Build log

meep-1.0.3:20090719-162932.log (text/plain), 9.85 KB, created by Diego Elio Pettenò (RETIRED) on 2009-07-20 11:07:40 UTC

>>> Unpacking source...
>>> Unpacking meep-1.0.3.tar.gz to /var/tmp/portage/sci-physics/meep-1.0.3/work
>>> Source unpacked in /var/tmp/portage/sci-physics/meep-1.0.3/work
>>> Preparing source in /var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3 ...
 * econf: updating meep-1.0.3/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating meep-1.0.3/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-shared --without-mpi --without-hdf5 --without-libctl
configure: loading site script /usr/share/config.site
configure: loading site script /usr/share/crossdev/include/site/linux
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for C++ compiler vendor... gnu
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for i686-pc-linux-gnu-objdump... i686-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar
checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether i686-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of i686-pc-linux-gnu-g++... (cached) gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking for objdir... .libs
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for latex2html... latex2html
checking for sin in -lm... yes
checking for fftw_plan_dft_1d in -lfftw3... yes
checking for pkg-config... /usr/bin/pkg-config
checking for harminv >= 1.1... yes
checking HARMINV_CFLAGS...  
checking HARMINV_LIBS... -L/usr/lib/gcc/i686-pc-linux-gnu/4.4.0 -L/usr/lib/gcc/i686-pc-linux-gnu/4.4.0/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.4.0/../../.. -lharminv -llapack -lblas -lgfortranbegin -lgfortran -lm  
checking mpb.h usability... no
checking mpb.h presence... no
checking for mpb.h... no
checking for cblas_cgemm... no
checking for cblas_cgemm in -lgslcblas... yes
checking for gsl_sf_bessel_Jn in -lgsl... yes
checking for feenableexcept... yes
checking whether feenableexcept declaration is usable... yes
checking whether to catch and ignore SIGFPE signals... no
checking whether time.h and sys/time.h may both be included... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for cblas_ddot... yes
checking for cblas_daxpy... yes
checking for C/C++ restrict keyword... __restrict
configure: creating ./config.status
config.status: creating Makefile
config.status: creating meep-pkgconfig
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating tests/Makefile
config.status: creating examples/Makefile
config.status: creating libctl/Makefile
config.status: creating libctl/meep.scm
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3 ...
make -j14 
make  all-recursive
make[1]: Entering directory `/var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3'
Making all in src
make[2]: Entering directory `/var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3/src'
make  all-am
make[3]: Entering directory `/var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3/src'
  CXX    anisotropic_averaging.lo
  CXX    bands.lo
  CXX    boundaries.lo
  CXX    control_c.lo
  CXX    cw_fields.lo
  CXX    dft.lo
  CXX    fields.lo
  CXX    loop_in_chunks.lo
  CXX    bicgstab.lo
  CXX    h5fields.lo
  CXX    h5file.lo
  CXX    grace.lo
  CXX    energy_and_flux.lo
  CXX    initialize.lo
h5file.cpp: In member function 'void meep::h5file::remove()':
h5file.cpp:207: error: 'remove' is not a member of 'std'
make[3]: *** [h5file.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
grace.cpp: In destructor 'meep::grace::~grace()':
grace.cpp:71: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result
grace.cpp: In destructor 'meep::grace::~grace()':
grace.cpp:71: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result
grace.cpp: In destructor 'meep::grace::~grace()':
grace.cpp:71: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result
make[3]: Leaving directory `/var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3/src'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-physics/meep-1.0.3/work/meep-1.0.3'
make: *** [all] Error 2
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-physics/meep-1.0.3 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line  304:  Called _eapi2_src_compile
 [31;01m*[0m               ebuild.sh, line  634:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   		emake || die "emake failed"
 [31;01m*[0m  The die message:
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-physics/meep-1.0.3:20090719-162932.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-physics/meep-1.0.3/temp/environment'.
 [31;01m*[0m