sci-biology/biopython-1.49.ebuild

biopython-1.49.ebuild (text/plain), 1.15 KB, created by [e-mail] on 2008-11-25 17:36:01 UTC

# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

NEED_PYTHON=2.3
inherit distutils eutils

DESCRIPTION="Biopython - Python modules for computational molecular biology"
LICENSE="as-is"
HOMEPAGE="http://www.biopython.org"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"

SLOT="0"
IUSE="mysql postgres"
KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86"

FEATURES="test"

DEPEND="dev-python/numpy
	>=dev-python/reportlab-2.0
	sys-devel/flex"

RDEPEND="${DEPEND}
	mysql? ( dev-python/mysql-python )
	postgres? ( dev-python/psycopg )"

src_unpack() {
	unpack ${A}
	cd "${S}"
	epatch "${FILESDIR}/${P}-flex.patch"
}

src_compile() {
	distutils_src_compile
}

src_install() {
	DOCS="CONTRIB DEPRECATED NEWS README"
	distutils_src_install

	dodir "/usr/share/doc/${PF}"
	cp -r Doc/* "${D}/usr/share/doc/${PF}/" || \
			die "Failed to install documentation."
	dodir "/usr/share/${PN}"
	cp -r --preserve=mode Scripts Tests "${D}/usr/share/${PN}/" || \
			die "Failed to install shared files."
}

src_test() {
	cd "${S}/Tests"
	PYTHONPATH="${PYTHONPATH}:${S}" \
			python run_tests.py --no-gui || die "Tests failed."
}