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Gentoo's Bugzilla – Attachment 160460 Details for
Bug 215877
new package request: sci-biology/cytoscape
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cytoscape-2.6.0.ebuild
cytoscape-2.6.0.ebuild (text/plain), 2.84 KB, created by
Andrey Kislyuk (RETIRED)
on 2008-07-15 16:04:18 UTC
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Description:
cytoscape-2.6.0.ebuild
Filename:
MIME Type:
Creator:
Andrey Kislyuk (RETIRED)
Created:
2008-07-15 16:04:18 UTC
Size:
2.84 KB
patch
obsolete
># Copyright 1999-2008 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: $ > >EAPI=1 > >EANT_ANT_TASKS="jakarta-regexp-1.4 batik-1.6 xalan xsdlib relaxng-datatype" >EANT_GENTOO_CLASSPATH="swing-layout-1,stax-ex,xmlstreambuffer,sjsxp,concurrent-util,jsr173,jsr181,jsr250,saaj-api,fastinfoset,itext,jdom-1.0,junit,colt" >JAVA_ANT_REWRITE_CLASSPATH="true" > >inherit versionator java-pkg-2 java-ant-2 eutils > >MY_PV=$(replace_all_version_separators '_') > >DESCRIPTION="A visualization platform for molecular interaction networks" >HOMEPAGE="http://www.cytoscape.org/" >SRC_URI="http://chianti.ucsd.edu/Cyto-${MY_PV}/cytoscapeSource-v${PV}.tar.gz" > >LICENSE="LGPL-2.1" >SLOT="0" >IUSE="" >KEYWORDS="~amd64 ~x86" > >COMMON_DEPS="dev-java/swing-layout:1 > dev-java/stax-ex > dev-java/xmlstreambuffer > dev-java/sjsxp > dev-java/concurrent-util > dev-java/jsr173 > dev-java/jsr181 > dev-java/jsr250 > java-virtuals/saaj-api > dev-java/fastinfoset > dev-java/itext > dev-java/jdom:1.0 > dev-java/junit > dev-java/colt" >DEPEND=">=virtual/jdk-1.6 > dev-java/jakarta-regexp:1.4 > dev-java/batik:1.6 > dev-java/xalan > dev-java/xsdlib > dev-java/relaxng-datatype > ${COMMON_DEPS}" >RDEPEND=">=virtual/jre-1.6 > ${COMMON_DEPS}" > ># app-misc/openjnlp ># dev-java/l2fprod-common - bug 216027 > >S="${WORKDIR}" > >src_unpack() { > unpack ${A} ># java-ant_remove-taskdefs > > einfo "Removing bundled jars..." > find -name 'batik*.jar' -print -delete > find -name 'jakarta*.jar' -print -delete > find -name 'xalan*.jar' -print -delete > find -name 'xsdlib*.jar' -print -delete > find -name 'relaxngDatatype.jar' -print -delete > find -name 'swing-layout.jar' -print -delete > find -name 'stax-ex.jar' -print -delete > find -name 'saaj.jar' -print -delete > find -name 'streambuffer.jar' -print -delete > find -name 'sjsxp.jar' -print -delete > find -name 'concurrent.jar' -print -delete > find -name 'jsr*.jar' -print -delete > find -name 'FastInfoset.jar' -print -delete > find -name 'jdom*.jar' -print -delete > find -name 'itext*.jar' -print -delete > find -name 'colt.jar' -print -delete > find -name 'junit.jar' -print -delete ># find -name 'jnlp.jar' -print -delete ># find -name 'jaxb*.jar' -print -delete ># find -name 'l2fprod-common*.jar' -print -delete > # Skip the jalopy ant build target (produces access violations) > perl -i -ne 'print unless /taskdef.*name="jalopy"/../<\/target>/' build.xml || die >} > >src_install() { > java-pkg_dojar cytoscape.jar > java-pkg_dojar lib/*.jar > java-pkg_jarinto /usr/share/${PN}/plugins > java-pkg_dojar plugins/core/*.jar > > # replacement for resources/bin/cytoscape.sh > java-pkg_dolauncher cytoscape.sh --main cytoscape.CyMain \ > --java_args '-Dswing.aatext=true -Xss5M -Xmx512M' \ > --pkg_args '-p '/usr/share/${PN}/plugins' \"$@\"' > insinto /usr/share/pixmaps > newins images/icon100.png cytoscape.png > make_desktop_entry cytoscape.sh Cytoscape /usr/share/pixmaps/cytoscape.png > > dodoc docs/pdf/manual.pdf >}
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bug 215877
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159916
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159986
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160002
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