>>> Unpacking source... >>> Unpacking eugene-3.5d-1.tar.gz to /var/tmp/portage/sci-biology/eugene-3.5d/work * Running eautoreconf in '/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' ... * Running aclocal ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy ...  [ ok ] >>> Source unpacked in /var/tmp/portage/sci-biology/eugene-3.5d/work >>> Preparing source in /var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1 ... ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib configure: loading site script /usr/share/config.site configure: loading site script /usr/share/crossdev/include/site/linux checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/config/missing: Unknown `--run' option Try `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/config/missing --help' for more information configure: WARNING: `missing' script is too old or missing checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of i686-pc-linux-gnu-gcc... gcc3 checking for gawk... (cached) gawk checking whether ln -s works... yes checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib checking for main in -lc... yes checking for main in -ldl... yes checking for main in -lgcc... yes checking for main in -lgd... yes checking for main in -lm... yes checking for main in -lpng... yes checking for main in -lz... yes checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking values.h usability... yes checking values.h presence... yes checking for values.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking whether lstat dereferences a symlink specified with a trailing slash... yes checking whether stat accepts an empty string... no checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking for strspn... yes checking for uname... yes checking for getopt... yes configure: creating ./config.status config.status: creating Makefile config.status: creating README config.status: creating src/Makefile config.status: creating src/GDIF/Makefile config.status: creating src/Parametrization/Makefile config.status: creating src/SensorPlugins/Makefile config.status: creating src/SensorPlugins/0_SensorTk/Makefile config.status: creating src/SensorPlugins/0_SensorTk/GetData/Makefile config.status: creating src/SensorPlugins/AnnotaStruct/Makefile config.status: creating src/SensorPlugins/BlastX/Makefile config.status: creating src/SensorPlugins/Est/Makefile config.status: creating src/SensorPlugins/EuStop/Makefile config.status: creating src/SensorPlugins/FrameShift/Makefile config.status: creating src/SensorPlugins/GCPlot/Makefile config.status: creating src/SensorPlugins/GFF/Makefile config.status: creating src/SensorPlugins/GSplicer/Makefile config.status: creating src/SensorPlugins/Homology/Makefile config.status: creating src/SensorPlugins/IfElse/Makefile config.status: creating src/SensorPlugins/MarkovConst/Makefile config.status: creating src/SensorPlugins/MarkovIMM/Makefile config.status: creating src/SensorPlugins/MarkovIMM/GetData/Makefile config.status: creating src/SensorPlugins/MarkovProt/Makefile config.status: creating src/SensorPlugins/MarkovProt/GetData/Makefile config.status: creating src/SensorPlugins/NG2/Makefile config.status: creating src/SensorPlugins/NStart/Makefile config.status: creating src/SensorPlugins/PatConst/Makefile config.status: creating src/SensorPlugins/PepSignal/Makefile config.status: creating src/SensorPlugins/Plotter/Makefile config.status: creating src/SensorPlugins/Repeat/Makefile config.status: creating src/SensorPlugins/Riken/Makefile config.status: creating src/SensorPlugins/SMachine/Makefile config.status: creating src/SensorPlugins/SPred/Makefile config.status: creating src/SensorPlugins/SpliceWAM/Makefile config.status: creating src/SensorPlugins/StartWAM/Makefile config.status: creating src/SensorPlugins/Tester/Makefile config.status: creating src/SensorPlugins/Transcript/Makefile config.status: creating src/SensorPlugins/QualData/Makefile config.status: creating plugins/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1 ... make -j14 cd . && autoheader rm -f stamp-h1 touch config.h.in cd . && /bin/sh ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make all-recursive make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' Making all in src make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making all in Parametrization make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT ParaOptimization.o -MD -MP -MF .deps/ParaOptimization.Tpo -c -o ParaOptimization.o ParaOptimization.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT OptiAlgorithm.o -MD -MP -MF .deps/OptiAlgorithm.Tpo -c -o OptiAlgorithm.o OptiAlgorithm.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Random.o -MD -MP -MF .deps/Random.Tpo -c -o Random.o Random.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT LineSearch.o -MD -MP -MF .deps/LineSearch.Tpo -c -o LineSearch.o LineSearch.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Genetic.o -MD -MP -MF .deps/Genetic.Tpo -c -o Genetic.o Genetic.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT CrossingOver.o -MD -MP -MF .deps/CrossingOver.Tpo -c -o CrossingOver.o CrossingOver.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Mutating.o -MD -MP -MF .deps/Mutating.Tpo -c -o Mutating.o Mutating.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Scaling.o -MD -MP -MF .deps/Scaling.Tpo -c -o Scaling.o Scaling.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Selecting.o -MD -MP -MF .deps/Selecting.Tpo -c -o Selecting.o Selecting.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Sharing.o -MD -MP -MF .deps/Sharing.Tpo -c -o Sharing.o Sharing.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT SimulatedAnnealing.o -MD -MP -MF .deps/SimulatedAnnealing.Tpo -c -o SimulatedAnnealing.o SimulatedAnnealing.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Chromosome.o -MD -MP -MF .deps/Chromosome.Tpo -c -o Chromosome.o Chromosome.cc mv -f .deps/Random.Tpo .deps/Random.Po mv -f .deps/Mutating.Tpo .deps/Mutating.Po mv -f .deps/Sharing.Tpo .deps/Sharing.Po mv -f .deps/Scaling.Tpo .deps/Scaling.Po mv -f .deps/CrossingOver.Tpo .deps/CrossingOver.Po mv -f .deps/SimulatedAnnealing.Tpo .deps/SimulatedAnnealing.Po mv -f .deps/Selecting.Tpo .deps/Selecting.Po mv -f .deps/Chromosome.Tpo .deps/Chromosome.Po mv -f .deps/OptiAlgorithm.Tpo .deps/OptiAlgorithm.Po ParaOptimization.cc: In member function 'double ParaOptimization::ParaEvaluate(bool)': ParaOptimization.cc:183: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result ParaOptimization.cc:200: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result ParaOptimization.cc:202: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result ParaOptimization.cc:215: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result mv -f .deps/ParaOptimization.Tpo .deps/ParaOptimization.Po mv -f .deps/LineSearch.Tpo .deps/LineSearch.Po mv -f .deps/Genetic.Tpo .deps/Genetic.Po rm -f libParametrization.a ar cru libParametrization.a ParaOptimization.o OptiAlgorithm.o Random.o LineSearch.o Genetic.o CrossingOver.o Mutating.o Scaling.o Selecting.o Sharing.o SimulatedAnnealing.o Chromosome.o i686-pc-linux-gnu-ranlib libParametrization.a make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' Making all in GDIF make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -O2 -pipe -MT gdIF.o -MD -MP -MF .deps/gdIF.Tpo -c -o gdIF.o gdIF.c mv -f .deps/gdIF.Tpo .deps/gdIF.Po rm -f libGDIF.a ar cru libGDIF.a gdIF.o i686-pc-linux-gnu-ranlib libGDIF.a make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' Making all in . make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT EuGene.o -MD -MP -MF .deps/EuGene.Tpo -c -o EuGene.o EuGene.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT DAG.o -MD -MP -MF .deps/DAG.Tpo -c -o DAG.o DAG.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Hits.o -MD -MP -MF .deps/Hits.Tpo -c -o Hits.o Hits.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT DNASeq.o -MD -MP -MF .deps/DNASeq.Tpo -c -o DNASeq.o DNASeq.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT System.o -MD -MP -MF .deps/System.Tpo -c -o System.o System.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Prediction.o -MD -MP -MF .deps/Prediction.Tpo -c -o Prediction.o Prediction.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT BackP.o -MD -MP -MF .deps/BackP.Tpo -c -o BackP.o BackP.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Sensor.o -MD -MP -MF .deps/Sensor.Tpo -c -o Sensor.o Sensor.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Dll.o -MD -MP -MF .deps/Dll.Tpo -c -o Dll.o Dll.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT MSensor.o -MD -MP -MF .deps/MSensor.Tpo -c -o MSensor.o MSensor.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Param.o -MD -MP -MF .deps/Param.Tpo -c -o Param.o Param.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT PenaltyDist.o -MD -MP -MF .deps/PenaltyDist.Tpo -c -o PenaltyDist.o PenaltyDist.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT AltEst.o -MD -MP -MF .deps/AltEst.Tpo -c -o AltEst.o AltEst.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Gff3Line.o -MD -MP -MF .deps/Gff3Line.Tpo -c -o Gff3Line.o Gff3Line.cc mv -f .deps/System.Tpo .deps/System.Po i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Attributes.o -MD -MP -MF .deps/Attributes.Tpo -c -o Attributes.o Attributes.cc mv -f .deps/Dll.Tpo .deps/Dll.Po i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Gap.o -MD -MP -MF .deps/Gap.Tpo -c -o Gap.o Gap.cc PenaltyDist.cc: In member function 'void PenaltyDist::LoadPenaltyDist(char*)': PenaltyDist.cc:116: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/PenaltyDist.Tpo .deps/PenaltyDist.Po Hits.cc: In member function 'Hits* Hits::ReadFromFile(FILE*, int*, int, int, int)': Hits.cc:148: warning: format '%as' expects type 'char**', but argument 11 has type 'char*' Hits.cc:150: warning: format not a string literal and no format arguments mv -f .deps/Hits.Tpo .deps/Hits.Po DNASeq.cc: In constructor 'DNASeq::DNASeq(char*)': DNASeq.cc:135: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result DNASeq.cc: In constructor 'DNASeq::DNASeq(char*)': DNASeq.cc:135: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result DNASeq.cc: In constructor 'DNASeq::DNASeq(char*)': DNASeq.cc:135: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result mv -f .deps/DNASeq.Tpo .deps/DNASeq.Po mv -f .deps/Sensor.Tpo .deps/Sensor.Po mv -f .deps/Gff3Line.Tpo .deps/Gff3Line.Po i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT GeneFeature.o -MD -MP -MF .deps/GeneFeature.Tpo -c -o GeneFeature.o GeneFeature.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT GeneFeatureSet.o -MD -MP -MF .deps/GeneFeatureSet.Tpo -c -o GeneFeatureSet.o GeneFeatureSet.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Locus.o -MD -MP -MF .deps/Locus.Tpo -c -o Locus.o Locus.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT SoTerms.o -MD -MP -MF .deps/SoTerms.Tpo -c -o SoTerms.o SoTerms.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Target.o -MD -MP -MF .deps/Target.Tpo -c -o Target.o Target.cc mv -f .deps/BackP.Tpo .deps/BackP.Po mv -f .deps/EuGene.Tpo .deps/EuGene.Po mv -f .deps/Gap.Tpo .deps/Gap.Po i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Range.o -MD -MP -MF .deps/Range.Tpo -c -o Range.o Range.cc mv -f .deps/MSensor.Tpo .deps/MSensor.Po mv -f .deps/Target.Tpo .deps/Target.Po mv -f .deps/Locus.Tpo .deps/Locus.Po mv -f .deps/Range.Tpo .deps/Range.Po mv -f .deps/Param.Tpo .deps/Param.Po mv -f .deps/AltEst.Tpo .deps/AltEst.Po SoTerms.cc: In member function 'void SoTerms::loadFile(char*)': SoTerms.cc:53: warning: format '%s' expects type 'char*', but argument 3 has type 'char (*)[100]' SoTerms.cc:60: warning: format '%s' expects type 'char*', but argument 3 has type 'char (*)[100]' SoTerms.cc:59: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result mv -f .deps/SoTerms.Tpo .deps/SoTerms.Po mv -f .deps/GeneFeature.Tpo .deps/GeneFeature.Po mv -f .deps/Attributes.Tpo .deps/Attributes.Po mv -f .deps/GeneFeatureSet.Tpo .deps/GeneFeatureSet.Po mv -f .deps/Prediction.Tpo .deps/Prediction.Po mv -f .deps/DAG.Tpo .deps/DAG.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -Wl,-O1 -o eugene EuGene.o DAG.o Hits.o DNASeq.o System.o Prediction.o BackP.o Sensor.o Dll.o MSensor.o Param.o PenaltyDist.o AltEst.o Gff3Line.o Attributes.o Gap.o GeneFeature.o GeneFeatureSet.o Locus.o SoTerms.o Target.o Range.o Parametrization/libParametrization.a GDIF/libGDIF.a -ldl -lz -lpng -lm -lgd -lgcc -ldl -lc make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making all in SensorPlugins make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' Making all in 0_SensorTk make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' Making all in GetData make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../.. -O2 -pipe -MT WAMbuilder.o -MD -MP -MF .deps/WAMbuilder.Tpo -c -o WAMbuilder.o WAMbuilder.cc In file included from WAMbuilder.cc:32: ../markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': ../markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result In file included from WAMbuilder.cc:32: ../markov.cc: In member function 'void TabChaine::sauve2fichier(FILE*) [with CHAINE = ChaineADN, T = short unsigned int]': WAMbuilder.cc:145: instantiated from here ../markov.cc:516: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../markov.cc:517: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../markov.cc:518: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../markov.cc:523: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../markov.cc: In member function 'int TabChaine::fichier2seq(FILE*, char*&) [with CHAINE = ChaineADN, T = int]': ../markov.cc:504: instantiated from 'void TabChaine::fichier2compte(FILE*, int, int, int) [with CHAINE = ChaineADN, T = int]' WAMbuilder.cc:99: instantiated from here ../markov.cc:396: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result mv -f .deps/WAMbuilder.Tpo .deps/WAMbuilder.Po i686-pc-linux-gnu-g++ -O2 -pipe -Wl,-O1 -o egn_WAMbuilder WAMbuilder.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT BStrArray.o -MD -MP -MF .deps/BStrArray.Tpo -c -o BStrArray.o BStrArray.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT WAM.o -MD -MP -MF .deps/WAM.Tpo -c -o WAM.o WAM.cc i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT markov.o -MD -MP -MF .deps/markov.Tpo -c -o markov.o markov.cc mv -f .deps/BStrArray.Tpo .deps/BStrArray.Po markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/markov.Tpo .deps/markov.Po In file included from WAM.cc:25: markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/WAM.Tpo .deps/WAM.Po rm -f libSensorTk.a ar cru libSensorTk.a BStrArray.o WAM.o markov.o i686-pc-linux-gnu-ranlib libSensorTk.a make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' Making all in AnnotaStruct make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.AnnotaStruct.o -MD -MP -MF .deps/Sensor.AnnotaStruct.Tpo -c -o Sensor.AnnotaStruct.o Sensor.AnnotaStruct.cc mv -f .deps/Sensor.AnnotaStruct.Tpo .deps/Sensor.AnnotaStruct.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.AnnotaStruct.so Sensor.AnnotaStruct.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' Making all in BlastX make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.BlastX.o -MD -MP -MF .deps/Sensor.BlastX.Tpo -c -o Sensor.BlastX.o Sensor.BlastX.cc mv -f .deps/Sensor.BlastX.Tpo .deps/Sensor.BlastX.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.BlastX.so Sensor.BlastX.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' Making all in Est make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Est.o -MD -MP -MF .deps/Sensor.Est.Tpo -c -o Sensor.Est.o Sensor.Est.cc mv -f .deps/Sensor.Est.Tpo .deps/Sensor.Est.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Est.so Sensor.Est.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' Making all in EuStop make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.EuStop.o -MD -MP -MF .deps/Sensor.EuStop.Tpo -c -o Sensor.EuStop.o Sensor.EuStop.cc mv -f .deps/Sensor.EuStop.Tpo .deps/Sensor.EuStop.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.EuStop.so Sensor.EuStop.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' Making all in FrameShift make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.FrameShift.o -MD -MP -MF .deps/Sensor.FrameShift.Tpo -c -o Sensor.FrameShift.o Sensor.FrameShift.cc mv -f .deps/Sensor.FrameShift.Tpo .deps/Sensor.FrameShift.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.FrameShift.so Sensor.FrameShift.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' Making all in GCPlot make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.GCPlot.o -MD -MP -MF .deps/Sensor.GCPlot.Tpo -c -o Sensor.GCPlot.o Sensor.GCPlot.cc mv -f .deps/Sensor.GCPlot.Tpo .deps/Sensor.GCPlot.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.GCPlot.so Sensor.GCPlot.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' Making all in GFF make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.GFF.o -MD -MP -MF .deps/Sensor.GFF.Tpo -c -o Sensor.GFF.o Sensor.GFF.cc mv -f .deps/Sensor.GFF.Tpo .deps/Sensor.GFF.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.GFF.so Sensor.GFF.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' Making all in GSplicer make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.GSplicer.o -MD -MP -MF .deps/Sensor.GSplicer.Tpo -c -o Sensor.GSplicer.o Sensor.GSplicer.cc mv -f .deps/Sensor.GSplicer.Tpo .deps/Sensor.GSplicer.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.GSplicer.so Sensor.GSplicer.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' Making all in Homology make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Homology.o -MD -MP -MF .deps/Sensor.Homology.Tpo -c -o Sensor.Homology.o Sensor.Homology.cc In file included from Sensor.Homology.h:26, from Sensor.Homology.cc:30: ../0_SensorTk/markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': ../0_SensorTk/markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result Sensor.Homology.cc: In member function 'void SensorHomology::ReadHomology(char*, DNASeq*, int, ProtMat*)': Sensor.Homology.cc:210: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/Sensor.Homology.Tpo .deps/Sensor.Homology.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Homology.so Sensor.Homology.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' Making all in IfElse make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.IfElse.o -MD -MP -MF .deps/Sensor.IfElse.Tpo -c -o Sensor.IfElse.o Sensor.IfElse.cc mv -f .deps/Sensor.IfElse.Tpo .deps/Sensor.IfElse.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.IfElse.so Sensor.IfElse.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' Making all in MarkovConst make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.MarkovConst.o -MD -MP -MF .deps/Sensor.MarkovConst.Tpo -c -o Sensor.MarkovConst.o Sensor.MarkovConst.cc mv -f .deps/Sensor.MarkovConst.Tpo .deps/Sensor.MarkovConst.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.MarkovConst.so Sensor.MarkovConst.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' Making all in MarkovIMM make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' Making all in GetData make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../.. -O2 -pipe -MT TrainIMM.o -MD -MP -MF .deps/TrainIMM.Tpo -c -o TrainIMM.o TrainIMM.cc In file included from TrainIMM.cc:37: strarray.h: In member function 'void String_Array::BinWrite(FILE*)': strarray.h:383: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result strarray.h:384: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result strarray.h:385: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result strarray.h:389: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result mv -f .deps/TrainIMM.Tpo .deps/TrainIMM.Po i686-pc-linux-gnu-g++ -O2 -pipe -Wl,-O1 -o egn_TrainIMM TrainIMM.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.MarkovIMM.o -MD -MP -MF .deps/Sensor.MarkovIMM.Tpo -c -o Sensor.MarkovIMM.o Sensor.MarkovIMM.cc mv -f .deps/Sensor.MarkovIMM.Tpo .deps/Sensor.MarkovIMM.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.MarkovIMM.so Sensor.MarkovIMM.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' Making all in MarkovProt make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' Making all in GetData make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../.. -O2 -pipe -MT buildMarkovProt.o -MD -MP -MF .deps/buildMarkovProt.Tpo -c -o buildMarkovProt.o buildMarkovProt.cc In file included from buildMarkovProt.cc:32: ../../0_SensorTk/markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': ../../0_SensorTk/markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../../0_SensorTk/markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../../0_SensorTk/markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result In file included from buildMarkovProt.cc:36: ../../../DNASeq.cc: In constructor 'DNASeq::DNASeq(char*)': ../../../DNASeq.cc:135: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result ../../../DNASeq.cc: In constructor 'DNASeq::DNASeq(char*)': ../../../DNASeq.cc:135: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result ../../../DNASeq.cc: In constructor 'DNASeq::DNASeq(char*)': ../../../DNASeq.cc:135: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result buildMarkovProt.cc: At global scope: buildMarkovProt.cc:39: warning: deprecated conversion from string constant to 'char*' In file included from buildMarkovProt.cc:32: ../../0_SensorTk/markov.cc: In member function 'void TabChaine::sauve2fichier(FILE*) [with CHAINE = ChainePROT21, T = short unsigned int]': buildMarkovProt.cc:90: instantiated from here ../../0_SensorTk/markov.cc:516: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../../0_SensorTk/markov.cc:517: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../../0_SensorTk/markov.cc:518: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../../0_SensorTk/markov.cc:523: warning: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result ../../0_SensorTk/markov.cc: In member function 'int TabChaine::fichier2seq(FILE*, char*&) [with CHAINE = ChainePROT21, T = int]': ../../0_SensorTk/markov.cc:494: instantiated from 'void TabChaine::fichier2compte(FILE*, int) [with CHAINE = ChainePROT21, T = int]' buildMarkovProt.cc:64: instantiated from here ../../0_SensorTk/markov.cc:396: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result mv -f .deps/buildMarkovProt.Tpo .deps/buildMarkovProt.Po i686-pc-linux-gnu-g++ -O2 -pipe -Wl,-O1 -o egn_buildMarkovProt buildMarkovProt.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.MarkovProt.o -MD -MP -MF .deps/Sensor.MarkovProt.Tpo -c -o Sensor.MarkovProt.o Sensor.MarkovProt.cc In file included from Sensor.MarkovProt.h:27, from Sensor.MarkovProt.cc:21: ../0_SensorTk/markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': ../0_SensorTk/markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/Sensor.MarkovProt.Tpo .deps/Sensor.MarkovProt.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.MarkovProt.so Sensor.MarkovProt.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' Making all in NG2 make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.NG2.o -MD -MP -MF .deps/Sensor.NG2.Tpo -c -o Sensor.NG2.o Sensor.NG2.cc Sensor.NG2.cc: In member function 'void SensorNG2::ReadNG2F(char*, int)': Sensor.NG2.cc:122: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result Sensor.NG2.cc: In member function 'void SensorNG2::ReadNG2R(char*, int)': Sensor.NG2.cc:163: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result mv -f .deps/Sensor.NG2.Tpo .deps/Sensor.NG2.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.NG2.so Sensor.NG2.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' Making all in NStart make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.NStart.o -MD -MP -MF .deps/Sensor.NStart.Tpo -c -o Sensor.NStart.o Sensor.NStart.cc mv -f .deps/Sensor.NStart.Tpo .deps/Sensor.NStart.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.NStart.so Sensor.NStart.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' Making all in PatConst make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.PatConst.o -MD -MP -MF .deps/Sensor.PatConst.Tpo -c -o Sensor.PatConst.o Sensor.PatConst.cc mv -f .deps/Sensor.PatConst.Tpo .deps/Sensor.PatConst.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.PatConst.so Sensor.PatConst.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' Making all in PepSignal make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.PepSignal.o -MD -MP -MF .deps/Sensor.PepSignal.Tpo -c -o Sensor.PepSignal.o Sensor.PepSignal.cc mv -f .deps/Sensor.PepSignal.Tpo .deps/Sensor.PepSignal.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.PepSignal.so Sensor.PepSignal.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' Making all in Plotter make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Plotter.o -MD -MP -MF .deps/Sensor.Plotter.Tpo -c -o Sensor.Plotter.o Sensor.Plotter.cc mv -f .deps/Sensor.Plotter.Tpo .deps/Sensor.Plotter.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Plotter.so Sensor.Plotter.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' Making all in Repeat make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Repeat.o -MD -MP -MF .deps/Sensor.Repeat.Tpo -c -o Sensor.Repeat.o Sensor.Repeat.cc mv -f .deps/Sensor.Repeat.Tpo .deps/Sensor.Repeat.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Repeat.so Sensor.Repeat.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' Making all in Riken make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Riken.o -MD -MP -MF .deps/Sensor.Riken.Tpo -c -o Sensor.Riken.o Sensor.Riken.cc mv -f .deps/Sensor.Riken.Tpo .deps/Sensor.Riken.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Riken.so Sensor.Riken.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' Making all in SMachine make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.SMachine.o -MD -MP -MF .deps/Sensor.SMachine.Tpo -c -o Sensor.SMachine.o Sensor.SMachine.cc Sensor.SMachine.cc: In member function 'void SensorSMachine::ReadSMachineSplices(char*, int)': Sensor.SMachine.cc:174: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result Sensor.SMachine.cc: In member function 'void SensorSMachine::SpliceMachine()': Sensor.SMachine.cc:398: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result mv -f .deps/Sensor.SMachine.Tpo .deps/Sensor.SMachine.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.SMachine.so Sensor.SMachine.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' Making all in SPred make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.SPred.o -MD -MP -MF .deps/Sensor.SPred.Tpo -c -o Sensor.SPred.o Sensor.SPred.cc mv -f .deps/Sensor.SPred.Tpo .deps/Sensor.SPred.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.SPred.so Sensor.SPred.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' Making all in SpliceWAM make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.SpliceWAM.o -MD -MP -MF .deps/Sensor.SpliceWAM.Tpo -c -o Sensor.SpliceWAM.o Sensor.SpliceWAM.cc In file included from ../0_SensorTk/WAM.cc:25, from Sensor.SpliceWAM.h:27, from Sensor.SpliceWAM.cc:23: ../0_SensorTk/markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': ../0_SensorTk/markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/Sensor.SpliceWAM.Tpo .deps/Sensor.SpliceWAM.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.SpliceWAM.so Sensor.SpliceWAM.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' Making all in StartWAM make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.StartWAM.o -MD -MP -MF .deps/Sensor.StartWAM.Tpo -c -o Sensor.StartWAM.o Sensor.StartWAM.cc In file included from ../0_SensorTk/WAM.cc:25, from Sensor.StartWAM.h:26, from Sensor.StartWAM.cc:23: ../0_SensorTk/markov.cc: In function 'int fichier2protmat(FILE*, ProtMat*&)': ../0_SensorTk/markov.cc:908: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:911: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result ../0_SensorTk/markov.cc:938: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result mv -f .deps/Sensor.StartWAM.Tpo .deps/Sensor.StartWAM.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.StartWAM.so Sensor.StartWAM.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' Making all in Tester make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Tester.o -MD -MP -MF .deps/Sensor.Tester.Tpo -c -o Sensor.Tester.o Sensor.Tester.cc mv -f .deps/Sensor.Tester.Tpo .deps/Sensor.Tester.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Tester.so Sensor.Tester.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' Making all in Transcript make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Transcript.o -MD -MP -MF .deps/Sensor.Transcript.Tpo -c -o Sensor.Transcript.o Sensor.Transcript.cc mv -f .deps/Sensor.Transcript.Tpo .deps/Sensor.Transcript.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.Transcript.so Sensor.Transcript.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' Making all in QualData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.QualData.o -MD -MP -MF .deps/Sensor.QualData.Tpo -c -o Sensor.QualData.o Sensor.QualData.cc mv -f .deps/Sensor.QualData.Tpo .deps/Sensor.QualData.Po i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -o Sensor.QualData.so Sensor.QualData.o -lz -lpng -lm -lgd -lgcc -ldl -lc make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making all in plugins make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' cp -f ../src/SensorPlugins/*/*.so . make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' >>> Source compiled. >>> Test phase [check]: sci-biology/eugene-3.5d make -j14 -j1 check Making check in src make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making check in Parametrization make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' Making check in GDIF make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' Making check in . make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making check in SensorPlugins make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' Making check in 0_SensorTk make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' Making check in GetData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' Making check in AnnotaStruct make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' Making check in BlastX make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' Making check in Est make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' Making check in EuStop make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' Making check in FrameShift make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' Making check in GCPlot make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' Making check in GFF make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' Making check in GSplicer make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' Making check in Homology make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' Making check in IfElse make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' Making check in MarkovConst make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' Making check in MarkovIMM make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' Making check in GetData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' Making check in MarkovProt make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' Making check in GetData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' Making check in NG2 make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' Making check in NStart make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' Making check in PatConst make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' Making check in PepSignal make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' Making check in Plotter make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' Making check in Repeat make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' Making check in Riken make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' Making check in SMachine make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' Making check in SPred make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' Making check in SpliceWAM make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' Making check in StartWAM make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' Making check in Tester make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' Making check in Transcript make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' Making check in QualData make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making check in plugins make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make check-DEJAGNU make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' Making a new site.exp file... srcdir=`CDPATH="${ZSH_VERSION+.}:" && cd . && pwd`; export srcdir; \ EXPECT=expect; export EXPECT; \ runtest=runtest; \ if /bin/sh -c "$runtest --version" > /dev/null 2>&1; then \ exit_status=0; l='eugene'; for tool in $l; do \ if $runtest --tool TestSuite --srcdir Test --objdir . --outdir Test/TestTrace ; \ then :; else exit_status=1; fi; \ done; \ else echo "WARNING: could not find \`runtest'" 1>&2; :;\ fi; \ exit $exit_status WARNING: Couldn't find the global config file. WARNING: Couldn't find tool init file couldn't open "Test/TestTrace/TestSuite.sum": no such file or directory while executing "open "$outdir/$tool.sum" w" (procedure "open_logs" line 12) invoked from within "open_logs" (file "/usr/share/dejagnu/runtest.exp" line 1224) make[2]: *** [check-DEJAGNU] Error 1 make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[1]: *** [check-am] Error 2 make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make: *** [check-recursive] Error 1 * * ERROR: sci-biology/eugene-3.5d failed. * Call stack: * ebuild.sh, line 49: Called src_test * environment, line 2846: Called _eapi0_src_test * ebuild.sh, line 607: Called die * The specific snippet of code: * hasq test $FEATURES && die "Make check failed. See above for details." * The die message: * Make check failed. See above for details. * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/log/portage/sci-biology/eugene-3.5d:20090709-162554.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/eugene-3.5d/temp/environment'. * >>> Install eugene-3.5d into /var/tmp/portage/sci-biology/eugene-3.5d/image/ category sci-biology make -j14 DESTDIR=/var/tmp/portage/sci-biology/eugene-3.5d/image/ install Making install in src make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making install in Parametrization make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/Parametrization' Making install in GDIF make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/GDIF' Making install in . make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin" make[3]: Nothing to be done for `install-data-am'. /usr/bin/install -c 'eugene' '/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin/eugene' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making install in SensorPlugins make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' Making install in 0_SensorTk make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' Making install in GetData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin" make[5]: Nothing to be done for `install-data-am'. /usr/bin/install -c 'egn_WAMbuilder' '/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin/egn_WAMbuilder' make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk/GetData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/0_SensorTk' Making install in AnnotaStruct make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/AnnotaStruct' Making install in BlastX make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/BlastX' Making install in Est make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Est' Making install in EuStop make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/EuStop' Making install in FrameShift make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/FrameShift' Making install in GCPlot make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GCPlot' Making install in GFF make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GFF' Making install in GSplicer make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/GSplicer' Making install in Homology make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Homology' Making install in IfElse make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/IfElse' Making install in MarkovConst make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovConst' Making install in MarkovIMM make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' Making install in GetData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin" make[5]: Nothing to be done for `install-data-am'. /usr/bin/install -c 'egn_TrainIMM' '/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin/egn_TrainIMM' make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM/GetData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovIMM' Making install in MarkovProt make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' Making install in GetData make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin" make[5]: Nothing to be done for `install-data-am'. /usr/bin/install -c 'egn_buildMarkovProt' '/var/tmp/portage/sci-biology/eugene-3.5d/image//usr/bin/egn_buildMarkovProt' make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt/GetData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/MarkovProt' Making install in NG2 make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NG2' Making install in NStart make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/NStart' Making install in PatConst make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PatConst' Making install in PepSignal make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/PepSignal' Making install in Plotter make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Plotter' Making install in Repeat make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Repeat' Making install in Riken make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Riken' Making install in SMachine make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SMachine' Making install in SPred make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SPred' Making install in SpliceWAM make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/SpliceWAM' Making install in StartWAM make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/StartWAM' Making install in Tester make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Tester' Making install in Transcript make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/Transcript' Making install in QualData make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins/QualData' make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src/SensorPlugins' make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/src' Making install in plugins make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1/plugins' make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[2]: Nothing to be done for `install-exec-am'. make install-data-hook make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web/Style /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web/Javascripts /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web/Images /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/plugins /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/cfg /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models/WAM /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/Procedures /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/Procedures/Eval /usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/Procedures/Get /usr/bin/install -c -m 644 ./models/*.dist /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models /usr/bin/install -c -m 644 ./models/*.mat /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models /usr/bin/install -c -m 644 ./models/*.bin /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models /usr/bin/install -c -m 644 ./models/BLOSUM* /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models /usr/bin/install -c -m 644 ./models/WAM/WAM* /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/models/WAM /usr/bin/install -c -m 644 ./web/Style/eugene.css /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web/Style /usr/bin/install -c -m 644 ./web/Javascripts/diap.js /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web/Javascripts /usr/bin/install -c -m 644 ./web/Images/*jpg /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/web/Images /usr/bin/install -c -m 644 ./cfg/*.obo /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/cfg /usr/bin/install -c -m 644 ./cfg/*.par /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/cfg /usr/bin/install -c src/SensorPlugins/*/*.so /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/plugins /usr/bin/install -c ./Procedures/Eval/egn_* /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/Procedures/Eval /usr/bin/install -c ./Procedures/Get/egn_* /var/tmp/portage/sci-biology/eugene-3.5d/image///usr/share/eugene/Procedures/Get make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.5d/work/eugene-3.5d-1' >>> Completed installing eugene-3.5d into /var/tmp/portage/sci-biology/eugene-3.5d/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/share/eugene/plugins/Sensor.Riken.so usr/share/eugene/plugins/Sensor.NStart.so usr/share/eugene/plugins/Sensor.Transcript.so usr/share/eugene/plugins/Sensor.FrameShift.so usr/share/eugene/plugins/Sensor.Tester.so usr/share/eugene/plugins/Sensor.PepSignal.so usr/share/eugene/plugins/Sensor.Homology.so usr/share/eugene/plugins/Sensor.NG2.so usr/share/eugene/plugins/Sensor.Est.so usr/share/eugene/plugins/Sensor.MarkovIMM.so usr/share/eugene/plugins/Sensor.MarkovProt.so usr/share/eugene/plugins/Sensor.Plotter.so usr/share/eugene/plugins/Sensor.GSplicer.so usr/share/eugene/plugins/Sensor.IfElse.so usr/share/eugene/plugins/Sensor.SpliceWAM.so usr/share/eugene/plugins/Sensor.QualData.so usr/share/eugene/plugins/Sensor.GCPlot.so usr/share/eugene/plugins/Sensor.BlastX.so usr/share/eugene/plugins/Sensor.GFF.so usr/share/eugene/plugins/Sensor.PatConst.so usr/share/eugene/plugins/Sensor.StartWAM.so usr/share/eugene/plugins/Sensor.AnnotaStruct.so usr/share/eugene/plugins/Sensor.MarkovConst.so usr/share/eugene/plugins/Sensor.SMachine.so usr/share/eugene/plugins/Sensor.EuStop.so usr/share/eugene/plugins/Sensor.Repeat.so usr/share/eugene/plugins/Sensor.SPred.so usr/bin/eugene usr/bin/egn_WAMbuilder usr/bin/egn_TrainIMM usr/bin/egn_buildMarkovProt * Removing /usr/share/doc * Removing /usr/share/man * Removing /usr/share/info