# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-6.240-r1.ebuild,v 1.2 2008/09/23 15:27:54 mr_bones_ Exp $

inherit toolchain-funcs multilib eutils

DESCRIPTION="Multiple sequence alignments using a variety of algorithms"
HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/"
SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}-with-extensions-src.tgz"
LICENSE="free-noncomm"
SLOT="0"
KEYWORDS="~x86"
IUSE=""
RDEPEND=""
DEPEND="${RDEPEND}"

src_unpack() {
	unpack ${A}
}

src_compile() {
	cd "${S}-with-extensions/core"
	emake \
		PREFIX="/usr/$(get_libdir)/${PN}" \
		CC="$(tc-getCC)" \
		CFLAGS="${CFLAGS}" \
		|| die "make core failed"

	cd ../extensions
	emake \
		PREFIX="/usr/$(get_libdir)/${PN}" \
		CXX="$(tc-getCXX)" \
		CXXFLAGS="${CXXFLAGS}" \
		|| die "make extensions failed"
}

src_install() {
	cd "${S}-with-extensions" || dir "cd ${S}-with-extensions failed"
	pushd core
	emake PREFIX="${D}usr/$(get_libdir)/${PN}" install || die "install failed"
	cd ../extensions || die "cd ../extensions failed"
	emake PREFIX="${D}usr/$(get_libdir)/${PN}" install || die "install failed"

	insinto "${D}usr/$(get_libdir)/${PN}"
	dobin extensions/mxscarna_src/probconsRNA # install in addition this binary
	popd
	dodoc readme
}