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Gentoo's Bugzilla – Attachment 197253 Details for
Bug 277098
sci-biology/qrna: fails to build with glibc-2.10
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Build log
qrna-2.0.3c:20090708-202004.log (text/plain), 2.11 KB, created by
Diego Elio Pettenò (RETIRED)
on 2009-07-08 20:38:37 UTC
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Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2009-07-08 20:38:37 UTC
Size:
2.11 KB
patch
obsolete
>>>> Unpacking source... >>>> Unpacking qrna-2.0.3c.tar.bz2 to /var/tmp/portage/sci-biology/qrna-2.0.3c/work >>>> Source unpacked in /var/tmp/portage/sci-biology/qrna-2.0.3c/work >>>> Compiling source in /var/tmp/portage/sci-biology/qrna-2.0.3c/work/qrna-2.0.3c ... >make -j14 >i686-pc-linux-gnu-gcc -O2 -pipe -c aligneval.c >i686-pc-linux-gnu-gcc -O2 -pipe -c alignio.c >i686-pc-linux-gnu-gcc -O2 -pipe -c cluster.c >i686-pc-linux-gnu-gcc -O2 -pipe -c dayhoff.c >i686-pc-linux-gnu-gcc -O2 -pipe -c file.c >i686-pc-linux-gnu-gcc -O2 -pipe -c getopt.c >i686-pc-linux-gnu-gcc -O2 -pipe -c interleaved.c >i686-pc-linux-gnu-gcc -O2 -pipe -c sqerror.c >i686-pc-linux-gnu-gcc -O2 -pipe -c gnuregex.c >i686-pc-linux-gnu-gcc -O2 -pipe -c sqio.c >i686-pc-linux-gnu-gcc -O2 -pipe -c iupac.c >i686-pc-linux-gnu-gcc -O2 -pipe -c msf.c >i686-pc-linux-gnu-gcc -O2 -pipe -c revcomp.c >i686-pc-linux-gnu-gcc -O2 -pipe -c rk.c >i686-pc-linux-gnu-gcc -O2 -pipe -c selex.c >i686-pc-linux-gnu-gcc -O2 -pipe -c seqencode.c >i686-pc-linux-gnu-gcc -O2 -pipe -c sre_ctype.c >i686-pc-linux-gnu-gcc -O2 -pipe -c sre_math.c >i686-pc-linux-gnu-gcc -O2 -pipe -c sre_string.c >i686-pc-linux-gnu-gcc -O2 -pipe -c stack.c >sqio.c:218: error: conflicting types for 'getline' >/usr/include/stdio.h:651: note: previous declaration of 'getline' was here >make: *** [sqio.o] Error 1 >make: *** Waiting for unfinished jobs.... > [31;01m*[0m > [31;01m*[0m ERROR: sci-biology/qrna-2.0.3c failed. > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 49: Called src_compile > [31;01m*[0m environment, line 973: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake || die; > [31;01m*[0m The die message: > [31;01m*[0m (no error message) > [31;01m*[0m > [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant. > [31;01m*[0m A complete build log is located at '/var/log/portage/sci-biology/qrna-2.0.3c:20090708-202004.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/qrna-2.0.3c/temp/environment'. > [31;01m*[0m
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bug 277098
: 197253