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Lines 49-55
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| 49 |
// Background::Background |
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// Background::Background |
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// Background constructor for a given fasta file and sequence type (aac or nt) |
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// Background constructor for a given fasta file and sequence type (aac or nt) |
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// |
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// |
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Background::Background(GFastaFile *F,FILE *outfile,const seqType t,double e=0.0000001) |
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//Background::Background(GFastaFile *F,FILE *outfile,const seqType t,double e=0.0000001) |
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Background::Background(GFastaFile *F,FILE *outfile,const seqType t,double e) |
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{ |
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{ |
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outf=outfile; |
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outf=outfile; |
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eps=e; |
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eps=e; |
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Lines 386-392
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| 386 |
// apply_test_wilcoxon_pair |
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// apply_test_wilcoxon_pair |
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// applies the wilcoxon pair test on a vector of differences |
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// applies the wilcoxon pair test on a vector of differences |
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// |
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// |
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void apply_test_wilcoxon_pair(FILE *outf,int diffno, FreqPos *diff,int print=1) |
390 |
//void apply_test_wilcoxon_pair(FILE *outf,int diffno, FreqPos *diff,int print=1) |
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391 |
void apply_test_wilcoxon_pair(FILE *outf,int diffno, FreqPos *diff,int print) |
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{ |
392 |
{ |
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double *rank; |
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double *rank; |
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Lines 1543-1549
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| 1543 |
// Motif::printMotif |
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// Motif::printMotif |
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// prints the motif |
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// prints the motif |
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// |
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// |
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void Motif::printMotif(int printmax,int SignifNo,int print=1) |
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//void Motif::printMotif(int printmax,int SignifNo,int print=1) |
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1549 |
void Motif::printMotif(int printmax,int SignifNo,int print) |
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{ |
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{ |
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fprintf(B->outf,"Motif found:\n\n"); |
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fprintf(B->outf,"Motif found:\n\n"); |
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1552 |
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Lines 2130-2136
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| 2130 |
// statistical significance after the test sequences have been created; |
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// statistical significance after the test sequences have been created; |
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// can be deterministic (when det=1) or not |
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// can be deterministic (when det=1) or not |
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// |
2135 |
// |
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void Motif::testsignif(int det,char **fkseq, int *posfreqlen,int print=1) |
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//void Motif::testsignif(int det,char **fkseq, int *posfreqlen,int print=1) |
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2137 |
void Motif::testsignif(int det,char **fkseq, int *posfreqlen,int print) |
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{ |
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{ |
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FreqPos diff[B->noseq]; |
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FreqPos diff[B->noseq]; |
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unsigned long int diffno=0; |
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unsigned long int diffno=0; |
