfmatpt.cxx:172: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:179: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:186: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:194: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:199: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:205: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:251: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:256: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx:269: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx: In function 'void err_message(char*)':
xfmatpt.cxx:401: warning: format not a string literal and no format arguments
xfmatpt.cxx: In function 'char* check_alloc(int, int)':
xfmatpt.cxx:409: warning: deprecated conversion from string constant to 'char*'
xfmatpt.cxx: In member function 'virtual void matpt_panel::draw()':
xfmatpt.cxx:632: warning: format not a string literal and no format arguments
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-biology/seaview-20071113 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line 1006:  Called _eapi1_src_compile
 [31;01m*[0m               ebuild.sh, line  623:  Called _eapi2_src_compile
 [31;01m*[0m               ebuild.sh, line  634:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   		emake || die "emake failed"
 [31;01m*[0m  The die message:
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-biology/seaview-20071113:20090823-123147.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/seaview-20071113/temp/environment'.
 [31;01m*[0m