Portage 2.2_rc13 (default/linux/x86/2008.0, gcc-4.3.2, glibc-2.6.1-r0, 2.6.25-gentoo-r8 i686)
=================================================================
System uname: Linux-2.6.25-gentoo-r8-i686-Intel-R-_Pentium-R-_D_CPU_2.80GHz-with-glibc2.0
Timestamp of tree: Mon, 10 Nov 2008 07:32:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     3.2_p33
dev-java/java-config: 1.3.7, 2.1.6
dev-lang/python:     2.5.2-r8
dev-util/ccache:     2.4-r7
sys-apps/baselayout: 2.0.0
sys-apps/openrc:     0.3.0-r1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.61-r2
sys-devel/automake:  1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.25-r4
ACCEPT_KEYWORDS="x86"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol"
ANT_HOME="/usr/share/ant-core"
ARCH="x86"
AUTOCLEAN="yes"
BINSORT_SCR="/tmp/justin"
BINTYPE="linux9"
CBIN="/usr/bin"
CBUILD="i686-pc-linux-gnu"
CCACHE_DIR="/home/ccache"
CCACHE_SIZE="3G"
CCP4="/usr"
CCP4I_HELP="/usr/lib/ccp4/ccp4i/help"
CCP4I_TCLTK="/usr/bin"
CCP4I_TOP="/usr/lib/ccp4/ccp4i"
CCP4_BIN="/usr/bin"
CCP4_BROWSER="mozilla"
CCP4_HELPDIR="/usr/help/"
CCP4_LIB="/usr/lib"
CCP4_MASTER="/usr"
CCP4_OPEN="UNKNOWN"
CCP4_SCR="/tmp/justin"
CDOC="/usr/doc"
CETC="/usr/etc"
CEXAM="/usr/examples"
CFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CHTML="/usr/html"
CINCL="/usr/share/ccp4/include"
CLASSPATH="/usr/bin:."
CLEAN_DELAY="5"
CLIB="/usr/lib"
CLIBD="/usr/share/ccp4/data"
CLIBD_MON="/share/ccp4/data/monomers/"
CLIBS="/usr/lib/src"
CNS_CONFDB="/usr/share/cns/libraries/confdb"
CNS_DATA="/usr/share/cns"
CNS_DOC="/usr/share/doc/cns-1.2.1"
CNS_HELPLIB="/usr/share/cns/helplib"
CNS_LIB="/usr/share/cns/libraries"
CNS_MODULE="/usr/share/cns/modules"
CNS_NMRLIB="/usr/share/cns/libraries/nmr"
CNS_NMRMODULE="/usr/share/cns/modules/nmr"
CNS_ROOT="/usr"
CNS_SOLVE="/usr"
CNS_TOPPAR="/usr/share/cns/libraries/toppar"
CNS_XRAYLIB="/usr/share/cns/libraries/xray"
CNS_XTALLIB="/usr/share/cns/libraries/xtal"
CNS_XTALMODULE="/usr/share/cns/modules/xtal"
COLLISION_IGNORE="/lib/modules"
COLORFGBG="7;default;0"
COLORTERM="rxvt-xpm"
CONFIG_PROTECT="/etc /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d"
COOT_REFMAC_LIB_DIR="/usr/share/coot/lib"
CPROG="/usr/src"
CRANK="/usr/ccp4i/crank"
CVS_RSH="ssh"
CXXFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer"
DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-zxsnrp87Sj,guid=31f36fe4893008aa64274b9c4910448d"
DESKTOP_SESSION="gnome"
DISPLAY=":0.0"
DISTDIR="/usr/portage/distfiles"
DYLD_LIBRARY_PATH="/usr/lib:/usr/lib"
DYNAMO_DIR="${NMRBASE}/dynamo"
DYNAMO_KEY="2002084"
DYNAMO_PARAMS="${DYNAMO_DIR}/params"
ECHANGELOG_USER="justin Lecher <justin@j-schmitz.net>"
EDITOR="/bin/nano"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="-t --verbose --jobs=3 --load-average=3 --keep-going"
EMERGE_WARNING_DELAY="10"
F77="gfortran"
FCFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer"
FEATURES="ccache distlocks notitles parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch"
FETCHCOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}"
FFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer"
GCC_SPECS=""
GDK_USE_XFT="1"
GDMSESSION="gnome"
GDM_LANG="en_GB.UTF-8"
GDM_XSERVER_LOCATION="local"
GENERATION="2"
GENTOO_MIRRORS="http://gentoo.j-schmitz.net/mirror/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/ http://mirror.switch.ch/ftp/mirror/gentoo/"
GKLIB="/opt/usf-lib/"
GNOME_DESKTOP_SESSION_ID="Default"
GNOME_KEYRING_SOCKET="/tmp/keyring-MzuVWW/socket"
GPG_AGENT_INFO="/tmp/gpg-aiOKpO/S.gpg-agent:7978:1"
GTK_RC_FILES="/etc/gtk/gtkrc:/home/justin/.gtkrc-1.2-gnome2"
GUILE_LOAD_PATH="/usr/share/guile/1.8"
HELPDIR="/usr/help/"
HISTCONTROL="ignoredups"
HISTFILESIZE="1000"
HISTIGNORE="fg:bg"
HISTSIZE="1000"
HOME="/home/justin"
INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/info:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.2/info"
INPUT_DEVICES="keyboard mouse"
INTEL_BATCH="1"
JAVAC="/home/justin/.gentoo/java-config-2/current-user-vm/bin/javac"
JAVA_HOME="/home/justin/.gentoo/java-config-2/current-user-vm"
JDK_HOME="/home/justin/.gentoo/java-config-2/current-user-vm"
KERNEL="linux"
LANG="en_GB.UTF-8"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LC_CTYPE="en_GB.UTF-8"
LDFLAGS="-Wl,-O1,--hash-style=gnu,--sort-common"
LD_LIBRARY_PATH="/usr/lib:/usr/lib"
LESS="-R -M --shift 5"
LESSOPEN="|lesspipe.sh %s"
LINGUAS="de en_GB en_US"
LOGNAME="justin"
MAKEOPTS="-j3 -l3"
MANPATH="/home/justin/.gentoo/java-config-2/current-user-vm/man:/usr/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/man:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.2/man:/opt/intel/cc/10.1.018/man:/opt/intel/fc/10.0.026/man:/opt/sun-jdk-1.4.2.18/man:/etc/java-config/system-vm/man/:${NMRBASE}/man"
MCTYPE="unix"
MMCIFDIC="/usr/lib/cif_mmdic.lib"
MOLREPLIB="/share/ccp4/data/monomers/"
MOSHELPFILE="mosflm"
MP_SET_NUMTHREADS="1"
NMRBASE="/opt/nmrpipe"
NMRTXT="${NMRBASE}/nmrtxt"
NOCOLOR="true"
OMP_NUM_THREADS="2"
OPENGL_PROFILE="xorg-x11"
PAGER="/usr/bin/less"
PATH="/usr/lib/ccp4/ccp4i/bin:/usr/etc:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.3.2:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.0.026/bin:/opt/cara/:/opt/sun-jdk-1.4.2.18/bin:/opt/sun-jdk-1.4.2.18/jre/bin:/opt/sun-jdk-1.4.2.18/jre/javaws:/opt/usf-dejavu-bin/:/opt/usf-rave-bin/:/opt/usf-voidoo-bin/:/opt/usf-xutil-bin/:${PATH}:${DYNAMO_DIR}/tcl:/usr/games/bin:/data/scripts"
PDBH_BASE="${NMRBASE}/pdb"
PDBH_DIR="${PDBH_BASE}/pdbH"
PDBH_LIST="${PDBH_BASE}/pdbH.list"
PDBH_TAB="${PDBH_BASE}/resolution.tab"
PKGDIR="/usr/portage/packages"
PLOT_COMMAND="lp -s -dmicrolaser"
PORTAGE_ARCHLIST="ppc s390 amd64 x86 ppc64 x86-fbsd m68k arm sparc sh mips ia64 alpha hppa sparc-fbsd"
PORTAGE_BINHOST_CHUNKSIZE="3000"
PORTAGE_BIN_PATH="/usr/lib/portage/bin"
PORTAGE_COMPRESS="lzma"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_COMPRESS_FLAGS="-z -9 -f -S .lzma -v"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ECLASS_WARNING_ENABLE="0"
PORTAGE_ELOG_CLASSES="info warn error log * qa"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="root"
PORTAGE_ELOG_SYSTEM="save echo"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_PYM_PATH="/usr/lib/portage/pym"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_RSYNC_RETRIES="3"
PORTAGE_TMPDIR="/var/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/dberkholz /usr/portage/local/layman/science /usr/portage/local/private-overlay-dev/ebuilds /usr/portage/local/molmod/trunk /usr/portage/local/molmod/branches"
PRINT_COMMAND="lp -s -denscript"
PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND"
PUBLIC_FONT84="/usr/lib/font84.dat"
PWD="/home/justin"
PYMOL_DATA="/usr/share/pymol/data"
PYMOL_PATH="/usr/lib/python2.5/site-packages/pymol"
PYMOL_SCRIPTS="/usr/share/pymol/scripts"
RASMOLPATH="/usr/x-windows/RasMol/src"
RCSBROOT="/usr/lib/rcsb"
RESUMECOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}"
ROOT="/"
ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.3.2:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.0.026/bin:/opt/sun-jdk-1.4.2.18/bin:/opt/sun-jdk-1.4.2.18/jre/bin:/opt/sun-jdk-1.4.2.18/jre/javaws:/data/scripts"
RPMDIR="/usr/portage/rpm"
SESSION_MANAGER="local/kancheli:/tmp/.ICE-unix/7872"
SGML_CATALOG_FILES="/etc/sgml/openjade-1.3.2.cat:/etc/sgml/xml-docbook-4.4.cat:/etc/sgml/xml-docbook-4.1.2.cat:/etc/sgml/sgml-docbook.cat:/etc/sgml/sgml-lite.cat:/etc/sgml/sgml-ent.cat:/etc/sgml/dsssl-docbook-stylesheets.cat:/etc/sgml/sgml-docbook-3.1.cat"
SHELL="/bin/bash"
SHLVL="1"
SSH_AGENT_PID="7952"
SSH_ASKPASS="/usr/bin/gtk2-ssh-askpass"
SSH_AUTH_SOCK="/tmp/ssh-AYOphT7951/agent.7951"
SURF_DIR="${DYNAMO_DIR}/surface"
SYNC="rsync://rsync.j-schmitz.net/gentoo-portage"
TERM="rxvt-unicode"
TRAP_FPE="OVERFL=ABORT; DIVZERO=ABORT; INVALID=ABORT"
USE="7zip X acpi additions alsa bash-completion berkdb branding bzip2 c++ cblas ccache cli command-args cracklib crypt cups cupsddk custom-optimization cxx dri dts fbcondecor fortran gdbm gif glibc-omitfp gnome gpm graphics gtk hddtemp iconv isdnlog java javascript jpeg kdeenablefinal lapack lcms libnotify lm_sensors mailtrain md5sum midi mmx mp3 mpi mudflap multiuser nagios-dns nagios-ntp nagios-ping nagios-ssh nano-syntax ncurses nis nls nptl nptlonly nsplugin objc objc++ opengl openmp openntpd oss pam pcre pdf perl png pppd pymol python qt-static qt3support readline reflection replytolist restrict-javascript rrdcgi rrdtool science sensord session smp spl sqlite sqlite3 sse sse2 ssl swat symlink sysfs tcpd threads tiff truetype type1 unicode x86 xcomposite xorg xulrunner zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en_GB en_US" USERLAND="GNU" VIDEO_CARDS="intel"
USER="justin"
USERLAND="GNU"
USERNAME="justin"
USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS USERLAND VIDEO_CARDS"
USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d"
VIDEO_CARDS="intel"
VMHANDLE="sun-jdk-1.4"
WINDOWID="44042661"
WINDOWPATH="7"
WINEPREFIX="/home/justin/.wine"
XAUTHORITY="/home/justin/.Xauthority"
XCURSORS_THEME="Jimmac"
XDG_DATA_DIRS="/usr/local/share/:/usr/share/:/usr/share/gdm/"
XSESSION="Gnome"
XUSERFILESEARCHPATH="/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults"
_="/usr/bin/emerge"
_POSIX2_VERSION="199209"