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Gentoo's Bugzilla – Attachment 201591 Details for
Bug 278571
sci-biology/mafft-6.707: new version request
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mafft-6.709.ebuild
mafft-6.709.ebuild (text/plain), 1.90 KB, created by
Martin Mokrejš
on 2009-08-18 10:30:33 UTC
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Description:
mafft-6.709.ebuild
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Creator:
Martin Mokrejš
Created:
2009-08-18 10:30:33 UTC
Size:
1.90 KB
patch
obsolete
># Copyright 1999-2008 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-6.240-r1.ebuild,v 1.2 2008/09/23 15:27:54 mr_bones_ Exp $ > >EAPI="2" > >inherit toolchain-funcs multilib > >DESCRIPTION="Multiple sequence alignments using a variety of algorithms" >HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/" >SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}-with-extensions-src.tgz" > >LICENSE="free-noncomm" >SLOT="0" >KEYWORDS="~x86 ~amd64" >IUSE="" > >DEPEND="" >RDEPEND="" > >S="${WORKDIR}/${P}-with-extensions" > >src_unpack() { > unpack ${A} >} > >src_compile() { > emake -C core \ > PREFIX="/usr" \ > CC="$(tc-getCC)" \ > CFLAGS="${CFLAGS}" \ > || die "make core failed" > emake -C extensions \ > PREFIX="/usr" \ > CXX="$(tc-getCXX)" \ > CXXFLAGS="${CXXFLAGS} -I. -IprobconsRNA -Ivienna" \ > || die "make extensions failed" >} > >src_install() { > dobin core/mafft core/mafft-homologs.rb || die "dobin failed" > > echo "Creating symlinks to mafft executable" > pushd "${D}"usr/bin > for f in linsi ginsi fftns fftnsi nwns nwnsi einsi mafft-linsi mafft-ginsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-einsi mafft-xinsi mafft-qinsi; do ln -s mafft $f; done > ln -s ../lib/mafft/mafft-profile . > ln -s ../lib/mafft/mafft-distance . > popd > > cd core > insinto usr/lib/mafft > doins dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign pair2hat3s multi2hat3s rnatest pairash splittbfast disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap countlen score getlag dndpre dndpre2 setcore || die "Cannot install executables into /usr/lib/mafft" > doman mafft.1 mafft-homologs.1 || die "Cannot install man pages" > > cd ../extensions > doins mxscarnamod || die "Cannot install modifiedmxscarna binary" > > echo "Fixing the permissions on executables" > chmod a+rx "${D}"usr/lib/mafft/* > > cd .. > dodoc readme || die "Installing readme file failed" >} >
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