phd2fasta-20080822.ebuild

phd2fasta-20080822.ebuild (text/plain), 1.08 KB, created by Martin Mokrejš on 2009-01-01 16:52:14 UTC

# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

DESCRIPTION="Phd2fasta: Phred and consed write sequence and quality value information in
'phd' output files. A phd file contains information in a header,
the called bases, the base quality values, and the base call trace
locations.  Phd2fasta reads phd files and writes sequence and quality
value FASTA files, which phrap and cross_match need as input.
(Consed needs phd files in order to obtain the base call locations.)"
HOMEPAGE="http://www.phrap.org/"
SRC_URI="phd2fasta-acd-dist.tar.Z"

LICENSE="phrap"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""

DEPEND=""
RDEPEND=""

S="${WORKDIR}"

RESTRICT="fetch"

pkg_nofetch() {
	einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file"
	einfo '"phd2fasta-acd-dist.tar.Z".'
}

src_compile() {
	#FIXME: propagate $CFLAGS into the Makefile
	sed -i 's/#LXFLAGS= -DX86_GCC_LINUX/LXFLAGS= -DX86_GCC_LINUX/' Makefile
	emake || die "emake failed"
}

src_install() {
	dobin phd2fasta
	newdoc PHD2FASTA.DOC phd2fasta.txt
}