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Gentoo's Bugzilla – Attachment 197402 Details for
Bug 277246
sci-biology/prank: fails to build with gcc-4.4
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Build log
prank-081202:20090709-193043.log (text/plain), 4.27 KB, created by
Diego Elio Pettenò (RETIRED)
on 2009-07-09 20:35:38 UTC
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Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2009-07-09 20:35:38 UTC
Size:
4.27 KB
patch
obsolete
>>>> Unpacking source... >>>> Unpacking prank.src.081202.tgz to /var/tmp/portage/sci-biology/prank-081202/work >>>> Source unpacked in /var/tmp/portage/sci-biology/prank-081202/work >>>> Preparing source in /var/tmp/portage/sci-biology/prank-081202/work/src ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/prank-081202/work/src ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/prank-081202/work/src ... >make -j14 >g++ -c -O2 -pipe -I/usr/include -I. -o ancestralnode.o ancestralnode.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o ancestralsequence.o ancestralsequence.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o boolmatrix.o boolmatrix.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o chaosanchors.o chaosanchors.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o characterprobability.o characterprobability.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o dbmatrix.o dbmatrix.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o eigen.o eigen.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o flmatrix.o flmatrix.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o fullprobability.o fullprobability.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o guidetree.o guidetree.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o hirschberg.o hirschberg.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o hmmodel.o hmmodel.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o intmatrix.o intmatrix.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o node.o node.cpp >g++ -c -O2 -pipe -I/usr/include -I. -o phylomatchscore.o phylomatchscore.cpp >node.cpp: In constructor 'Node::Node(std::string)': >node.cpp:63: error: 'sprintf' was not declared in this scope >node.cpp: In constructor 'Node::Node(std::string, Node*, int)': >node.cpp:101: error: 'sprintf' was not declared in this scope >node.cpp: In member function 'void Node::findMiddlePoint()': >node.cpp:134: error: 'sprintf' was not declared in this scope >node.cpp: In member function 'void Node::findMiddle(int)': >node.cpp:159: error: 'sprintf' was not declared in this scope >node.cpp:177: error: 'sprintf' was not declared in this scope >node.cpp:199: error: 'sprintf' was not declared in this scope >node.cpp:218: error: 'sprintf' was not declared in this scope >make: *** [node.o] Error 1 >make: *** Waiting for unfinished jobs.... >guidetree.cpp: In constructor 'GuideTree::GuideTree(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > >*, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > >*, IntMatrix*)': >guidetree.cpp:93: error: 'sprintf' was not declared in this scope >guidetree.cpp: In member function 'void GuideTree::makeTree(FlMatrix*, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > >*)': >guidetree.cpp:318: error: 'sprintf' was not declared in this scope >guidetree.cpp:322: error: 'sprintf' was not declared in this scope >guidetree.cpp: In member function 'void GuideTree::joinNeighbors(FlMatrix*, std::string*, FlMatrix*, std::string*, FlMatrix*, int*)': >guidetree.cpp:408: error: 'sprintf' was not declared in this scope >make: *** [guidetree.o] Error 1 >chaosanchors.cpp: In member function 'IntMatrix* ChaosAnchors::getAnchors(int*)': >chaosanchors.cpp:94: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result > [31;01m*[0m > [31;01m*[0m ERROR: sci-biology/prank-081202 failed. > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 49: Called src_compile > [31;01m*[0m environment, line 292: Called _eapi2_src_compile > [31;01m*[0m ebuild.sh, line 634: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake || die "emake failed" > [31;01m*[0m The die message: > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant. > [31;01m*[0m A complete build log is located at '/var/log/portage/sci-biology/prank-081202:20090709-193043.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/prank-081202/temp/environment'. > [31;01m*[0m
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bug 277246
: 197402