Build log

sci-chemistry:pdb2pqr-1.3.0:20081010-201455.log (text/plain), 4.61 KB, created by Diego Elio Pettenò (RETIRED) on 2008-10-10 21:19:55 UTC

 [32;01m*[0m You need one of these Fortran Compilers: g77 gfortran
 [32;01m*[0m Installed are:  gfortran
>>> Unpacking source...
>>> Unpacking pdb2pqr-1.3.0.tar.gz to /var/tmp/portage/sci-chemistry/pdb2pqr-1.3.0/work
 [32;01m*[0m Applying pdb2pqr-1.3.0-gcc4.3.patch ...
[A[72C  [34;01m[ [32;01mok[34;01m ][0m
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-chemistry/pdb2pqr-1.3.0/work/pdb2pqr-1.3.0 ...
 * econf: updating pdb2pqr-1.3.0/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating pdb2pqr-1.3.0/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating pdb2pqr-1.3.0/propka/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating pdb2pqr-1.3.0/propka/config/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --build=i686-pc-linux-gnu
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking target system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking for python... /usr/bin/python
checking for python include directory... -I/usr/include/python2.5
checking for --disable-propka... no

------------- Begin Processing PropKa Configure Options -----------
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking target system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for python... /usr/bin/python
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for python include directory... -I/usr/include/python2.5
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
------------- End Processing PropKa Configure Options -----------

checking for--disable-pdb2pka... no

------------- Begin Processing pdb2pka Configure Options -----------
checking whether you defined Numeric or Numpy... no
checking for Numeric include files... no
checking whether you defined numpy... no
checking for numpy includes files... configure: error: Unable to find Numeric or Numpy!  Please install Numeric or Numpy or specify the location with ./configure NUMPY=path_to_numpy or NUMERIC=path_to_numeric or disable PDB2PKA during configuration with --disable-pdb2pka

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-chemistry/pdb2pqr-1.3.0/work/pdb2pqr-1.3.0/config.log
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-chemistry/pdb2pqr-1.3.0 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m environment, line 3303:  Called econf
 [31;01m*[0m ebuild.sh, line  541:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m die "econf failed"
 [31;01m*[0m The die message:
 [31;01m*[0m econf failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-chemistry:pdb2pqr-1.3.0:20081010-201455.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pdb2pqr-1.3.0/temp/environment'.
 [31;01m*[0m