# Copyright 1999-2003 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2

DESCRIPTION="PAML (Phylogenetic Analyses by Maximum Likelihood) is a package of programs for analyzing and inferring phylogenetic data"

HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
SRC_URI="ftp://abacus.gene.ucl.ac.uk/pub/paml/paml3.13d.tar.gz"

LICENSE="GPL"
SLOT="0"
KEYWORDS="x86"
IUSE=""
DEPEND=""

src_compile() {
   	cd ${WORKDIR}/paml3.13d/src 
	cp Makefile.UNIX Makefile
	# uses only makefile.
	# trying to use make.conf's CFLAGS
	EXTRA_EMAKE="-e ${CFLAGS}"
	emake || die
}

src_install() 
{
	cd ${WORKDIR}/paml3.13d/src
	DESTTREE=/usr/local/${P}
	dobin baseml basemlg codeml pamp evolver yn00 chi2 
	cd doc
	dodoc pamlDOC.pdf pamlHistory.txt paml.html
}

pkg_postinst()
{
	cp ${WORKDIR}/paml3.13d/* --recursive /usr/local/${P}
	mv /usr/local/${P}/bin/* /usr/local/${P}
	rm -rf /usr/local/${P}/{src,bin}
	rm /usr/local/${P}/*.exe
}