Portage 2.1.3.7 (default-linux/amd64/2007.0, gcc-4.2.0, glibc-2.6.1-r0, 2.6.22-gentoo-r2 x86_64) ================================================================= System uname: 2.6.22-gentoo-r2 x86_64 Intel(R) Core(TM)2 CPU 6600 @ 2.40GHz Gentoo Base System release 1.12.10 Timestamp of tree: Sat, 25 Aug 2007 07:00:01 +0000 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] dev-java/java-config: 1.3.7, 2.0.33-r1 dev-lang/python: 2.4.4-r5, 2.5.1-r2 dev-python/pycrypto: 2.0.1-r6 sys-apps/sandbox: 1.2.18.1 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17.50.0.18 sys-devel/gcc-config: 1.4.0 sys-devel/libtool: 1.5.24 virtual/os-headers: 2.6.22-r2 ABI="amd64" ACCEPT_KEYWORDS="amd64 ~amd64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ANT_HOME="/usr/share/ant" ARCH="amd64" ASFLAGS_x86="--32" AUTOCLEAN="yes" AVAIL_SERVERS="condor cheetah tarantel grizzly vilm" AVAIL_SERVERS_FILE="/var/run/AVAIL_SERVERS_FILE" BABEL_DIR="/usr/share/babel" BIBINPUTS=".::/root/Txt/tex2e/bib//" BIOINF="/usr/local/Bioinf" BLASTDB="/usr/share/ncbi/formatdb" BLASTMAT="/usr/share/ncbi/data" CBUILD="x86_64-pc-linux-gnu" CDEFINE_amd64="__x86_64__" CDEFINE_x86="__i386__" CDF_BASE="/usr" CDF_BIN="${CDF_BASE}/bin" CDF_HELP="${CDF_BASE}/lib/cdf/help" CDF_INC="${CDF_BASE}/include" CDF_LIB="${CDF_BASE}/lib" CFLAGS="-march=nocona -O2 -pipe" CFLAGS_x86="-m32 -L/emul/linux/x86/lib -L/emul/linux/x86/usr/lib" CG_COMPILER_EXE="/usr/bin/cgc" CHOST="x86_64-pc-linux-gnu" CHOST_amd64="x86_64-pc-linux-gnu" CHOST_x86="i686-pc-linux-gnu" CLASSPATH="." CLEAN_DELAY="5" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c" CVS_RSH="ssh" CXXFLAGS="-march=nocona -O2 -pipe" DCCC_PATH="/usr/lib/distcc/bin" DEFAULT_ABI="amd64" DISPLAY=":0.0" DISTCC_HOSTS="localhost condor/3 shark/3 grizzly/3 cheetah/2 tarantel/2" DISTCC_LOG="/var/log/distcc.log" DISTCC_VERBOSE="1" DISTDIR="/usr/portage/distfiles" EDITOR="emacs -nw" ELIBC="glibc" EMBOSS_ACDROOT="/usr/share/EMBOSS/acd" EMERGE_WARNING_DELAY="10" EROOT="/usr/local" EXPORT_DIRS="/home /usr/src /data /usr/portage /usr/local/Bioinf /usr/local/gis" FEATURES="distlocks fixpackages metadata-transfer sandbox sfperms strict unmerge-orphans userfetch" FETCHCOMMAND="/usr/bin/wget -t 5 -T 60 --passive-ftp -O ${DISTDIR}/${FILE} ${URI}" FILE_SERVERS="ap2 cheetah tarantel grizzly condor vilm thinkpad" FLTK_DOCDIR="/usr/share/doc/fltk-1.1.7-r2/html" GCC_SPECS="" GCONF_LOCAL_LOCKS="1" GDK_USE_XFT="1" GENERATION="2" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" GLOBAL_CONF_DIR="/home_tarantel/rose" GMTHOME="/usr/share/gmt-4.1.1" GRASS_LD_LIBRARY_PATH="/usr/grass62/lib" GUILE_LOAD_PATH="/usr/share/guile/1.8" G_BROKEN_FILENAMES="1" G_FILENAME_ENCODING="UTF-8" HISTFILE=".bash_history" HISTFILESIZE="500" HISTSIZE="500" HMMER_NCPU="2" HOME="/root" HOST="condor" HOSTNAME="condor" INFOPATH="/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.17.50.0.18/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.2.0/info:/usr/share/info/emacs-22" INPUT_DEVICES="keyboard mouse" JAVAC="/etc/java-config-2/current-system-vm/bin/javac" JAVACC_HOME="/usr/share/javacc/" JAVA_HOME="/etc/java-config-2/current-system-vm" JDK_HOME="/etc/java-config-2/current-system-vm" JR_OBJ_ROOT="/root/Txt/src/" JR_SRC_ROOT="/root/Txt/src/" KDEDIRS="/usr:/usr/local:/usr/kde/3.5" KERNEL="linux" LADSPA_PATH="/usr/lib64/ladspa" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LC_ALL="C" LDFLAGS_x86="-m elf_i386 -L/emul/linux/x86/lib -L/emul/linux/x86/usr/lib" LESS="-R -M --shift 5" LESSOPEN="|lesspipe.sh %s" LEVEL="" LEVEL_INC=" " LIBDIR_amd64="lib64" LIBDIR_x86="lib32" LINGUAS="de fr" LOCATE_PATH="/var/spool/locate/condor:/var/spool/locate/home_condor:/var/spool/locate/usr_src_condor:/var/spool/locate/data_condor:/var/spool/locate/usr_portage_condor:/var/spool/locate/usr_local_Bioinf_condor:/var/spool/locate/usr_local_gis_condor:/disk/cheetah_var/spool/locate/home_cheetah:/disk/cheetah_var/spool/locate/usr_src_cheetah:/disk/cheetah_var/spool/locate/data_cheetah:/disk/cheetah_var/spool/locate/usr_portage_cheetah:/disk/cheetah_var/spool/locate/usr_local_Bioinf_cheetah:/disk/cheetah_var/spool/locate/usr_local_gis_cheetah:/disk/tarantel_var/spool/locate/home_tarantel:/disk/tarantel_var/spool/locate/usr_src_tarantel:/disk/tarantel_var/spool/locate/data_tarantel:/disk/tarantel_var/spool/locate/usr_portage_tarantel:/disk/tarantel_var/spool/locate/usr_local_Bioinf_tarantel:/disk/tarantel_var/spool/locate/usr_local_gis_tarantel:/disk/grizzly_var/spool/locate/home_grizzly:/disk/grizzly_var/spool/locate/usr_src_grizzly:/disk/grizzly_var/spool/locate/data_grizzly:/disk/grizzly_var/spool/locate/usr_portage_grizzly:/disk/grizzly_var/spool/locate/usr_local_Bioinf_grizzly:/disk/grizzly_var/spool/locate/usr_local_gis_grizzly:/disk/vilm_var/spool/locate/home_vilm:/disk/vilm_var/spool/locate/usr_src_vilm:/disk/vilm_var/spool/locate/data_vilm:/disk/vilm_var/spool/locate/usr_portage_vilm:/disk/vilm_var/spool/locate/usr_local_Bioinf_vilm:/disk/vilm_var/spool/locate/usr_local_gis_vilm" LOCATE_PATH_FILE="/var/run/LOCATE_PATH" LOCATE_VERSION="Secure Locate" LOGNAME="root" LS_COLORS="no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:" MAILCHECK="30" MAIN_FILESERVER="tarantel" MAKEOPTS="-j3" MANPATH="/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.17.50.0.18/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.2.0/man:/opt/blackdown-jdk-1.4.2.03/man:/etc/java-config/system-vm/man/:/usr/lib64/php5/man/:/usr/kde/3.5/share/man:/usr/qt/3/doc/man:/usr/local/man" MENU_TXT="\n/root/sys_config\n f1:1376 Aug 23 13:40 /\n crontab_-l\n/home_tarantel/rose/sys_config\n f2:1537 Jun 30 19:19 /\n crontab_-l\n2c2\n< # (/tmp/crontab.XXXXSLY03I installed on Fri Jun 22 20:36:41 2007)\n---\n> # (/tmp/crontab.XXXXW2E9qB installed on Sun Jun 17 13:21:42 2007)\n23a24,26\n> # get Interface statistics\n> #0,5,10,15,20,25,30,35,40,45,50,55 * * * * /usr/local/mrtg-2/bin/mrtg /var/www/htdocs/mrtg...\n> #\n" ME_HELP="/root/bin/med.hlp" MULTILIB_ABIS="amd64 x86" MULTILIB_STRICT_DENY="64-bit.*shared object" MULTILIB_STRICT_DIRS="/lib /usr/lib /usr/kde/*/lib /usr/qt/*/lib /usr/X11R6/lib" MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage)" NCBI="/etc/ncbi" NNTPSERVER="news.uni-potsdam.de" NOCOLOR="true" OLDPWD="/usr/src" OPENGL_PROFILE="nvidia" PAGER="less -c -e -R" PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.2.0:/opt/ghc/bin:/opt/blackdown-jdk-1.4.2.03/bin:/opt/blackdown-jdk-1.4.2.03/jre/bin:/usr/kde/3.5/sbin:/usr/kde/3.5/bin:/usr/qt/3/bin:/usr/share/texmf/scripts/uniqleaf:/usr/share/texmf/scripts/thumbpdf:/root/scripts:/root/scripts_private" PKGDIR="/usr/portage/packages" PKG_CONFIG_PATH="/usr/qt/3/lib64/pkgconfig:/usr/qt/3/lib32/pkgconfig" PLPLOT_LIB="/usr/share/EMBOSS/" PORTAGE_ARCHLIST="ppc s390 amd64 x86 ppc64 x86-fbsd m68k arm sparc sh mips ia64 alpha ppc-macos hppa sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib64/portage/bin" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ELOG_CLASSES="log warn error" PORTAGE_ELOG_MAILFROM="portage" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SYSTEM="save_summary echo" PORTAGE_GID="250" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib64/portage/pym" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*" PORTAGE_RSYNC_RETRIES="3" PORTAGE_TMPDIR="/var/tmp" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/science /usr/portage/local/layman/xeffects" PRELINK_PATH_MASK="/usr/lib/gstreamer-0.10:/usr/lib/gstreamer-0.8" PROMPT_COMMAND="PS1=$PS1" PS1="\[\033[01;31m\]root@condor:\[\033[01;34m\]/usr/src/linux(\#)# \[\033[00m\]" PVM_ARCH="LINUX" PWD="/usr/src/linux" PYTHONPATH="/usr/lib64/portage/pym" QMAKESPEC="linux-g++" QTDIR="/usr/qt/3" RESUMECOMMAND="/usr/bin/wget -c -t 5 -T 60 --passive-ftp -O ${DISTDIR}/${FILE} ${URI}" ROOT="/" ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.2.0:/opt/ghc/bin:/opt/blackdown-jdk-1.4.2.03/bin:/opt/blackdown-jdk-1.4.2.03/jre/bin:/usr/kde/3.5/sbin:/usr/kde/3.5/bin:/usr/qt/3/bin" RPMDIR="/usr/portage/rpm" RUBYOPT="-rauto_gem" SANE_CONFIG_DIR="/etc/sane.d" SHELL="/bin/bash" SHLVL="1" SKIMFROM="rose@bioinf.cs.uni-potdam.de (Juergen Rose)" SSH_AGENT_PID="2343" SSH_ASKPASS="/usr/bin/gtk2-ssh-askpass" SSH_AUTH_SOCK="/tmp/ssh-dbvXgf2342/agent.2342" STAGE1_USE="nptl nptlonly unicode" SYMLINK_LIB="yes" SYNC="rsync://rsync.gentoo.org/gentoo-portage" TEMP="/tmp/" TERM="xterm" TEXFONTS=":/root/Txt/tex2e/inputs//:/var/cache/fonts/pk//:/var/tmp/texfonts/pk//" TEXINPUTS=".::/root/Txt/tex2e/inputs//:/usr/local/lib/tex/macros//" TMAKEPATH="/usr/lib/tmake/linux-g++" TMP="/tmp" TMPDIR="/tmp" UPDATEDB_CMD="PRUNEPATH="/tmp /usr/tmp /var/tmp /afs /proc /disk " ; outfile=/var/spool/locate/condor ; echo "Host=|$Host| outfile=|$outfile| DEBUG=|$DEBUG| dbg_level=|$dbg_level| UPDATE_DB_OPTS=|$UPDATE_DB_OPTS|" ; echo "--- before 'updatedb $UPDATE_DB_OPTS -e $Exclude --output=$outfile'" ; ( unset LOCATE_PATH ; updatedb $UPDATE_DB_OPTS -e $Exclude --output=$outfile ); echo "--- after 'updatedb $UPDATE_DB_OPTS -e $Exclude --output=$outfile'" ; if [ -n "$EXPORT_DIRS" ] ; then for p in $EXPORT_DIRS ; do if [ -d ${p}_$Host ]; then outfile=/var/spool/locate/`echo $p | sed -e "s#/##" | sed -e "s#/#_#g"`_$Host ; echo "p=$p --- before 'updatedb $UPDATE_DB_OPTS -U ${p}_$Host --output=$outfile'" ; ( unset LOCATE_PATH ; updatedb $UPDATE_DB_OPTS -U ${p}_$Host --output=$outfile ); echo "--- after 'updatedb $UPDATE_DB_OPTS -U ${p}_$Host --output=$outfile'" ; fi ; done ; fi " USB_DEVFS_PATH="/dev/bus/usb" USE="X Xaw3d a52 aac acl acpi aiglx alsa amd64 amrr ao aotuv apache2 asf atlas auctex audacious audiofile automount beagle berkdb bitmap-fonts blas bluetooth bonobo boo bzip2 cairo cdda cddb cdio cdparanoia cdr cgi chm cli corba cracklib crypt cups curl daap dbus device-mapper dga divx dlloader dmi dri dv dvb dvd dvdr dvi dxr3 dynagraph effects elf emacs emboss encode epiphany esd evo evolution exif expat fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx galago gdal gdbm geos gif gimp gimpprint ginac glade glitz gml gmp gnome gnuplot gnutls gphoto2 gpm graphviz grass gs gsl gsm gstreamer gtk guile hal hddtemp hdf hdf5 hlapi iconv icq id3 imagemagick innodb ipv6 isdnlog ithreads jabber java jbig john jp2 jpeg jpeg2k kexi ladspa lame lapack latex lcms ldap libgda libsamplerate lirc lm_sensors lua lzo lzw mad math matroska midi mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4live mpeg mpeg2 mplayer mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf network nfs nls nntp nptl nptlonly ntfs numarray numeric nvidia ocaml octave odbc ogdi ogg ole opengl openmp pae pam pcre pdf perl plotutils png posix postgres pppd preview-latex proj python qhull quicktime readline reflection reiserfs rhythmbox rle rrdcgi rrdtool samba sdl session slang slp smp sndfile snmp sox speex spell spl sqlite sse sse2 ssl subtitles svg t1lib tcltk tcpd tetex theora threads thunderbird tidy tiff tk truetype truetype-fonts type1-fonts unicode userlocales utempter v4l2 vorbis wmf xattr xemacs xext xine xml xmlreader xmlrpc xorg xpm xv xvid xvmc zlib zvbi" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" USERLAND="GNU" VIDEO_CARDS="nv nvidia vesa fbdev" USER="root" USERLAND="GNU" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS USERLAND VIDEO_CARDS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VIDEO_CARDS="nv nvidia vesa fbdev" VISUAL="emacs -nw" VMHANDLE="blackdown-jdk-1.4.2" VTKHOME="/usr" VTK_DATA_ROOT="/usr/share/vtk/data" VTK_DIR="/usr/lib/vtk-5.0" XARGS="xargs -r" XAUTHORITY="/root/.xauthaY07Nz" XDG_DATA_DIRS="/usr/share:/usr/kde/3.5/share:/usr/local/share" _="/usr/bin/emerge"