Build log

beagle-3.0.1:20081219-103425.log (text/plain), 19.24 KB, created by Diego Elio Pettenò (RETIRED) on 2008-12-19 13:07:08 UTC

>>> Unpacking source...
>>> Unpacking beagle-3.0.1.tar.gz to /var/tmp/portage/sci-libs/beagle-3.0.1/work
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1 ...
 * econf: updating beagle-3.0.1/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/zeromin/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/zeromin/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/maxfctes/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/maxfctes/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/maxfctfloat/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/maxfctfloat/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/maxfct/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/maxfct/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/tsp/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/tsp/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/onemax/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/onemax/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GA/knapsack/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GA/knapsack/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/Coev/coev_symbreg/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/Coev/coev_symbreg/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/Coev/ipd/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/Coev/ipd/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GP/parity/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GP/parity/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GP/spambase/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GP/spambase/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating beagle-3.0.1/examples/GP/symbreg/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating beagle-3.0.1/examples/GP/symbreg/config/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-optimization --build=i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for egrep... grep -E
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/i686-pc-linux-gnu-nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking for i686-pc-linux-gnu-g77... no
checking for i686-pc-linux-gnu-f77... no
checking for i686-pc-linux-gnu-xlf... no
checking for i686-pc-linux-gnu-frt... no
checking for i686-pc-linux-gnu-pgf77... no
checking for i686-pc-linux-gnu-fort77... no
checking for i686-pc-linux-gnu-fl32... no
checking for i686-pc-linux-gnu-af77... no
checking for i686-pc-linux-gnu-f90... no
checking for i686-pc-linux-gnu-xlf90... no
checking for i686-pc-linux-gnu-pgf90... no
checking for i686-pc-linux-gnu-epcf90... no
checking for i686-pc-linux-gnu-f95... no
checking for i686-pc-linux-gnu-fort... no
checking for i686-pc-linux-gnu-xlf95... no
checking for i686-pc-linux-gnu-ifc... no
checking for i686-pc-linux-gnu-efc... no
checking for i686-pc-linux-gnu-pgf95... no
checking for i686-pc-linux-gnu-lf95... no
checking for i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether i686-pc-linux-gnu-gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/i686-pc-linux-gnu-nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip
checking if i686-pc-linux-gnu-gcc static flag  works... yes
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for i686-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking for ANSI C header files... (cached) yes
checking whether the compiler recognizes bool as a built-in type... yes
checking for long long int... yes
checking whether the compiler supports isfinite macro... no
checking whether the compiler supports basic templates... yes
checking whether the compiler recognizes typename... yes
checking whether the compiler supports function matching with argument types which are template scope-qualified... yes
checking whether the compiler supports default template parameters... yes
checking whether the compiler supports template-qualified base class specifiers... no
checking whether the compiler supports template-qualified return types... yes
checking whether the compiler supports const_cast<>... yes
checking whether the compiler supports reinterpret_cast<>... yes
checking whether the compiler supports static_cast<>... yes
checking whether the compiler supports dynamic_cast<>... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler supports the explicit keyword... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Run-Time Type Identification... yes
checking whether the compiler supports ISO C++ standard library... yes
checking whether the compiler supports Standard Template Library... yes
checking whether the compiler has numeric_limits<T>... yes
checking whether the compiler has stringstream... yes
checking whether the compiler has ext/hash_set... no
checking whether the compiler has ext/hash_map... no
checking for /dev/urandom... yes
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... no
checking whether pthreads work with -Kthread... no
checking whether pthreads work with -kthread... no
checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... i686-pc-linux-gnu-gcc
checking if zlib is wanted... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... (cached) yes
checking zlib in /usr... ok
configure: creating ./config.status
config.status: creating Makefile
config.status: creating PACC/Makefile
config.status: creating PACC/Math/Makefile
config.status: creating PACC/SVG/Makefile
config.status: creating PACC/Socket/Makefile
config.status: creating PACC/Threading/Makefile
config.status: creating PACC/Util/Makefile
config.status: creating PACC/XML/Makefile
config.status: creating beagle/Makefile
config.status: creating beagle/include/Makefile
config.status: creating beagle/include/beagle/Makefile
config.status: creating beagle/src/Makefile
config.status: creating beagle/GA/Makefile
config.status: creating beagle/GA/include/Makefile
config.status: creating beagle/GA/include/beagle/Makefile
config.status: creating beagle/GA/include/beagle/GA/Makefile
config.status: creating beagle/GA/src/Makefile
config.status: creating beagle/GP/Makefile
config.status: creating beagle/GP/include/Makefile
config.status: creating beagle/GP/include/beagle/Makefile
config.status: creating beagle/GP/include/beagle/GP/Makefile
config.status: creating beagle/GP/src/Makefile
config.status: creating beagle/Coev/Makefile
config.status: creating beagle/Coev/include/Makefile
config.status: creating beagle/Coev/include/beagle/Makefile
config.status: creating beagle/Coev/include/beagle/Coev/Makefile
config.status: creating beagle/Coev/src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Common/Makefile
config.status: creating tests/Exception/Makefile
config.status: creating tests/GP/Makefile
config.status: creating tests/GP/FitnessTestGPIndividual/Makefile
config.status: creating tests/GP/ReadGPIndividual/Makefile
config.status: creating tests/GP/WriteRandomGPIndividual/Makefile
config.status: creating tests/LinGP/Makefile
config.status: creating tests/LinGP/include/Makefile
config.status: creating tests/LinGP/include/beagle/Makefile
config.status: creating tests/LinGP/include/beagle/LinGP/Makefile
config.status: creating tests/LinGP/src/Makefile
config.status: creating tests/Roulette/Makefile
config.status: creating tests/Thread/Makefile
config.status: creating tests/TransportTCPIPOp/Makefile
config.status: creating config/config-h
config.status: executing beagle/include/beagle/config.hpp commands
config.status: creating beagle/include/beagle/config.hpp - prefix BEAGLE for config/config-h defines
config.status: executing depfiles commands
make -j14 
Making all in PACC
make[1]: Entering directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC'
Making all in Util
make[2]: Entering directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC/Util'
if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC  -I/usr/include -DPACC_ZLIB  -O2 -pipe -pthread -MT Date.lo -MD -MP -MF ".deps/Date.Tpo" -c -o Date.lo Date.cpp; \
	then mv -f ".deps/Date.Tpo" ".deps/Date.Plo"; else rm -f ".deps/Date.Tpo"; exit 1; fi
if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC  -I/usr/include -DPACC_ZLIB  -O2 -pipe -pthread -MT Randomizer.lo -MD -MP -MF ".deps/Randomizer.Tpo" -c -o Randomizer.lo Randomizer.cpp; \
	then mv -f ".deps/Randomizer.Tpo" ".deps/Randomizer.Plo"; else rm -f ".deps/Randomizer.Tpo"; exit 1; fi
if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC  -I/usr/include -DPACC_ZLIB  -O2 -pipe -pthread -MT SignalHandler.lo -MD -MP -MF ".deps/SignalHandler.Tpo" -c -o SignalHandler.lo SignalHandler.cpp; \
	then mv -f ".deps/SignalHandler.Tpo" ".deps/SignalHandler.Plo"; else rm -f ".deps/SignalHandler.Tpo"; exit 1; fi
if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC  -I/usr/include -DPACC_ZLIB  -O2 -pipe -pthread -MT Timer.lo -MD -MP -MF ".deps/Timer.Tpo" -c -o Timer.lo Timer.cpp; \
	then mv -f ".deps/Timer.Tpo" ".deps/Timer.Plo"; else rm -f ".deps/Timer.Tpo"; exit 1; fi
if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC  -I/usr/include -DPACC_ZLIB  -O2 -pipe -pthread -MT Tokenizer.lo -MD -MP -MF ".deps/Tokenizer.Tpo" -c -o Tokenizer.lo Tokenizer.cpp; \
	then mv -f ".deps/Tokenizer.Tpo" ".deps/Tokenizer.Plo"; else rm -f ".deps/Tokenizer.Tpo"; exit 1; fi
mkdir .libs
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Timer.lo -MD -MP -MF .deps/Timer.Tpo -c Timer.cpp  -fPIC -DPIC -o .libs/Timer.o
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT SignalHandler.lo -MD -MP -MF .deps/SignalHandler.Tpo -c SignalHandler.cpp  -fPIC -DPIC -o .libs/SignalHandler.o
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Tokenizer.lo -MD -MP -MF .deps/Tokenizer.Tpo -c Tokenizer.cpp  -fPIC -DPIC -o .libs/Tokenizer.o
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Randomizer.lo -MD -MP -MF .deps/Randomizer.Tpo -c Randomizer.cpp  -fPIC -DPIC -o .libs/Randomizer.o
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Date.lo -MD -MP -MF .deps/Date.Tpo -c Date.cpp  -fPIC -DPIC -o .libs/Date.o
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Timer.lo -MD -MP -MF .deps/Timer.Tpo -c Timer.cpp -o Timer.o >/dev/null 2>&1
Tokenizer.cpp: In member function 'bool PACC::Tokenizer::getNextToken(std::string&)':
Tokenizer.cpp:63: error: 'exit' was not declared in this scope
Tokenizer.cpp: In member function 'int PACC::Tokenizer::peekNextChar()':
Tokenizer.cpp:128: error: 'exit' was not declared in this scope
Tokenizer.cpp: In member function 'void PACC::Tokenizer::putbackToken(const std::string&)':
Tokenizer.cpp:143: error: 'exit' was not declared in this scope
Tokenizer.cpp: In member function 'void PACC::Tokenizer::setDelimiters(const std::string&, const std::string&)':
Tokenizer.cpp:152: error: 'memset' was not declared in this scope
Tokenizer.cpp:157: error: 'exit' was not declared in this scope
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Date.lo -MD -MP -MF .deps/Date.Tpo -c Date.cpp -o Date.o >/dev/null 2>&1
make[2]: *** [Tokenizer.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT SignalHandler.lo -MD -MP -MF .deps/SignalHandler.Tpo -c SignalHandler.cpp -o SignalHandler.o >/dev/null 2>&1
 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Randomizer.lo -MD -MP -MF .deps/Randomizer.Tpo -c Randomizer.cpp -o Randomizer.o >/dev/null 2>&1
make[2]: Leaving directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC/Util'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC'
make: *** [all-recursive] Error 1
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-libs/beagle-3.0.1 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line  189:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake || die "Make failed.";
 [31;01m*[0m  The die message:
 [31;01m*[0m   Make failed.
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-libs/beagle-3.0.1:20081219-103425.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/beagle-3.0.1/temp/environment'.
 [31;01m*[0m