# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/mustang-3.ebuild,v 1.3 2006/12/11 06:21:00 dberkholz Exp $

inherit toolchain-funcs eutils

MY_PN="MUSTANG"
SRC_P="${PN}_v.${PV}"
MY_P="${MY_PN}_v.${PV}"
DESCRIPTION="MUltiple STructural AligNment AlGorithm."
HOMEPAGE="http://www.cs.mu.oz.au/~arun/mustang/"
SRC_URI="${HOMEPAGE}${SRC_P}.tgz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="x86 amd64"
IUSE=""
RDEPEND=""
DEPEND="${RDEPEND}"
S="${WORKDIR}/${MY_P}"

src_unpack() {
    unpack ${A}
    epatch ${FILESDIR}/${P}-gcc43.patch
}


src_compile() {
	emake \
		CPP=$(tc-getCXX) \
		CPPFLAGS="${CXXFLAGS}" \
		LDFLAGS="${LDFLAGS}" \
		|| die "emake failed"
}

src_test() {
	./bin/MUSTANG_v.${PV} -f ./data/test/test_zf-CCHH
}

src_install() {
	newbin bin/MUSTANG_v.3 mustang
	mv mustang mustang.1
	doman mustang.1
}

pkg_postinst() {
	elog "If you use this program for an academic paper, please cite:"
	elog "Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, and Arthur M. Lesk"
	elog "Proteins: Structure, Function, and Bioinformatics. 64(3):559-574, Aug. 2006"
}