# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

inherit toolchain-funcs flag-o-matic

DESCRIPTION="The Self-Organizing Map for Biological Regulatory Element Recognition and Ordering"
HOMEPAGE="http://bioinf.nuigalway.ie/sombrero/index.html"
SOMP="SOMBRERO_v.${PV}_MPI_source.zip"
SRC_URI="http://bioinf.nuigalway.ie/sombrero/binaries/${SOMP}"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~x86 ~amd64 ~alpha ~ia64"
IUSE="X"

DEPEND="virtual/mpi
X? (dev-perl/perl-tk)"
RDEPEND="${DEPEND}"

src_compile() {
	cd ${WORKDIR}
	/usr/bin/mpic++ ${CXXFLAGS} Utilities.cpp SOM.cpp main.cpp -lm -lmpi -o sombrero-mpi
}

src_install() {
	cd ${WORKDIR}
	dobin sombrero-mpi
	dobin BackExtract.pl
	if use X; then
		dobin SOMBREROView.pl
	fi

}