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Gentoo's Bugzilla – Attachment 197405 Details for
Bug 277251
sci-chemistry/avogadro fails to build
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Build log
avogadro-0.9.6:20090709-195007.log (text/plain), 76.31 KB, created by
Diego Elio Pettenò (RETIRED)
on 2009-07-09 20:39:58 UTC
(
hide
)
Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2009-07-09 20:39:58 UTC
Size:
76.31 KB
patch
obsolete
>>>> Unpacking source... >>>> Unpacking avogadro-0.9.6.tar.bz2 to /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build" >loading initial cache file /var/tmp/portage/sci-chemistry/avogadro-0.9.6/temp/gentoo_common_config.cmake >-- The C compiler identification is GNU >-- The CXX compiler identification is GNU >-- Check for working C compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-gcc >-- Check for working C compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-gcc -- works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Check for working CXX compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-g++ >-- Check for working CXX compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-g++ -- works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- The build type is Gentoo >-- Performing Test HAVE_GCC_VISIBILITY >-- Performing Test HAVE_GCC_VISIBILITY - Success >-- Performing Test COMPILES_WITHOUT_FPERMISSIVE >-- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed >-- Looking for Q_WS_X11 >-- Looking for Q_WS_X11 - found >-- Looking for Q_WS_WIN >-- Looking for Q_WS_WIN - not found. >-- Looking for Q_WS_QWS >-- Looking for Q_WS_QWS - not found. >-- Looking for Q_WS_MAC >-- Looking for Q_WS_MAC - not found. >-- Found Qt-Version 4.5.2 >-- Found OpenSSL: /usr/lib/libssl.so >-- Looking for _POSIX_TIMERS >-- Looking for _POSIX_TIMERS - found >-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so >-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found >-- Looking for gethostbyname >-- Looking for gethostbyname - found >-- Looking for connect >-- Looking for connect - found >-- Looking for remove >-- Looking for remove - found >-- Looking for shmat >-- Looking for shmat - found >-- Looking for IceConnectionNumber in ICE >-- Looking for IceConnectionNumber in ICE - found >-- Found X11: /usr/lib/libX11.so >-- Found lupdate: /usr/bin/lupdate >-- Found lrelease: /usr/bin/lrelease >-- Found Eigen2: /usr/include/eigen2 >-- checking for module 'openbabel-2.0>=2.2.0' >-- found openbabel-2.0, version 2.2.1 >-- Found OpenBabel 2.2 or later: openbabel >-- Found OpenBabel2 executable: /usr/bin/babel >-- Found Git revision is: >-- Building released version. >-- Searching for python dependencies... >-- [1/5] Boost Python >-- Boost version: 1.37.0 >-- Found the following Boost libraries: >-- python >-- Boost Python found... >-- [2/5] Python Libraries >-- Found PythonLibs: /usr/lib/libpython2.6.so >-- [3/5] Python Interpreter >-- Found PythonInterp: /usr/bin/python >-- [4/5] Numpy Module >-- Numpy headers found >-- [5/5] SIP Module >-- Found sip.h header... >-- All python dependencies found - Python support enabled >-- GLEW found and GLSL support enabled >-- Threaded OpenGL rendering not enabled >-- Setting new boost python libraries >-- Enabled python terminal >-- Python site-packages directory: /usr/lib/python2.6/site-packages >-- docbook tools not found, doc targets disabled >-- <<< Gentoo configuration >>> >Build type: Gentoo >Install path: /usr > >-- Configuring done >-- Generating done >-- Build files have been written to: /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build" >make -j14 >[ 0%] [ 0%] [ 0%] [ 0%] [ 1%] [ 1%] [ 1%] Generating qrc_pythontool.cxx >Generating glgraphicsview.moc >Generating cube.moc >Generating pluginmanager.moc >[ 1%] [ 1%] Generating pythontool_p.moc >Generating toolgroup.moc >Generating engine.moc >[ 1%] [ 2%] [ 2%] [ 2%] Generating color.moc >[ 2%] Generating tool.moc >Generating molecule.moc >Generating periodictablescene_p.moc >[ 2%] Generating plugin.moc >Generating bond.moc >Generating periodictableview.moc >Generating zmatrix.moc >[ 2%] [ 3%] [ 3%] [ 3%] [ 3%] Generating fragment.moc >Generating pythonextension_p.moc >Generating extension.moc >[ 3%] [ 3%] Generating mesh.moc >Generating pythonengine_p.moc >[ 4%] Generating plotwidget.moc >Generating primitive.moc >Generating openbabelwrapper.moc >[ 4%] Generating pythonerror.moc >[ 4%] Generating atom.moc >[ 4%] Generating glwidget.moc >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/openbabelwrapper.h:0: Warning: No relevant classes found. No output generated. >[ 4%] [ 4%] [ 5%] [ 5%] [ 5%] Generating residue.moc >Generating animation.moc >Generating protein.moc >Generating moleculefile.moc >Generating elementdetail_p.moc >[ 5%] [ 5%] [ 5%] Generating elementtranslator.moc >[ 5%] [ 6%] Generating colorbutton.moc >Generating bsdyengine.moc >Generating elementcolor.moc >Generating ui_bsdysettingswidget.h >[ 6%] [ 6%] [ 6%] [ 6%] Generating libavogadro_fr.qm >Generating libavogadro_en_GB.qm >[ 7%] Generating libavogadro_ja.qm >[ 7%] [ 7%] Generating libavogadro_zh_CN.qm >[ 7%] Generating libavogadro_es.qm >[ 7%] Generating libavogadro_tr.qm >[ 7%] Generating libavogadro_cs.qm >Generating libavogadro_ca.qm >Generating libavogadro_nb.qm >Generating libavogadro_pl.qm >[ 8%] Generating libavogadro_pt.qm >[ 8%] [ 8%] Generating libavogadro_de.qm >Generating libavogadro_en_CA.qm >[ 8%] [ 8%] [ 8%] [ 8%] [ 9%] Generating libavogadro_pt_BR.qm >Generating libavogadro_id.qm >Generating libavogadro_zh_TW.qm >Generating libavogadro_fi.qm >Generating libavogadro_ru.qm >[ 9%] [ 9%] [ 9%] Generating libavogadro_bg.qm >[ 9%] [ 10%] Generating libavogadro_nl.qm >Generating libavogadro_ar.qm >[ 10%] Generating libavogadro_sv.qm >[ 10%] [ 10%] Generating libavogadro_sk.qm >Generating libavogadro_ko.qm >Generating libavogadro_it.qm >Generating libavogadro_uk.qm >Scanning dependencies of target avogadro >[ 10%] [ 10%] [ 10%] [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o >[ 10%] [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glgraphicsview.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o >[ 11%] [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o >[ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o >[ 11%] [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o >[ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o >[ 12%] [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o >[ 12%] [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o >[ 12%] [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o >[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o >[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o >[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o >[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o >[ 13%] [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o >[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o >[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o >[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o >[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o >[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o >[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o >[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o >[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o >[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o >[ 15%] [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/openbabelwrapper.cpp.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o >[ 16%] [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o >[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o >[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/filetreeitem.cpp.o >[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o >[ 17%] [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:31: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:27: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:31: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:27: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >[ 17%] [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o >Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:32, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:32, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o >[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o >[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o >[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o >[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o >[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o >[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o >[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:26: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/pythonerror.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:25: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:26: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/pythonerror.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:25: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonthread_p.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:37: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:31: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonthread_p.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:37: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:31: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >Linking CXX shared library ../../lib/libavogadro.so >[ 19%] Built target avogadro >[ 19%] [ 19%] [ 20%] [ 20%] [ 20%] [ 20%] [ 20%] Generating moc_axesengine.cxx >Generating ui_cartoonsettingswidget.h >Generating ui_dipolesettingswidget.h >Generating ui_hbondsettingswidget.h >Generating ui_orbitalsettingswidget.h >Generating moc_forceengine.cxx >Generating ui_labelsettingswidget.h >[ 21%] [ 21%] [ 21%] [ 22%] Generating moc_cartoonengine.cxx >[ 22%] Generating moc_hbondengine.cxx >Generating moc_orbitalengine.cxx >Generating moc_dipoleengine.cxx >[ 22%] Generating moc_labelengine.cxx >[ 22%] Generating moc_cartoonmeshgenerator.cxx >[ 22%] Generating ui_overlaysettingswidget.h >[ 22%] [ 22%] /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/engines/cartoonmeshgenerator.h:0: Warning: No relevant classes found. No output generated. >Generating moc_simplewireengine.cxx >[ 22%] [ 22%] Generating ui_ringsettingswidget.h >[ 23%] [ 23%] Generating ui_ribbonsettingswidget.h >Generating moc_ringengine.cxx >Scanning dependencies of target axesengine >Generating ui_spheresettingswidget.h >Scanning dependencies of target forceengine >Generating moc_overlayengine.cxx >Scanning dependencies of target cartoonengine >Generating moc_polygonengine.cxx >Scanning dependencies of target simplewireengine >Scanning dependencies of target hbondengine >[ 24%] Scanning dependencies of target labelengine >[ 24%] Generating ui_sticksettingswidget.h >[ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o >[ 24%] Generating moc_sphereengine.cxx >[ 24%] Generating moc_ribbonengine.cxx >[ 24%] Generating moc_stickengine.cxx >Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o >Scanning dependencies of target polygonengine >Scanning dependencies of target ringengine >Scanning dependencies of target dipoleengine >[ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o >Scanning dependencies of target overlayengine >[ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o >Scanning dependencies of target orbitalengine >[ 24%] Scanning dependencies of target ribbonengine >Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o >Scanning dependencies of target sphereengine >[ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o >Scanning dependencies of target stickengine >[ 24%] [ 24%] [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o >[ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o >Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o >Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/overlayengine.cpp.o >[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/orbitalengine.dir/orbitalengine.cpp.o >[ 26%] [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o >[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o >Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o >[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o >[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o >[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o >[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o >Linking CXX shared module ../../../lib/simplewireengine.so >Linking CXX shared module ../../../lib/forceengine.so >[ 27%] [ 28%] Linking CXX shared module ../../../lib/axesengine.so >[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o >Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o >Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o >[ 28%] Built target simplewireengine >[ 29%] Linking CXX shared module ../../../lib/polygonengine.so >Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o >[ 29%] [ 29%] [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o >Generating ui_surfacesettingswidget.h >Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o >[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/orbitalengine.dir/moc_orbitalengine.cxx.o >[ 29%] [ 29%] [ 29%] Generating moc_surfaceengine.cxx >Built target axesengine >Built target forceengine >[ 29%] [ 29%] [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o >Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o >Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o >[ 29%] Scanning dependencies of target surfaceengine >Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o >[ 29%] [ 29%] Built target polygonengine >Generating ui_wiresettingswidget.h >[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o >[ 29%] [ 29%] Generating qrc_aligntool.cxx >Generating moc_wireengine.cxx >[ 30%] Generating moc_aligntool.cxx >Scanning dependencies of target aligntool >Scanning dependencies of target wireengine >Linking CXX shared module ../../../lib/dipoleengine.so >[ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o >Linking CXX shared module ../../../lib/overlayengine.so >[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o >Linking CXX shared module ../../../lib/sphereengine.so >Linking CXX shared module ../../../lib/stickengine.so >Linking CXX shared module ../../../lib/ribbonengine.so >[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o >[ 31%] Built target overlayengine >Linking CXX shared module ../../../lib/orbitalengine.so >[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o >[ 31%] Linking CXX shared module ../../../lib/ringengine.so >Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o >Linking CXX shared module ../../../lib/hbondengine.so >Linking CXX shared module ../../../lib/labelengine.so >[ 31%] Built target dipoleengine >[ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o >[ 31%] Built target stickengine >[ 32%] [ 32%] Generating qrc_autoopttool.cxx >Built target sphereengine >[ 32%] [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o >Built target orbitalengine >[ 32%] Generating moc_autoopttool.cxx >[ 32%] [ 32%] Built target ribbonengine >Generating qrc_autorotatetool.cxx >[ 32%] [ 32%] Generating moc_autorotatetool.cxx >Generating qrc_bondcentrictool.cxx >[ 33%] [ 33%] [ 33%] Generating moc_bondcentrictool.cxx >[ 33%] Generating moc_clickmeasuretool.cxx >Generating qrc_clickmeasuretool.cxx >Linking CXX shared module ../../../lib/cartoonengine.so >[ 33%] Built target ringengine >[ 34%] Generating moc_skeletontree.cxx >Built target hbondengine >[ 34%] Scanning dependencies of target autoopttool >[ 35%] Generating qrc_drawtool.cxx >Scanning dependencies of target clickmeasuretool >Generating moc_drawtool.cxx >[ 35%] Scanning dependencies of target autorotatetool >Generating moc_drawcommand.cxx >Scanning dependencies of target bondcentrictool >[ 35%] Generating qrc_manipulatetool.cxx >[ 35%] /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/tools/drawcommand.h:0: Warning: No relevant classes found. No output generated. >Generating qrc_navigatetool.cxx >Scanning dependencies of target drawtool >[ 35%] [ 36%] Generating moc_navigatetool.cxx >Generating qrc_selectrotatetool.cxx >[ 36%] Linking CXX shared module ../../../lib/surfaceengine.so >[ 36%] Generating moc_selectrotatetool.cxx >[ 36%] [ 36%] Generating moc_manipulatetool.cxx >Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o >[ 36%] [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o >Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o >Generating moc_eyecandy.cxx >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/tools/eyecandy.h:0: Warning: No relevant classes found. No output generated. >[ 36%] Built target labelengine >[ 37%] Generating ui_navigatesettingswidget.h >[ 37%] Generating qrc_animation.cxx >[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o >[ 37%] [ 37%] Generating moc_animationextension.cxx >[ 37%] Generating moc_eyecandy.cxx >Scanning dependencies of target navigatetool >Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/tools/eyecandy.h:0: Warning: No relevant classes found. No output generated. >[ 38%] [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o >Generating moc_animationdialog.cxx >Scanning dependencies of target selectrotatetool >Scanning dependencies of target manipulatetool >[ 38%] [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o >Generating moc_povpainter.cxx >[ 39%] [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o >Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/povpainter.h:0: Warning: No relevant classes found. No output generated. >[ 39%] Generating moc_trajvideomaker.cxx >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/trajvideomaker.h:0: Warning: No relevant classes found. No output generated. >[ 39%] [ 39%] Generating ui_animationdialog.h >[ 39%] Built target cartoonengine >Built target surfaceengine >[ 39%] [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o >Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o >Scanning dependencies of target animationextension >Linking CXX shared module ../../../lib/wireengine.so >Linking CXX shared module ../../../lib/aligntool.so >[ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o >[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o >[ 39%] Generating ui_fileimportdialog.h >[ 40%] Generating moc_fileimportextension.cxx >Scanning dependencies of target fileimportextension >[ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o >[ 40%] [ 40%] Built target wireengine >Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o >[ 40%] [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o >Built target aligntool >[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o >[ 41%] Linking CXX shared module ../../../lib/clickmeasuretool.so >Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o >Linking CXX shared module ../../../lib/autorotatetool.so >[ 41%] Generating ui_conformersearchdialog.h >[ 42%] Generating moc_forcefieldextension.cxx >[ 42%] [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o >Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o >[ 42%] Generating moc_forcefielddialog.cxx >[ 42%] Generating moc_constraintsdialog.cxx >[ 42%] Generating moc_constraintsmodel.cxx >[ 42%] [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o >Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o >[ 42%] [ 42%] Built target clickmeasuretool >[ 42%] [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o >Built target autorotatetool >[ 43%] [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o >Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o >[ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o >Generating moc_conformersearchdialog.cxx >[ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o >[ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o >[ 43%] Generating ui_forcefielddialog.h >[ 43%] [ 44%] Generating ui_constraintsdialog.h >Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o >[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o >[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o >[ 44%] [ 44%] Scanning dependencies of target forcefieldextension >Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o >Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o >[ 45%] Generating ui_gamessefpmatchdialog.h >[ 45%] [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o >Linking CXX shared module ../../../lib/drawtool.so >Generating moc_gamessextension.cxx >Linking CXX shared module ../../../lib/selectrotatetool.so >[ 46%] [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o >[ 47%] Generating ui_mopacinputdialog.h >[ 47%] Generating moc_gaussianextension.cxx >Generating moc_gamessinputdialog.cxx >[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o >[ 47%] [ 47%] [ 47%] Generating moc_h2methylextension.cxx >Generating moc_qcheminputdialog.cxx >Generating moc_gaussianinputdialog.cxx >[ 47%] Linking CXX shared module ../../../lib/bondcentrictool.so >[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o >Linking CXX shared module ../../../lib/fileimportextension.so >[ 47%] Generating moc_gamessinputdata.cxx >Scanning dependencies of target h2methylextension >[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o >[ 47%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/gamessinputdata.h:0: Warning: No relevant classes found. No output generated. >[ 47%] Generating moc_molproinputdialog.cxx >Generating moc_gamesshighlighter.cxx >Linking CXX shared module ../../../lib/navigatetool.so >[ 47%] [ 47%] Generating moc_gamessefpmatchdialog.cxx >Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o >[ 48%] Linking CXX shared module ../../../lib/manipulatetool.so >Generating moc_nwcheminputdialog.cxx >Linking CXX shared module ../../../lib/autoopttool.so >[ 48%] Generating ui_gamessinputdialog.h >[ 48%] Generating moc_mopacinputdialog.cxx >Scanning dependencies of target gamessextension >[ 48%] Built target fileimportextension >[ 48%] Built target drawtool >[ 48%] [ 48%] Generating ui_gaussianinputdialog.h >[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o >Built target selectrotatetool >[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o >[ 48%] Generating ui_qcheminputdialog.h >[ 48%] Generating ui_molproinputdialog.h >[ 48%] Generating ui_nwcheminputdialog.h >[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o >Scanning dependencies of target gaussianextension >[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessextension.cpp.o >[ 48%] Built target bondcentrictool >[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o >[ 48%] [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o >[ 48%] Built target autoopttool >[ 49%] Built target navigatetool >Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o >[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o >[ 49%] Built target manipulatetool >[ 49%] [ 49%] [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/gaussianextension.cpp.o >Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o >Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o >[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o >[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o >Linking CXX shared module ../../../lib/h2methylextension.so >[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o >[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o >[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_povpainter.cxx.o >[ 51%] [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/gaussianinputdialog.cpp.o >[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/qcheminputdialog.cpp.o >[ 51%] [ 51%] Built target h2methylextension >[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animation.cxx.o >[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o >[ 52%] Generating moc_hydrogensextension.cxx >Linking CXX shared module ../../../lib/animationextension.so >Scanning dependencies of target hydrogenextension >[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o >[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o >[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o >[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o >[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/molproinputdialog.cpp.o >[ 52%] Generating ui_insertfragmentdialog.h >[ 52%] Generating moc_insertfragmentextension.cxx >[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/nwcheminputdialog.cpp.o >[ 53%] [ 53%] Generating moc_directorytreemodel.cxx >Built target animationextension >[ 53%] Generating moc_insertfragmentdialog.cxx >[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o >[ 54%] Generating moc_insertcommand.cxx >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/insertcommand.h:0: Warning: No relevant classes found. No output generated. >Scanning dependencies of target insertfragmentextension >[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/mopacinputdialog.cpp.o >[ 54%] [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o >[ 54%] Generating ui_insertpeptidedialog.h >Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_gaussianextension.cxx.o >[ 55%] Generating moc_insertpeptideextension.cxx >[ 55%] [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o >Linking CXX shared module ../../../lib/hydrogenextension.so >Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/directorytreemodel.cpp.o >Scanning dependencies of target insertpeptideextension >[ 56%] Generating ui_molecularpropdialog.h >[ 56%] [ 56%] Generating moc_molecularpropextension.cxx >Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o >[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o >[ 56%] Generating moc_networkfetchextension.cxx >Scanning dependencies of target molecularpropextension >Scanning dependencies of target networkfetchextension >[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o >[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o >[ 56%] [ 56%] Built target hydrogenextension >[ 56%] [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o >Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o >[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o >[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o >[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o >[ 56%] Generating ui_orbitaldialog.h >[ 56%] Generating moc_orbitalextension.cxx >[ 56%] Generating ui_povraydialog.h >[ 56%] Generating moc_orbitaldialog.cxx >[ 56%] Generating moc_povrayextension.cxx >[ 57%] Generating moc_basisset.cxx >[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_gaussianinputdialog.cxx.o >[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o >[ 57%] Generating moc_gaussianfchk.cxx >[ 57%] /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/gaussianfchk.h:0: Warning: No relevant classes found. No output generated. >[ 57%] Generating moc_povraydialog.cxx >Generating moc_slaterset.cxx >Scanning dependencies of target povrayextension >[ 57%] Generating moc_mopacaux.cxx >[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o >[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/mopacaux.h:0: Warning: No relevant classes found. No output generated. >[ 57%] Generating moc_molpro.cxx >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/molpro.h:0: Warning: No relevant classes found. No output generated. >[ 57%] [ 57%] Linking CXX shared module ../../../lib/forcefieldextension.so >Generating moc_vdwsurface.cxx >[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_directorytreemodel.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o >[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o >[ 59%] Generating __/__/qtiocompressor/moc_qtiocompressor.cxx >[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o >Scanning dependencies of target orbitalextension >[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_qcheminputdialog.cxx.o >Linking CXX shared module ../../../lib/networkfetchextension.so >Linking CXX shared module ../../../lib/molecularpropextension.so >[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o >[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_molproinputdialog.cxx.o >Linking CXX shared module ../../../lib/insertpeptideextension.so >[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o >[ 59%] Built target forcefieldextension >[ 60%] [ 60%] [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/orbitaldialog.cpp.o >Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o >[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o >[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o >[ 60%] Built target insertpeptideextension >[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/basisset.cpp.o >[ 61%] [ 61%] [ 61%] Built target networkfetchextension >Built target molecularpropextension >[ 61%] Generating moc_propextension.cxx >[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_nwcheminputdialog.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/gaussianfchk.cpp.o >[ 63%] Generating __/tools/moc_skeletontree.cxx >[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/slaterset.cpp.o >[ 63%] Generating moc_propmodel.cxx >[ 63%] Generating ui_pythonterminalwidget.h >[ 63%] [ 63%] Generating moc_pythonterminal.cxx >Generating moc_highlighter.cxx >[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/mopacaux.cpp.o >Scanning dependencies of target propextension >Linking CXX shared module ../../../lib/insertfragmentextension.so >Scanning dependencies of target pythonterminal >[ 64%] Linking CXX shared module ../../../lib/gamessextension.so >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o >Generating moc_selectextension.cxx >[ 65%] Generating ui_shaderdialog.h >Scanning dependencies of target selectextension >[ 65%] Generating moc_shaderextension.cxx >Linking CXX shared module ../../../lib/povrayextension.so >Scanning dependencies of target shaderextension >[ 65%] [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o >Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o >[ 65%] [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o >Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_mopacinputdialog.cxx.o >[ 65%] [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o >Built target insertfragmentextension >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o >[ 65%] Built target gamessextension >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o >[ 65%] Built target povrayextension >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o >Linking CXX shared module ../../../lib/gaussianextension.so >[ 65%] Generating ui_spectratabnmr.h >[ 65%] Generating moc_spectraextension.cxx >[ 65%] Generating moc_spectradialog.cxx >[ 65%] Generating moc_spectratype.cxx >[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/molpro.cpp.o >[ 66%] [ 66%] Generating moc_spectratype_ir.cxx >Generating ui_supercelldialog.h >[ 66%] Generating moc_supercellextension.cxx >[ 66%] [ 66%] [ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o >Generating moc_spectratype_nmr.cxx >Generating moc_supercelldialog.cxx >[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o >Scanning dependencies of target supercellextension >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/shaderextension.cpp: In member function 'void Avogadro::ShaderExtension::loadShaders()': >/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/shaderextension.cpp:387: error: 'INSTALL_PREFIX' was not declared in this scope >make[2]: *** [libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o] Error 1 >[ 66%] [ 67%] Generating ui_spectradialog.h >Generating ui_unitcellparamdialog.h >make[1]: *** [libavogadro/src/extensions/CMakeFiles/shaderextension.dir/all] Error 2 >make[1]: *** Waiting for unfinished jobs.... >[ 67%] Generating ui_spectratabir.h >[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o >[ 67%] Generating moc_unitcellextension.cxx >Scanning dependencies of target spectraextension >[ 67%] Linking CXX shared module ../../../lib/selectextension.so >Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o >[ 67%] Generating moc_unitcellparamdialog.cxx >[ 67%] Built target gaussianextension >[ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o >[ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o >Scanning dependencies of target unitcellextension >[ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectraextension.cpp.o >[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o >[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o >[ 70%] [ 70%] Built target selectextension >[ 70%] [ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o >[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o >[ 71%] Linking CXX shared module ../../../lib/propextension.so >Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o >[ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_orbitaldialog.cxx.o >[ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectradialog.cpp.o >[ 72%] In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype.cpp.o >[ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_basisset.cxx.o >[ 72%] [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o >[ 72%] Built target propextension >[ 72%] [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_gaussianfchk.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o >[ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o >[ 72%] [ 72%] [ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_mopacaux.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_slaterset.cxx.o >[ 74%] [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o >[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o >Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_molpro.cxx.o >[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o >[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o >Linking CXX shared module ../../../lib/supercellextension.so >[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o >[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/__/__/qtiocompressor/moc_qtiocompressor.cxx.o >Linking CXX shared module ../../../lib/unitcellextension.so >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: >/usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: >/usr/include/features.h:158:1: warning: this is the location of the previous definition >In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, > from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, > from /usr/include/boost-1_37/boost/python/args.hpp:8, > from /usr/include/boost-1_37/boost/python.hpp:11, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: >/usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined >In file included from /usr/include/string.h:26, > from /usr/include/qt4/QtCore/qbytearray.h:48, > from /usr/include/qt4/QtCore/qstring.h:46, > from /usr/include/qt4/QtCore/qobject.h:48, > from /usr/include/qt4/QtCore/qtranslator.h:45, > from /usr/include/qt4/QtCore/QTranslator:1, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, > from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: >/usr/include/features.h:160:1: warning: this is the location of the previous definition >Linking CXX shared module ../../../lib/pythonterminal.so >Linking CXX shared module ../../../lib/orbitalextension.so >[ 74%] Built target supercellextension >[ 74%] Built target unitcellextension >[ 74%] Built target pythonterminal >[ 74%] Built target orbitalextension >Linking CXX shared module ../../../lib/spectraextension.so >[ 74%] Built target spectraextension >make: *** [all] Error 2 > [31;01m*[0m > [31;01m*[0m ERROR: sci-chemistry/avogadro-0.9.6 failed. > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 49: Called src_compile > [31;01m*[0m environment, line 3003: Called cmake-utils_src_compile > [31;01m*[0m environment, line 870: Called cmake-utils_src_make > [31;01m*[0m environment, line 949: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake "$@" || die "Make failed!"; > [31;01m*[0m The die message: > [31;01m*[0m Make failed! > [31;01m*[0m > [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant. > [31;01m*[0m A complete build log is located at '/var/log/portage/sci-chemistry/avogadro-0.9.6:20090709-195007.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/avogadro-0.9.6/temp/environment'. > [31;01m*[0m
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bug 277251
: 197405