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Gentoo's Bugzilla – Attachment 171278 Details for
Bug 246255
sci-chemistry/pdb-extract-1.700 - ./src/ndb_htmllib.C:2325: error: ???NDB_MSG_ERR??? was not declared in this scope
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/tmp/emerge.info
emerge.info (text/plain), 11.33 KB, created by
Justin Lecher (RETIRED)
on 2008-11-10 08:43:09 UTC
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Description:
/tmp/emerge.info
Filename:
MIME Type:
Creator:
Justin Lecher (RETIRED)
Created:
2008-11-10 08:43:09 UTC
Size:
11.33 KB
patch
obsolete
>Portage 2.2_rc13 (default/linux/x86/2008.0, gcc-4.3.2, glibc-2.6.1-r0, 2.6.25-gentoo-r8 i686) >================================================================= >System uname: Linux-2.6.25-gentoo-r8-i686-Intel-R-_Pentium-R-_D_CPU_2.80GHz-with-glibc2.0 >Timestamp of tree: Mon, 10 Nov 2008 07:32:01 +0000 >ccache version 2.4 [enabled] >app-shells/bash: 3.2_p33 >dev-java/java-config: 1.3.7, 2.1.6 >dev-lang/python: 2.5.2-r8 >dev-util/ccache: 2.4-r7 >sys-apps/baselayout: 2.0.0 >sys-apps/openrc: 0.3.0-r1 >sys-apps/sandbox: 1.2.18.1-r2 >sys-devel/autoconf: 2.13, 2.61-r2 >sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1 >sys-devel/binutils: 2.18-r3 >sys-devel/gcc-config: 1.4.0-r4 >sys-devel/libtool: 1.5.26 >virtual/os-headers: 2.6.25-r4 >ACCEPT_KEYWORDS="x86" >ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" >ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" >ANT_HOME="/usr/share/ant-core" >ARCH="x86" >AUTOCLEAN="yes" >BINSORT_SCR="/tmp/justin" >BINTYPE="linux9" >CBIN="/usr/bin" >CBUILD="i686-pc-linux-gnu" >CCACHE_DIR="/home/ccache" >CCACHE_SIZE="3G" >CCP4="/usr" >CCP4I_HELP="/usr/lib/ccp4/ccp4i/help" >CCP4I_TCLTK="/usr/bin" >CCP4I_TOP="/usr/lib/ccp4/ccp4i" >CCP4_BIN="/usr/bin" >CCP4_BROWSER="mozilla" >CCP4_HELPDIR="/usr/help/" >CCP4_LIB="/usr/lib" >CCP4_MASTER="/usr" >CCP4_OPEN="UNKNOWN" >CCP4_SCR="/tmp/justin" >CDOC="/usr/doc" >CETC="/usr/etc" >CEXAM="/usr/examples" >CFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" >CHOST="i686-pc-linux-gnu" >CHTML="/usr/html" >CINCL="/usr/share/ccp4/include" >CLASSPATH="/usr/bin:." >CLEAN_DELAY="5" >CLIB="/usr/lib" >CLIBD="/usr/share/ccp4/data" >CLIBD_MON="/share/ccp4/data/monomers/" >CLIBS="/usr/lib/src" >CNS_CONFDB="/usr/share/cns/libraries/confdb" >CNS_DATA="/usr/share/cns" >CNS_DOC="/usr/share/doc/cns-1.2.1" >CNS_HELPLIB="/usr/share/cns/helplib" >CNS_LIB="/usr/share/cns/libraries" >CNS_MODULE="/usr/share/cns/modules" >CNS_NMRLIB="/usr/share/cns/libraries/nmr" >CNS_NMRMODULE="/usr/share/cns/modules/nmr" >CNS_ROOT="/usr" >CNS_SOLVE="/usr" >CNS_TOPPAR="/usr/share/cns/libraries/toppar" >CNS_XRAYLIB="/usr/share/cns/libraries/xray" >CNS_XTALLIB="/usr/share/cns/libraries/xtal" >CNS_XTALMODULE="/usr/share/cns/modules/xtal" >COLLISION_IGNORE="/lib/modules" >COLORFGBG="7;default;0" >COLORTERM="rxvt-xpm" >CONFIG_PROTECT="/etc /var/lib/hsqldb" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" >COOT_REFMAC_LIB_DIR="/usr/share/coot/lib" >CPROG="/usr/src" >CRANK="/usr/ccp4i/crank" >CVS_RSH="ssh" >CXXFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" >DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-zxsnrp87Sj,guid=31f36fe4893008aa64274b9c4910448d" >DESKTOP_SESSION="gnome" >DISPLAY=":0.0" >DISTDIR="/usr/portage/distfiles" >DYLD_LIBRARY_PATH="/usr/lib:/usr/lib" >DYNAMO_DIR="${NMRBASE}/dynamo" >DYNAMO_KEY="2002084" >DYNAMO_PARAMS="${DYNAMO_DIR}/params" >ECHANGELOG_USER="justin Lecher <justin@j-schmitz.net>" >EDITOR="/bin/nano" >ELIBC="glibc" >EMERGE_DEFAULT_OPTS="-t --verbose --jobs=3 --load-average=3 --keep-going" >EMERGE_WARNING_DELAY="10" >F77="gfortran" >FCFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" >FEATURES="ccache distlocks notitles parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch" >FETCHCOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" >FFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" >GCC_SPECS="" >GDK_USE_XFT="1" >GDMSESSION="gnome" >GDM_LANG="en_GB.UTF-8" >GDM_XSERVER_LOCATION="local" >GENERATION="2" >GENTOO_MIRRORS="http://gentoo.j-schmitz.net/mirror/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/ http://mirror.switch.ch/ftp/mirror/gentoo/" >GKLIB="/opt/usf-lib/" >GNOME_DESKTOP_SESSION_ID="Default" >GNOME_KEYRING_SOCKET="/tmp/keyring-MzuVWW/socket" >GPG_AGENT_INFO="/tmp/gpg-aiOKpO/S.gpg-agent:7978:1" >GTK_RC_FILES="/etc/gtk/gtkrc:/home/justin/.gtkrc-1.2-gnome2" >GUILE_LOAD_PATH="/usr/share/guile/1.8" >HELPDIR="/usr/help/" >HISTCONTROL="ignoredups" >HISTFILESIZE="1000" >HISTIGNORE="fg:bg" >HISTSIZE="1000" >HOME="/home/justin" >INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/info:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.2/info" >INPUT_DEVICES="keyboard mouse" >INTEL_BATCH="1" >JAVAC="/home/justin/.gentoo/java-config-2/current-user-vm/bin/javac" >JAVA_HOME="/home/justin/.gentoo/java-config-2/current-user-vm" >JDK_HOME="/home/justin/.gentoo/java-config-2/current-user-vm" >KERNEL="linux" >LANG="en_GB.UTF-8" >LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" >LC_CTYPE="en_GB.UTF-8" >LDFLAGS="-Wl,-O1,--hash-style=gnu,--sort-common" >LD_LIBRARY_PATH="/usr/lib:/usr/lib" >LESS="-R -M --shift 5" >LESSOPEN="|lesspipe.sh %s" >LINGUAS="de en_GB en_US" >LOGNAME="justin" >MAKEOPTS="-j3 -l3" >MANPATH="/home/justin/.gentoo/java-config-2/current-user-vm/man:/usr/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/man:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.2/man:/opt/intel/cc/10.1.018/man:/opt/intel/fc/10.0.026/man:/opt/sun-jdk-1.4.2.18/man:/etc/java-config/system-vm/man/:${NMRBASE}/man" >MCTYPE="unix" >MMCIFDIC="/usr/lib/cif_mmdic.lib" >MOLREPLIB="/share/ccp4/data/monomers/" >MOSHELPFILE="mosflm" >MP_SET_NUMTHREADS="1" >NMRBASE="/opt/nmrpipe" >NMRTXT="${NMRBASE}/nmrtxt" >NOCOLOR="true" >OMP_NUM_THREADS="2" >OPENGL_PROFILE="xorg-x11" >PAGER="/usr/bin/less" >PATH="/usr/lib/ccp4/ccp4i/bin:/usr/etc:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.3.2:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.0.026/bin:/opt/cara/:/opt/sun-jdk-1.4.2.18/bin:/opt/sun-jdk-1.4.2.18/jre/bin:/opt/sun-jdk-1.4.2.18/jre/javaws:/opt/usf-dejavu-bin/:/opt/usf-rave-bin/:/opt/usf-voidoo-bin/:/opt/usf-xutil-bin/:${PATH}:${DYNAMO_DIR}/tcl:/usr/games/bin:/data/scripts" >PDBH_BASE="${NMRBASE}/pdb" >PDBH_DIR="${PDBH_BASE}/pdbH" >PDBH_LIST="${PDBH_BASE}/pdbH.list" >PDBH_TAB="${PDBH_BASE}/resolution.tab" >PKGDIR="/usr/portage/packages" >PLOT_COMMAND="lp -s -dmicrolaser" >PORTAGE_ARCHLIST="ppc s390 amd64 x86 ppc64 x86-fbsd m68k arm sparc sh mips ia64 alpha hppa sparc-fbsd" >PORTAGE_BINHOST_CHUNKSIZE="3000" >PORTAGE_BIN_PATH="/usr/lib/portage/bin" >PORTAGE_COMPRESS="lzma" >PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" >PORTAGE_COMPRESS_FLAGS="-z -9 -f -S .lzma -v" >PORTAGE_CONFIGROOT="/" >PORTAGE_DEBUG="0" >PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" >PORTAGE_ECLASS_WARNING_ENABLE="0" >PORTAGE_ELOG_CLASSES="info warn error log * qa" >PORTAGE_ELOG_MAILFROM="portage@localhost" >PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" >PORTAGE_ELOG_MAILURI="root" >PORTAGE_ELOG_SYSTEM="save echo" >PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" >PORTAGE_FETCH_RESUME_MIN_SIZE="350K" >PORTAGE_GID="250" >PORTAGE_INST_GID="0" >PORTAGE_INST_UID="0" >PORTAGE_PYM_PATH="/usr/lib/portage/pym" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" >PORTAGE_RSYNC_RETRIES="3" >PORTAGE_TMPDIR="/var/tmp" >PORTAGE_VERBOSE="1" >PORTAGE_WORKDIR_MODE="0700" >PORTDIR="/usr/portage" >PORTDIR_OVERLAY="/usr/portage/local/layman/dberkholz /usr/portage/local/layman/science /usr/portage/local/private-overlay-dev/ebuilds /usr/portage/local/molmod/trunk /usr/portage/local/molmod/branches" >PRINT_COMMAND="lp -s -denscript" >PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" >PUBLIC_FONT84="/usr/lib/font84.dat" >PWD="/home/justin" >PYMOL_DATA="/usr/share/pymol/data" >PYMOL_PATH="/usr/lib/python2.5/site-packages/pymol" >PYMOL_SCRIPTS="/usr/share/pymol/scripts" >RASMOLPATH="/usr/x-windows/RasMol/src" >RCSBROOT="/usr/lib/rcsb" >RESUMECOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" >ROOT="/" >ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.3.2:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.0.026/bin:/opt/sun-jdk-1.4.2.18/bin:/opt/sun-jdk-1.4.2.18/jre/bin:/opt/sun-jdk-1.4.2.18/jre/javaws:/data/scripts" >RPMDIR="/usr/portage/rpm" >SESSION_MANAGER="local/kancheli:/tmp/.ICE-unix/7872" >SGML_CATALOG_FILES="/etc/sgml/openjade-1.3.2.cat:/etc/sgml/xml-docbook-4.4.cat:/etc/sgml/xml-docbook-4.1.2.cat:/etc/sgml/sgml-docbook.cat:/etc/sgml/sgml-lite.cat:/etc/sgml/sgml-ent.cat:/etc/sgml/dsssl-docbook-stylesheets.cat:/etc/sgml/sgml-docbook-3.1.cat" >SHELL="/bin/bash" >SHLVL="1" >SSH_AGENT_PID="7952" >SSH_ASKPASS="/usr/bin/gtk2-ssh-askpass" >SSH_AUTH_SOCK="/tmp/ssh-AYOphT7951/agent.7951" >SURF_DIR="${DYNAMO_DIR}/surface" >SYNC="rsync://rsync.j-schmitz.net/gentoo-portage" >TERM="rxvt-unicode" >TRAP_FPE="OVERFL=ABORT; DIVZERO=ABORT; INVALID=ABORT" >USE="7zip X acpi additions alsa bash-completion berkdb branding bzip2 c++ cblas ccache cli command-args cracklib crypt cups cupsddk custom-optimization cxx dri dts fbcondecor fortran gdbm gif glibc-omitfp gnome gpm graphics gtk hddtemp iconv isdnlog java javascript jpeg kdeenablefinal lapack lcms libnotify lm_sensors mailtrain md5sum midi mmx mp3 mpi mudflap multiuser nagios-dns nagios-ntp nagios-ping nagios-ssh nano-syntax ncurses nis nls nptl nptlonly nsplugin objc objc++ opengl openmp openntpd oss pam pcre pdf perl png pppd pymol python qt-static qt3support readline reflection replytolist restrict-javascript rrdcgi rrdtool science sensord session smp spl sqlite sqlite3 sse sse2 ssl swat symlink sysfs tcpd threads tiff truetype type1 unicode x86 xcomposite xorg xulrunner zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en_GB en_US" USERLAND="GNU" VIDEO_CARDS="intel" >USER="justin" >USERLAND="GNU" >USERNAME="justin" >USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS USERLAND VIDEO_CARDS" >USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" >USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" >VIDEO_CARDS="intel" >VMHANDLE="sun-jdk-1.4" >WINDOWID="44042661" >WINDOWPATH="7" >WINEPREFIX="/home/justin/.wine" >XAUTHORITY="/home/justin/.Xauthority" >XCURSORS_THEME="Jimmac" >XDG_DATA_DIRS="/usr/local/share/:/usr/share/:/usr/share/gdm/" >XSESSION="Gnome" >XUSERFILESEARCHPATH="/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults" >_="/usr/bin/emerge" >_POSIX2_VERSION="199209" >
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bug 246255
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