* Using: sun-jdk-1.6
>>> Unpacking source...
>>> Unpacking jogl-1.1.0-src.zip to /var/tmp/portage/dev-java/jogl-1.1.0-r1/work
 * Applying uncouple-gluegen.patch ...
  [ ok ]
 * Applying fix-solaris-compiler.patch ...
  [ ok ]
removed `JOGLDocLinksGeneratorAndLibs.jar'
removed `cpptasks.jar'
>>> Source unpacked in /var/tmp/portage/dev-java/jogl-1.1.0-r1/work
>>> Compiling source in /var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl ...
Rewriting attributes
Rewriting ./make/build.xml
 * Using following ANT_TASKS: ant-antlr
Buildfile: build.xml

gluegen.cpptasks.detect.os.1:
     [echo] FreeBSD=${isFreeBSD}
     [echo] HPUX=${isHPUX}
     [echo] IA64=${isIA64}
     [echo] Linux=true
     [echo] LinuxAMD64=${isLinuxAMD64}
     [echo] LinuxIA64=${isLinuxIA64}
     [echo] LinuxX86=true
     [echo] OS X=${isOSX}
     [echo] Solaris=${isSolaris}
     [echo] Solaris32Bit=${isSolaris32Bit}
     [echo] SolarisSparc=${isSolarisSparc}
     [echo] SolarisSparcv9=${isSolarisSparcv9}
     [echo] SolarisAMD64=${isSolarisAMD64}
     [echo] SolarisX86=${isSolarisX86}
     [echo] Unix=true
     [echo] Windows=${isWindows}
     [echo] X11=true

gluegen.cpptasks.detect.os.freebsd:

gluegen.cpptasks.detect.os.hpux:

gluegen.cpptasks.detect.os.linux.amd64:

gluegen.cpptasks.detect.os.linux.ia64:

gluegen.cpptasks.detect.os.linux.x86:

gluegen.cpptasks.detect.os.linux:

gluegen.cpptasks.detect.os.osx.ppc:

gluegen.cpptasks.detect.os.osx.universal:

gluegen.cpptasks.detect.os.osx:

gluegen.cpptasks.detect.os.solaris.sparc:

gluegen.cpptasks.detect.os.solaris.sparcv9:

gluegen.cpptasks.detect.os.solaris.amd64:

gluegen.cpptasks.detect.os.solaris.x86:

gluegen.cpptasks.detect.os.solaris:

gluegen.cpptasks.detect.os.unix:

gluegen.cpptasks.detect.os.windows.amd64:

gluegen.cpptasks.detect.os.windows.x86:

gluegen.cpptasks.detect.os.windows:

gluegen.cpptasks.detect.os.2:

gluegen.cpptasks.detect.os:

base.init:

base.init.sourcelevel.1:

base.init.sourcelevel.2:

load.user.properties:
     [echo] Loaded /root/jogl.properties.
     [echo] Loaded /root/gluegen.properties.
     [echo] antlr.jar=/usr/share/antlr/lib/antlr.jar

setup.java.home.dir.nonmacosx:

setup.java.home.dir.macosx:

setup.java.home.dir:

gluegen.cpptasks.detect.compiler:
     [echo] VC6=${isVC6}
     [echo] VC7=${isVC7}
     [echo] VC8=${isVC8}
     [echo] MingW=${isMingW}

declare.common:

init:

antlr.jar.validate:

java.home.dir.validate:

java.class.path.validate:

validate:
    [mkdir] Created dir: /var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/build/gensrc/native/jogl
    [mkdir] Created dir: /var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/build/classes
    [mkdir] Created dir: /var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/build/obj
    [mkdir] Created dir: /var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/build/obj/jogl
    [mkdir] Created dir: /var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/build/obj/jogl_cg

declare.win32.vc6:

declare.win32.vc7:

declare.win32.vc8:

declare.win32.vc8_x64:

declare.win32.mingw:

declare.win32:

declare.linux.x86:
     [echo] Linux.x86

declare.linux.amd64:

declare.linux.ia64:

declare.x11:

declare.linux:

declare.solaris32:

declare.solaris.sparcv9:

declare.solaris.amd64:

declare.macosx:

declare.freebsd:

declare.hpux:

declare:

all:

gluegen.cpptasks.detect.os.1:

gluegen.cpptasks.detect.os.freebsd:

gluegen.cpptasks.detect.os.hpux:

gluegen.cpptasks.detect.os.linux.amd64:

gluegen.cpptasks.detect.os.linux.ia64:

gluegen.cpptasks.detect.os.linux.x86:

gluegen.cpptasks.detect.os.linux:

gluegen.cpptasks.detect.os.osx.ppc:

gluegen.cpptasks.detect.os.osx.universal:

gluegen.cpptasks.detect.os.osx:

gluegen.cpptasks.detect.os.solaris.sparc:

gluegen.cpptasks.detect.os.solaris.sparcv9:

gluegen.cpptasks.detect.os.solaris.amd64:

gluegen.cpptasks.detect.os.solaris.x86:

gluegen.cpptasks.detect.os.solaris:

gluegen.cpptasks.detect.os.unix:

gluegen.cpptasks.detect.os.windows.amd64:

gluegen.cpptasks.detect.os.windows.x86:

gluegen.cpptasks.detect.os.windows:

gluegen.cpptasks.detect.os.2:

gluegen.cpptasks.detect.os:

base.init:

base.init.sourcelevel.1:

base.init.sourcelevel.2:

load.user.properties:

setup.java.home.dir.nonmacosx:

setup.java.home.dir.macosx:

setup.java.home.dir:

gluegen.cpptasks.detect.compiler:
     [echo] VC6=${isVC6}
     [echo] VC7=${isVC7}
     [echo] VC8=${isVC8}
     [echo] MingW=${isMingW}

declare.common:

init:

antlr.jar.validate:

java.home.dir.validate:

java.class.path.validate:

validate:

build.gluegen:

java.generate.check:

java.generate:

java.generate.gl:
     [echo] Generating GL interface and implementation
  [gluegen] WARNING: unable to find #include file "inttypes.h"
  [gluegen] WARNING: unable to find #include file "inttypes.h"
  [gluegen] WARNING: unable to find #include file "stdint.h"
  [gluegen] WARNING: unable to find #include file "stdint.h"

java.generate.gl.nsig:
     [echo] Generating platform-specific OpenGL extension class
  [gluegen] WARNING: unable to find #include file "inttypes.h"
  [gluegen] WARNING: unable to find #include file "inttypes.h"
  [gluegen] WARNING: unable to find #include file "stdint.h"
  [gluegen] WARNING: unable to find #include file "stdint.h"
  [gluegen] WARNING: skipping emission of unnamed struct "struct { }"
  [gluegen] WARNING: skipping emission of unnamed struct "struct { }"
  [gluegen] WARNING: skipping emission of unnamed struct "struct { }"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXFBConfigRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXFBConfigRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXFBConfigRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXcontextRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXcontextRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXcontextRec"
     [echo] Generating WGL/GLX/CGL implementation class
  [gluegen] WARNING: unable to find #include file "inttypes.h"
  [gluegen] WARNING: unable to find #include file "inttypes.h"
  [gluegen] WARNING: unable to find #include file "stdint.h"
  [gluegen] WARNING: unable to find #include file "stdint.h"
  [gluegen] WARNING: "GLX_DRAWABLE_TYPE" redefined from "0x8010" to "0x8010"
  [gluegen] WARNING: "GLX_WINDOW_BIT" redefined from "0x00000001" to "0x00000001"
  [gluegen] WARNING: "GLX_PIXMAP_BIT" redefined from "0x00000002" to "0x00000002"
  [gluegen] WARNING: "GLX_PBUFFER_BIT" redefined from "0x00000004" to "0x00000004"
  [gluegen] WARNING: "GLX_RGBA_BIT" redefined from "0x00000001" to "0x00000001"
  [gluegen] WARNING: "GLX_COLOR_INDEX_BIT" redefined from "0x00000002" to "0x00000002"
  [gluegen] WARNING: "GLX_PBUFFER_CLOBBER_MASK" redefined from "0x08000000" to "0x08000000"
  [gluegen] WARNING: "GLX_FRONT_LEFT_BUFFER_BIT" redefined from "0x00000001" to "0x00000001"
  [gluegen] WARNING: "GLX_FRONT_RIGHT_BUFFER_BIT" redefined from "0x00000002" to "0x00000002"
  [gluegen] WARNING: "GLX_BACK_LEFT_BUFFER_BIT" redefined from "0x00000004" to "0x00000004"
  [gluegen] WARNING: "GLX_BACK_RIGHT_BUFFER_BIT" redefined from "0x00000008" to "0x00000008"
  [gluegen] WARNING: "GLX_AUX_BUFFERS_BIT" redefined from "0x00000010" to "0x00000010"
  [gluegen] WARNING: "GLX_DEPTH_BUFFER_BIT" redefined from "0x00000020" to "0x00000020"
  [gluegen] WARNING: "GLX_STENCIL_BUFFER_BIT" redefined from "0x00000040" to "0x00000040"
  [gluegen] WARNING: "GLX_ACCUM_BUFFER_BIT" redefined from "0x00000080" to "0x00000080"
  [gluegen] WARNING: "GLX_CONFIG_CAVEAT" redefined from "0x20" to "0x20"
  [gluegen] WARNING: "GLX_X_VISUAL_TYPE" redefined from "0x22" to "0x22"
  [gluegen] WARNING: "GLX_TRANSPARENT_TYPE" redefined from "0x23" to "0x23"
  [gluegen] WARNING: "GLX_TRANSPARENT_INDEX_VALUE" redefined from "0x24" to "0x24"
  [gluegen] WARNING: "GLX_TRANSPARENT_RED_VALUE" redefined from "0x25" to "0x25"
  [gluegen] WARNING: "GLX_TRANSPARENT_GREEN_VALUE" redefined from "0x26" to "0x26"
  [gluegen] WARNING: "GLX_TRANSPARENT_BLUE_VALUE" redefined from "0x27" to "0x27"
  [gluegen] WARNING: "GLX_TRANSPARENT_ALPHA_VALUE" redefined from "0x28" to "0x28"
  [gluegen] WARNING: "GLX_DONT_CARE" redefined from "0xFFFFFFFF" to "0xFFFFFFFF"
  [gluegen] WARNING: "GLX_NONE" redefined from "0x8000" to "0x8000"
  [gluegen] WARNING: "GLX_SLOW_CONFIG" redefined from "0x8001" to "0x8001"
  [gluegen] WARNING: "GLX_TRUE_COLOR" redefined from "0x8002" to "0x8002"
  [gluegen] WARNING: "GLX_DIRECT_COLOR" redefined from "0x8003" to "0x8003"
  [gluegen] WARNING: "GLX_PSEUDO_COLOR" redefined from "0x8004" to "0x8004"
  [gluegen] WARNING: "GLX_STATIC_COLOR" redefined from "0x8005" to "0x8005"
  [gluegen] WARNING: "GLX_GRAY_SCALE" redefined from "0x8006" to "0x8006"
  [gluegen] WARNING: "GLX_STATIC_GRAY" redefined from "0x8007" to "0x8007"
  [gluegen] WARNING: "GLX_TRANSPARENT_RGB" redefined from "0x8008" to "0x8008"
  [gluegen] WARNING: "GLX_TRANSPARENT_INDEX" redefined from "0x8009" to "0x8009"
  [gluegen] WARNING: "GLX_VISUAL_ID" redefined from "0x800B" to "0x800B"
  [gluegen] WARNING: "GLX_SCREEN" redefined from "0x800C" to "0x800C"
  [gluegen] WARNING: "GLX_NON_CONFORMANT_CONFIG" redefined from "0x800D" to "0x800D"
  [gluegen] WARNING: "GLX_DRAWABLE_TYPE" redefined from "0x8010" to "0x8010"
  [gluegen] WARNING: "GLX_RENDER_TYPE" redefined from "0x8011" to "0x8011"
  [gluegen] WARNING: "GLX_X_RENDERABLE" redefined from "0x8012" to "0x8012"
  [gluegen] WARNING: "GLX_FBCONFIG_ID" redefined from "0x8013" to "0x8013"
  [gluegen] WARNING: "GLX_RGBA_TYPE" redefined from "0x8014" to "0x8014"
  [gluegen] WARNING: "GLX_COLOR_INDEX_TYPE" redefined from "0x8015" to "0x8015"
  [gluegen] WARNING: "GLX_MAX_PBUFFER_WIDTH" redefined from "0x8016" to "0x8016"
  [gluegen] WARNING: "GLX_MAX_PBUFFER_HEIGHT" redefined from "0x8017" to "0x8017"
  [gluegen] WARNING: "GLX_MAX_PBUFFER_PIXELS" redefined from "0x8018" to "0x8018"
  [gluegen] WARNING: "GLX_PRESERVED_CONTENTS" redefined from "0x801B" to "0x801B"
  [gluegen] WARNING: "GLX_LARGEST_PBUFFER" redefined from "0x801C" to "0x801C"
  [gluegen] WARNING: "GLX_WIDTH" redefined from "0x801D" to "0x801D"
  [gluegen] WARNING: "GLX_HEIGHT" redefined from "0x801E" to "0x801E"
  [gluegen] WARNING: "GLX_EVENT_MASK" redefined from "0x801F" to "0x801F"
  [gluegen] WARNING: "GLX_DAMAGED" redefined from "0x8020" to "0x8020"
  [gluegen] WARNING: "GLX_SAVED" redefined from "0x8021" to "0x8021"
  [gluegen] WARNING: "GLX_WINDOW" redefined from "0x8022" to "0x8022"
  [gluegen] WARNING: "GLX_PBUFFER" redefined from "0x8023" to "0x8023"
  [gluegen] WARNING: "GLX_PBUFFER_HEIGHT" redefined from "0x8040" to "0x8040"
  [gluegen] WARNING: "GLX_PBUFFER_WIDTH" redefined from "0x8041" to "0x8041"
  [gluegen] WARNING: "GLX_SAMPLE_BUFFERS" redefined from "0x186a0" to "100000"
  [gluegen] WARNING: "GLX_SAMPLES" redefined from "0x186a1" to "100001"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXFBConfigRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXFBConfigRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXFBConfigRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct { }"
  [gluegen] WARNING: skipping emission of unnamed struct "struct { }"
  [gluegen] WARNING: skipping emission of unnamed struct "struct { }"
  [gluegen] WARNING: Array fields (field "char[80] pipeName;" of type "GLXHyperpipeNetworkSGIX") not implemented yet
  [gluegen] WARNING: Array fields (field "char[80] pipeName;" of type "GLXHyperpipeNetworkSGIX") not implemented yet
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXcontextRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXcontextRec"
  [gluegen] WARNING: skipping emission of unnamed struct "struct __GLXcontextRec"
  [gluegen] WARNING: Array fields (field "char[80] pipeName;" of type "GLXHyperpipeConfigSGIX") not implemented yet
  [gluegen] WARNING: Array fields (field "char[80] pipeName;" of type "GLXHyperpipeConfigSGIX") not implemented yet
  [gluegen] java.lang.RuntimeException: Error while generating bindings for "GLXFBConfig *  glXChooseFBConfig(Display *  dpy, int screen, const int *  attribList, int *  nitems);"
  [gluegen] 	at com.sun.gluegen.JavaEmitter.generateMethodBindingEmitters(JavaEmitter.java:630)
  [gluegen] 	at com.sun.gluegen.procaddress.ProcAddressEmitter.generateMethodBindingEmittersImpl(ProcAddressEmitter.java:117)
  [gluegen] 	at com.sun.gluegen.procaddress.ProcAddressEmitter.generateMethodBindingEmitters(ProcAddressEmitter.java:103)
  [gluegen] 	at com.sun.gluegen.JavaEmitter.emitFunctions(JavaEmitter.java:282)
  [gluegen] 	at com.sun.gluegen.GlueGen.run(GlueGen.java:283)
  [gluegen] 	at com.sun.gluegen.GlueGen.main(GlueGen.java:297)
  [gluegen] Caused by: java.lang.NullPointerException
  [gluegen] 	at com.sun.gluegen.JavaType.descriptor(JavaType.java:547)
  [gluegen] 	at com.sun.gluegen.JavaType.getDescriptor(JavaType.java:252)
  [gluegen] 	at com.sun.gluegen.MethodBinding.erasedTypeDescriptor(MethodBinding.java:590)
  [gluegen] 	at com.sun.gluegen.MethodBinding.getDescriptor(MethodBinding.java:569)
  [gluegen] 	at com.sun.gluegen.JavaConfiguration.javaPrologueForMethod(JavaConfiguration.java:664)
  [gluegen] 	at com.sun.gluegen.opengl.GLConfiguration.javaPrologueForMethod(GLConfiguration.java:120)
  [gluegen] 	at com.sun.gluegen.JavaEmitter.generatePublicEmitters(JavaEmitter.java:346)
  [gluegen] 	at com.sun.gluegen.JavaEmitter.generateMethodBindingEmitters(JavaEmitter.java:625)
  [gluegen] 	... 5 more
  [gluegen] Exception occurred while generating glue code. Exiting.

BUILD FAILED
/var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/make/build.xml:1310: The following error occurred while executing this line:
/var/tmp/portage/dev-java/jogl-1.1.0-r1/work/jogl/make/build.xml:483: GlueGen returned: 1

Total time: 18 seconds
 * 
 * ERROR: dev-java/jogl-1.1.0-r1 failed.
 * Call stack:
 *               ebuild.sh, line   48:  Called src_compile
 *             environment, line 4100:  Called eant '-Dgentoo.classpath=/usr/share/ant-core/lib/ant-launcher.jar:/usr/share/ant-core/lib/ant.jar:/usr/share/ant-core/lib/ant-bootstrap.jar:/opt/sun-jdk-1.6.0.13/lib/tools.jar' '-Dantlr.jar=/usr/share/antlr/lib/antlr.jar' '-Dgluegen.jar=/usr/share/gluegen/lib/gluegen.jar' '-Dgluegen-rt.jar=/usr/share/gluegen/lib/gluegen-rt.jar' 'all' 'javadoc'
 *             environment, line  914:  Called die
 * The specific snippet of code:
 *       ant ${antflags} "${@}" || die "eant failed"
 *  The die message:
 *   eant failed
 * 
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/tmp/portage/dev-java/jogl-1.1.0-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-java/jogl-1.1.0-r1/temp/environment'.
 * This ebuild is from an overlay named 'java-overlay': '/usr/local/portage/layman/java-overlay/'
 * 
!!! When you file a bug report, please include the following information:
GENTOO_VM=sun-jdk-1.6  CLASSPATH="" JAVA_HOME="/opt/sun-jdk-1.6.0.13"
JAVACFLAGS="-source 1.4 -target 1.4" COMPILER="javac"
and of course, the output of emerge --info