>>> Unpacking source... >>> Unpacking beagle-3.0.1.tar.gz to /var/tmp/portage/sci-libs/beagle-3.0.1/work >>> Source unpacked. >>> Compiling source in /var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1 ... * econf: updating beagle-3.0.1/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/zeromin/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/zeromin/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/maxfctes/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/maxfctes/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/maxfctfloat/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/maxfctfloat/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/maxfct/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/maxfct/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/tsp/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/tsp/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/onemax/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/onemax/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GA/knapsack/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GA/knapsack/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/Coev/coev_symbreg/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/Coev/coev_symbreg/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/Coev/ipd/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/Coev/ipd/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GP/parity/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GP/parity/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GP/spambase/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GP/spambase/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.1/examples/GP/symbreg/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.1/examples/GP/symbreg/config/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-optimization --build=i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gawk... (cached) gawk checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed checking dependency style of i686-pc-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for egrep... grep -E checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/i686-pc-linux-gnu-nm -B checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking for i686-pc-linux-gnu-g77... no checking for i686-pc-linux-gnu-f77... no checking for i686-pc-linux-gnu-xlf... no checking for i686-pc-linux-gnu-frt... no checking for i686-pc-linux-gnu-pgf77... no checking for i686-pc-linux-gnu-fort77... no checking for i686-pc-linux-gnu-fl32... no checking for i686-pc-linux-gnu-af77... no checking for i686-pc-linux-gnu-f90... no checking for i686-pc-linux-gnu-xlf90... no checking for i686-pc-linux-gnu-pgf90... no checking for i686-pc-linux-gnu-epcf90... no checking for i686-pc-linux-gnu-f95... no checking for i686-pc-linux-gnu-fort... no checking for i686-pc-linux-gnu-xlf95... no checking for i686-pc-linux-gnu-ifc... no checking for i686-pc-linux-gnu-efc... no checking for i686-pc-linux-gnu-pgf95... no checking for i686-pc-linux-gnu-lf95... no checking for i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether i686-pc-linux-gnu-gfortran accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/i686-pc-linux-gnu-nm -B output from i686-pc-linux-gnu-gcc object... ok checking for objdir... .libs checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip checking if i686-pc-linux-gnu-gcc static flag works... yes checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for i686-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if i686-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-gfortran supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for ANSI C header files... (cached) yes checking whether the compiler recognizes bool as a built-in type... yes checking for long long int... yes checking whether the compiler supports isfinite macro... no checking whether the compiler supports basic templates... yes checking whether the compiler recognizes typename... yes checking whether the compiler supports function matching with argument types which are template scope-qualified... yes checking whether the compiler supports default template parameters... yes checking whether the compiler supports template-qualified base class specifiers... no checking whether the compiler supports template-qualified return types... yes checking whether the compiler supports const_cast<>... yes checking whether the compiler supports reinterpret_cast<>... yes checking whether the compiler supports static_cast<>... yes checking whether the compiler supports dynamic_cast<>... yes checking whether the compiler supports exceptions... yes checking whether the compiler supports the explicit keyword... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports Run-Time Type Identification... yes checking whether the compiler supports ISO C++ standard library... yes checking whether the compiler supports Standard Template Library... yes checking whether the compiler has numeric_limits... yes checking whether the compiler has stringstream... yes checking whether the compiler has ext/hash_set... no checking whether the compiler has ext/hash_map... no checking for /dev/urandom... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... i686-pc-linux-gnu-gcc checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for inflateEnd in -lz... (cached) yes checking zlib in /usr... ok configure: creating ./config.status config.status: creating Makefile config.status: creating PACC/Makefile config.status: creating PACC/Math/Makefile config.status: creating PACC/SVG/Makefile config.status: creating PACC/Socket/Makefile config.status: creating PACC/Threading/Makefile config.status: creating PACC/Util/Makefile config.status: creating PACC/XML/Makefile config.status: creating beagle/Makefile config.status: creating beagle/include/Makefile config.status: creating beagle/include/beagle/Makefile config.status: creating beagle/src/Makefile config.status: creating beagle/GA/Makefile config.status: creating beagle/GA/include/Makefile config.status: creating beagle/GA/include/beagle/Makefile config.status: creating beagle/GA/include/beagle/GA/Makefile config.status: creating beagle/GA/src/Makefile config.status: creating beagle/GP/Makefile config.status: creating beagle/GP/include/Makefile config.status: creating beagle/GP/include/beagle/Makefile config.status: creating beagle/GP/include/beagle/GP/Makefile config.status: creating beagle/GP/src/Makefile config.status: creating beagle/Coev/Makefile config.status: creating beagle/Coev/include/Makefile config.status: creating beagle/Coev/include/beagle/Makefile config.status: creating beagle/Coev/include/beagle/Coev/Makefile config.status: creating beagle/Coev/src/Makefile config.status: creating tests/Makefile config.status: creating tests/Common/Makefile config.status: creating tests/Exception/Makefile config.status: creating tests/GP/Makefile config.status: creating tests/GP/FitnessTestGPIndividual/Makefile config.status: creating tests/GP/ReadGPIndividual/Makefile config.status: creating tests/GP/WriteRandomGPIndividual/Makefile config.status: creating tests/LinGP/Makefile config.status: creating tests/LinGP/include/Makefile config.status: creating tests/LinGP/include/beagle/Makefile config.status: creating tests/LinGP/include/beagle/LinGP/Makefile config.status: creating tests/LinGP/src/Makefile config.status: creating tests/Roulette/Makefile config.status: creating tests/Thread/Makefile config.status: creating tests/TransportTCPIPOp/Makefile config.status: creating config/config-h config.status: executing beagle/include/beagle/config.hpp commands config.status: creating beagle/include/beagle/config.hpp - prefix BEAGLE for config/config-h defines config.status: executing depfiles commands make -j14 Making all in PACC make[1]: Entering directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC' Making all in Util make[2]: Entering directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC/Util' if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Date.lo -MD -MP -MF ".deps/Date.Tpo" -c -o Date.lo Date.cpp; \ then mv -f ".deps/Date.Tpo" ".deps/Date.Plo"; else rm -f ".deps/Date.Tpo"; exit 1; fi if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Randomizer.lo -MD -MP -MF ".deps/Randomizer.Tpo" -c -o Randomizer.lo Randomizer.cpp; \ then mv -f ".deps/Randomizer.Tpo" ".deps/Randomizer.Plo"; else rm -f ".deps/Randomizer.Tpo"; exit 1; fi if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT SignalHandler.lo -MD -MP -MF ".deps/SignalHandler.Tpo" -c -o SignalHandler.lo SignalHandler.cpp; \ then mv -f ".deps/SignalHandler.Tpo" ".deps/SignalHandler.Plo"; else rm -f ".deps/SignalHandler.Tpo"; exit 1; fi if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Timer.lo -MD -MP -MF ".deps/Timer.Tpo" -c -o Timer.lo Timer.cpp; \ then mv -f ".deps/Timer.Tpo" ".deps/Timer.Plo"; else rm -f ".deps/Timer.Tpo"; exit 1; fi if /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Tokenizer.lo -MD -MP -MF ".deps/Tokenizer.Tpo" -c -o Tokenizer.lo Tokenizer.cpp; \ then mv -f ".deps/Tokenizer.Tpo" ".deps/Tokenizer.Plo"; else rm -f ".deps/Tokenizer.Tpo"; exit 1; fi mkdir .libs i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Timer.lo -MD -MP -MF .deps/Timer.Tpo -c Timer.cpp -fPIC -DPIC -o .libs/Timer.o i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT SignalHandler.lo -MD -MP -MF .deps/SignalHandler.Tpo -c SignalHandler.cpp -fPIC -DPIC -o .libs/SignalHandler.o i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Tokenizer.lo -MD -MP -MF .deps/Tokenizer.Tpo -c Tokenizer.cpp -fPIC -DPIC -o .libs/Tokenizer.o i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Randomizer.lo -MD -MP -MF .deps/Randomizer.Tpo -c Randomizer.cpp -fPIC -DPIC -o .libs/Randomizer.o i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Date.lo -MD -MP -MF .deps/Date.Tpo -c Date.cpp -fPIC -DPIC -o .libs/Date.o i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Timer.lo -MD -MP -MF .deps/Timer.Tpo -c Timer.cpp -o Timer.o >/dev/null 2>&1 Tokenizer.cpp: In member function 'bool PACC::Tokenizer::getNextToken(std::string&)': Tokenizer.cpp:63: error: 'exit' was not declared in this scope Tokenizer.cpp: In member function 'int PACC::Tokenizer::peekNextChar()': Tokenizer.cpp:128: error: 'exit' was not declared in this scope Tokenizer.cpp: In member function 'void PACC::Tokenizer::putbackToken(const std::string&)': Tokenizer.cpp:143: error: 'exit' was not declared in this scope Tokenizer.cpp: In member function 'void PACC::Tokenizer::setDelimiters(const std::string&, const std::string&)': Tokenizer.cpp:152: error: 'memset' was not declared in this scope Tokenizer.cpp:157: error: 'exit' was not declared in this scope i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Date.lo -MD -MP -MF .deps/Date.Tpo -c Date.cpp -o Date.o >/dev/null 2>&1 make[2]: *** [Tokenizer.lo] Error 1 make[2]: *** Waiting for unfinished jobs.... i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT SignalHandler.lo -MD -MP -MF .deps/SignalHandler.Tpo -c SignalHandler.cpp -o SignalHandler.o >/dev/null 2>&1 i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -O2 -pipe -pthread -MT Randomizer.lo -MD -MP -MF .deps/Randomizer.Tpo -c Randomizer.cpp -o Randomizer.o >/dev/null 2>&1 make[2]: Leaving directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC/Util' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/sci-libs/beagle-3.0.1/work/beagle-3.0.1/PACC' make: *** [all-recursive] Error 1 * * ERROR: sci-libs/beagle-3.0.1 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 189: Called die * The specific snippet of code: * emake || die "Make failed."; * The die message: * Make failed. * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/log/portage/sci-libs/beagle-3.0.1:20081219-103425.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/beagle-3.0.1/temp/environment'. *