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Gentoo's Bugzilla – Attachment 184708 Details for
Bug 262143
sci-chemistry/mpqc-2.3.1-r1 fails to find lapack during configure even if it is installed
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build log
build.log (text/plain), 9.52 KB, created by
lumbrius
on 2009-03-11 15:18:47 UTC
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Description:
build log
Filename:
MIME Type:
Creator:
lumbrius
Created:
2009-03-11 15:18:47 UTC
Size:
9.52 KB
patch
obsolete
> [32;01m*[0m You need one of these Fortran Compilers: gfortran g77 > [32;01m*[0m Installed are: gfortran >>>> Unpacking source... >>>> Unpacking mpqc-2.3.1.tar.bz2 to /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r1/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r1/work >>>> Compiling source in /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r1/work/mpqc-2.3.1 ... > * econf: updating mpqc-2.3.1/bin/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpqc-2.3.1/bin/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-threads --enable-shared --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking whether ln -s works... yes >checking for a BSD-compatible install... /usr/bin/install -c >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed >checking for g++... g++ >checking for x86_64-pc-linux-gnu-g++... (cached) g++ >checking whether we are using the GNU C++ compiler... yes >checking whether g++ accepts -g... yes >checking for x86_64-pc-linux-gnu-g77... no >checking for x86_64-pc-linux-gnu-f77... no >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-frt... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-fort77... no >checking for x86_64-pc-linux-gnu-fl32... no >checking for x86_64-pc-linux-gnu-af77... no >checking for x86_64-pc-linux-gnu-f90... no >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-pgf90... no >checking for x86_64-pc-linux-gnu-epcf90... no >checking for x86_64-pc-linux-gnu-f95... no >checking for x86_64-pc-linux-gnu-fort... no >checking for x86_64-pc-linux-gnu-xlf95... no >checking for x86_64-pc-linux-gnu-ifc... no >checking for x86_64-pc-linux-gnu-efc... no >checking for x86_64-pc-linux-gnu-pgf95... no >checking for x86_64-pc-linux-gnu-lf95... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.2/../../.. -lgfortranbegin -lgfortran -lm -lgcc_s >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking how to run the C++ preprocessor... g++ -E >checking for ar... ar >checking for perl... perl >checking for wish... no >checking for dot... NO >checking for miscellaneous flags... none >checking for special optimization options... "none" >checking for C++ cpu tuning flag... -mcpu >checking for C cpu tuning flag... -mcpu >checking for special architecture options... "none" >checking "for C++ typename keyword"... "yes" >checking for egrep... grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking iostream usability... yes >checking iostream presence... yes >checking for iostream... yes >checking sstream usability... yes >checking sstream presence... yes >checking for sstream... yes >checking iostream name... iostream >checking "for namespace std"... "yes" >checking "for GNU libc++-v3 prerelease bug"... "no" >checking fp.h usability... no >checking fp.h presence... no >checking for fp.h... no >checking endian.h usability... yes >checking endian.h presence... yes >checking for endian.h... yes >checking machine/endian.h usability... no >checking machine/endian.h presence... no >checking for machine/endian.h... no >checking sys/endian.h usability... no >checking sys/endian.h presence... no >checking for sys/endian.h... no >checking sys/machine.h usability... no >checking sys/machine.h presence... no >checking for sys/machine.h... no >checking whether byte ordering is bigendian... no >checking for main in -ldl... yes >checking for main in -lm... yes >checking for main in -lfl... yes >checking perf.h usability... no >checking perf.h presence... no >checking for perf.h... no >checking execinfo.h usability... yes >checking execinfo.h presence... yes >checking for execinfo.h... yes >checking for backtrace... yes >checking for backtrace_symbols_fd... yes >checking for mpi.h... no >checking armci.h usability... no >checking armci.h presence... no >checking for armci.h... no >checking for ANSI C header files... (cached) yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking sys/ioctl.h usability... yes >checking sys/ioctl.h presence... yes >checking for sys/ioctl.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking pwd.h usability... yes >checking pwd.h presence... yes >checking for pwd.h... yes >checking sys/times.h usability... yes >checking sys/times.h presence... yes >checking for sys/times.h... yes >checking sys/resource.h usability... yes >checking sys/resource.h presence... yes >checking for sys/resource.h... yes >checking time.h usability... yes >checking time.h presence... yes >checking for time.h... yes >checking machine/fpu.h usability... no >checking machine/fpu.h presence... no >checking for machine/fpu.h... no >checking asm/fpu.h usability... no >checking asm/fpu.h presence... no >checking for asm/fpu.h... no >checking termios.h usability... yes >checking termios.h presence... yes >checking for termios.h... yes >checking for sys/stat.h... (cached) yes >checking for sys/types.h... (cached) yes >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking for stdint.h... (cached) yes >checking for an ANSI C-conforming const... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking return type of signal handlers... void >checking for vprintf... yes >checking for _doprnt... no >checking for strerror... yes >checking for sigfillset... yes >checking for signal... yes >checking for system... yes >checking for getpwuid... yes >checking for geteuid... yes >checking for gethostname... yes >checking for time... yes >checking for ctime... yes >checking for setrlimit... yes >checking for setenv... yes >checking isnan and iostream... yes >checking fenv.h usability... yes >checking fenv.h presence... yes >checking for fenv.h... yes >checking for feenableexcept... yes >checking for fedisableexcept... yes >checking fchdir... yes >checking ios::fmtflags... yes >checking long long... yes >checking sgetn... yes >checking pubseekoff... yes >checking seekoff... no >checking signal handler needs ellipsis... no >checking for drand48... yes >checking for shmget... yes >checking for semget... yes >checking sys/ipc.h usability... yes >checking sys/ipc.h presence... yes >checking for sys/ipc.h... yes >checking sys/sem.h usability... yes >checking sys/sem.h presence... yes >checking for sys/sem.h... yes >checking sys/shm.h usability... yes >checking sys/shm.h presence... yes >checking for sys/shm.h... yes >checking for SYSV IPC... yes >checking if semctl requires semun... no >checking if fortran compiler works... yes >checking fortran symbols... lowercase with underscore >checking for daxpy_... no >checking for daxpy_ in -lessl... no >checking for daxpy_ in -lblas... yes >checking for dgesvd_... no >checking for dgesvd_ in -llapack... no >Could not link to the LAPACK library. It can be obtained at >http://www.netlib.org/lapack. Use --with-libdirs and/or --with-libs >to specify the name of the library. >configure: error: LAPACK is required to complete the build > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r1/work/mpqc-2.3.1/config.log > [31;01m*[0m > [31;01m*[0m ERROR: sci-chemistry/mpqc-2.3.1-r1 failed. > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 49: Called src_compile > [31;01m*[0m environment, line 2821: Called econf '--disable-threads' '--enable-shared' > [31;01m*[0m ebuild.sh, line 543: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "econf failed" > [31;01m*[0m The die message: > [31;01m*[0m econf failed > [31;01m*[0m > [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant. > [31;01m*[0m A complete build log is located at '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r1/temp/environment'. > [31;01m*[0m
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bug 262143
: 184708