>>> Unpacking source... >>> Unpacking maid_unix_12nov01.tar.gz to /var/tmp/portage/sci-chemistry/maid-20011112/work >>> Unpacking maid-fix-compilation.patch.bz2 to /var/tmp/portage/sci-chemistry/maid-20011112/work * Applying maid-fix-compilation.patch.bz2 ...  [ ok ] * Applying fix-warnings.patch ...  [ ok ] * Applying maid-gcc4.3.patch ...  [ ok ] >>> Source unpacked. >>> Compiling source in /var/tmp/portage/sci-chemistry/maid-20011112/work/glmaid_dist ... make -j14 i686-pc-linux-gnu-g++ -c -O2 -pipe extend2.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe checkfit.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe refine.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe extendfit.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe mainbatch.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe initialize.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe runtordynnew.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe editbones.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe peptide.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe bone.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe tordyn.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe math.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe trace.c++ i686-pc-linux-gnu-g++ -c -O2 -pipe rankside.c++ mainbatch.c++: In function 'void readmaidfilebatch(maiddatafile&, griddata*, bonedata*)': mainbatch.c++:81: error: 'strcmp' was not declared in this scope mainbatch.c++:101: error: 'strcpy' was not declared in this scope mainbatch.c++:102: error: 'strcat' was not declared in this scope mainbatch.c++: In function 'int main(int, char**)': mainbatch.c++:123: error: 'strcpy' was not declared in this scope mainbatch.c++:138: error: 'strcpy' was not declared in this scope mainbatch.c++:146: error: 'strcpy' was not declared in this scope mainbatch.c++:151: error: 'strcasecmp' was not declared in this scope mainbatch.c++:157: error: 'strcpy' was not declared in this scope mainbatch.c++:177: error: 'strcasecmp' was not declared in this scope mainbatch.c++:209: warning: deprecated conversion from string constant to 'char*' mainbatch.c++:232: warning: deprecated conversion from string constant to 'char*' make: *** [mainbatch.o] Error 1 make: *** Waiting for unfinished jobs.... checkfit.c++: In function 'void checkextendedfit(int, geometry&, griddata&, int*, int*)': checkfit.c++:619: warning: deprecated conversion from string constant to 'char*' checkfit.c++:630: warning: deprecated conversion from string constant to 'char*' checkfit.c++:639: warning: deprecated conversion from string constant to 'char*' checkfit.c++:657: warning: deprecated conversion from string constant to 'char*' checkfit.c++:700: warning: deprecated conversion from string constant to 'char*' checkfit.c++:718: warning: deprecated conversion from string constant to 'char*' checkfit.c++:745: warning: deprecated conversion from string constant to 'char*' checkfit.c++:769: warning: deprecated conversion from string constant to 'char*' checkfit.c++:782: warning: deprecated conversion from string constant to 'char*' checkfit.c++:793: warning: deprecated conversion from string constant to 'char*' checkfit.c++:813: warning: deprecated conversion from string constant to 'char*' checkfit.c++: In function 'void bonedistgeo(griddata&, geometry&, bonedata&, int*)': checkfit.c++:1536: warning: deprecated conversion from string constant to 'char*' extendfit.c++: In function 'void maxfitdist(geometry&, pepfit&, int, int*)': extendfit.c++:1150: warning: deprecated conversion from string constant to 'char*' checkfit.c++: In function 'void bonedistgeo2(griddata&, geometry&, bonedata&, int*)': checkfit.c++:1703: warning: deprecated conversion from string constant to 'char*' checkfit.c++: In function 'void bonedist(griddata&, geometry&, bonedata&)': checkfit.c++:1958: warning: deprecated conversion from string constant to 'char*' extendfit.c++: In function 'void extendandfuse(pepset&, griddata&, geometry&, int (*)[40], int*, int)': extendfit.c++:3967: warning: deprecated conversion from string constant to 'char*' peptide.c++: In function 'float zbrent(float (*)(float, float (*)[3], float, float*, float*, float*, float*, float*, float*, float*, float, float, float, float, float, float, float, float, float, float, float), float, float, float (*)[3], float, float*, float*, float*, float*, float*, float*, float*, float, float, float, float, float, float, float, float, float, float, float, float)': peptide.c++:1579: warning: deprecated conversion from string constant to 'char*' peptide.c++:1632: warning: deprecated conversion from string constant to 'char*' peptide.c++: In function 'float zbrentn(float (*)(float, float*, int*, int, float (*)[3], float (*)[3], float, float*, float, float, float, float, float, float, float, float, float, float, float), float, float, float*, int*, int, float (*)[3], float (*)[3], float, float*, float, float, float, float, float, float, float, float, float, float, float, float)': peptide.c++:1757: warning: deprecated conversion from string constant to 'char*' peptide.c++:1810: warning: deprecated conversion from string constant to 'char*' In file included from trace.c++:51: tracerecipes.inc: In function 'float* fvector(long int, long int)': tracerecipes.inc:51: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'int* ivector(long int, long int)': tracerecipes.inc:61: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'unsigned char* cvector(long int, long int)': tracerecipes.inc:71: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'long unsigned int* lvector(long int, long int)': tracerecipes.inc:81: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'double* dvector(long int, long int)': tracerecipes.inc:91: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'float** matrix(long int, long int, long int, long int)': tracerecipes.inc:103: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc:109: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'double** dmatrix(long int, long int, long int, long int)': tracerecipes.inc:127: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc:133: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'int** imatrix(long int, long int, long int, long int)': tracerecipes.inc:151: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc:158: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'float** submatrix(float**, long int, long int, long int, long int, long int, long int)': tracerecipes.inc:177: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'float** convert_matrix(float*, long int, long int, long int, long int)': tracerecipes.inc:199: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'float*** f3tensor(long int, long int, long int, long int, long int, long int)': tracerecipes.inc:218: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc:224: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc:230: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'float brent(geometry&, griddata&, int, pepfit, pepfit, float*, float*, float (*)[20][3], float (*)[20][3], int, float*, float*, float*, float, float, float, float (*)(float, geometry&, griddata&, int, pepfit, pepfit, float*, float*, float (*)[20][3], float (*)[20][3], int, float*, float*, float*), float, float*)': tracerecipes.inc:380: warning: deprecated conversion from string constant to 'char*' tracerecipes.inc: In function 'void powell(geometry&, griddata&, int, pepfit, pepfit, float*, float*, float (*)[20][3], float (*)[20][3], int, float*, float*, float*, float*, float**, int, float, int*, float*, float (*)(float*, geometry&, griddata&, int, pepfit, pepfit, float*, float*, float (*)[20][3], float (*)[20][3], int, float*, float*, float*))': tracerecipes.inc:562: warning: deprecated conversion from string constant to 'char*' trace.c++: In function 'void initialfit(griddata&, geometry&, point&, int, int*, pepfit*, int*, int***, bonedata&)': trace.c++:6116: warning: deprecated conversion from string constant to 'char*' trace.c++:6267: warning: deprecated conversion from string constant to 'char*' * * ERROR: sci-chemistry/maid-20011112 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 2148: Called _eapi0_src_compile * ebuild.sh, line 595: Called _eapi2_src_compile * ebuild.sh, line 629: Called die * The specific snippet of code: * emake || die "emake failed" * The die message: * emake failed * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/log/portage/sci-chemistry/maid-20011112:20081219-061304.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/maid-20011112/temp/environment'. *