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Gentoo's Bugzilla – Attachment 181900 Details for
Bug 253451
[new ebuild] sci-biology/consed-19
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consed-19.ebuild
consed-19.ebuild (text/plain), 1.48 KB, created by
Andrey Kislyuk (RETIRED)
on 2009-02-13 19:18:17 UTC
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consed-19.ebuild
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Creator:
Andrey Kislyuk (RETIRED)
Created:
2009-02-13 19:18:17 UTC
Size:
1.48 KB
patch
obsolete
># Copyright 1999-2009 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: $ > >inherit toolchain-funcs > >DESCRIPTION="Consed: a genome sequence finishing program" >HOMEPAGE="http://bozeman.mbt.washington.edu/consed/consed.html" >SRC_URI="consed-19-sources.tar.gz > consed-19-linux.tar.gz" > >LICENSE="phrap" >SLOT="0" >KEYWORDS="~x86 ~amd64" >IUSE="" > >DEPEND="x11-libs/openmotif" >RDEPEND="${DEPEND} > >=sci-biology/phrap-1.080721" > >S="${WORKDIR}" > >RESTRICT="fetch" > >pkg_nofetch() { > einfo "Please visit ${HOMEPAGE} and obtain the file" > einfo "\"sources.tar.gz\", then rename it to \"consed-${PV}-sources.tar.gz\"" > einfo "and place it in ${DISTDIR}," > einfo "obtain the file" > einfo "\"consed_linux.tar.gz\", then rename it to \"consed-${PV}-linux.tar.gz\"" > einfo "and place it in ${DISTDIR}" >} > >src_unpack() { > unpack ${A} > # todo: cflags > sed -i '/#include/ s/<new.h>/<new>/' "${S}/main.cpp" || die > sed -i '/lib/ s/X11R6//g' "${S}/makefile" || die >} > >src_compile() { > emake || die > emake -C misc/mktrace || die > emake -C misc/phd2fasta || die > (cd misc/454; $(tc-getCC) ${CFLAGS} sff2scf.c -o sff2scf) || die >} > >src_install() { > dobin consed misc/{mktrace/mktrace,phd2fasta/phd2fasta,454/sff2scf} || die > dobin scripts/* || die > insinto /usr/share/${PN}/examples > doins -r standard polyphred autofinish assembly_view 454_newbler align454reads align454reads_answer solexa_example solexa_example_answer selectRegions selectRegionsAnswer || die > dodoc README.txt *_announcement.txt >}
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bug 253451
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