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Gentoo's Bugzilla – Attachment 121341 Details for
Bug 181109
>=sci-libs/scipy-0.5.2 fails with dev-python/numpy-1.0.3
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a build log
build.log (text/plain), 9.06 KB, created by
Jukka Ruohonen
on 2007-06-06 18:37:31 UTC
(
hide
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Description:
a build log
Filename:
MIME Type:
Creator:
Jukka Ruohonen
Created:
2007-06-06 18:37:31 UTC
Size:
9.06 KB
patch
obsolete
> [32;01m*[0m You need one of these Fortran Compilers: gfortran g77 > [32;01m*[0m Installed are: gfortran >>>> Unpacking source... >>>> Unpacking scipy-0.5.2.tar.gz to /var/tmp/portage/sci-libs/scipy-0.5.2-r1/work > [32;01m*[0m Applying patches for selected FORTRAN compiler: gfortran >>>> Source unpacked. >>>> Compiling source in /var/tmp/portage/sci-libs/scipy-0.5.2-r1/work/scipy-0.5.2 ... >mkl_info: > libraries mkl,vml,guide not found in /usr/local/lib > libraries mkl,vml,guide not found in /usr/lib > NOT AVAILABLE > >fftw3_info: > libraries fftw3 not found in /usr/local/lib > FOUND: > libraries = ['fftw3'] > library_dirs = ['/usr/lib'] > define_macros = [('SCIPY_FFTW3_H', None)] > include_dirs = ['/usr/include'] > >djbfft_info: >Disabled djbfft_info: (DJBFFT is None) >Disabled djbfft_info: (DJBFFT is None) > NOT AVAILABLE > >blas_opt_info: >blas_mkl_info: > libraries mkl,vml,guide not found in /usr/local/lib > libraries mkl,vml,guide not found in /usr/lib > NOT AVAILABLE > >atlas_blas_threads_info: >Setting PTATLAS=ATLAS > libraries ptf77blas,cblas,atlas not found in /usr/local/lib > libraries ptf77blas,cblas,atlas not found in /usr/lib > NOT AVAILABLE > >atlas_blas_info: > libraries blas,cblas,atlas not found in /usr/local/lib > FOUND: > libraries = ['blas', 'cblas', 'atlas'] > library_dirs = ['/usr/lib'] > language = c > include_dirs = ['/usr/include/atlas'] > >customize GnuFCompiler >Could not locate executable g77 >Could not locate executable f77 >Could not locate executable ifort >Could not locate executable ifc >Could not locate executable ifort >Could not locate executable efort >Could not locate executable efc >Could not locate executable ifort >Could not locate executable efort >Could not locate executable efc >customize IntelFCompiler >customize LaheyFCompiler >customize PGroupFCompiler >customize AbsoftFCompiler >customize NAGFCompiler >customize VastFCompiler >customize GnuFCompiler >Could not locate executable g77 >Could not locate executable f77 >customize CompaqFCompiler >customize IntelItaniumFCompiler >customize IntelEM64TFCompiler >customize Gnu95FCompiler >Could not locate executable f95 >customize Gnu95FCompiler >Could not locate executable f95 >customize Gnu95FCompiler using config >compiling '_configtest.c': > >/* This file is generated from numpy/distutils/system_info.py */ >void ATL_buildinfo(void); >int main(void) { > ATL_buildinfo(); > return 0; >} >C compiler: x86_64-pc-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -march=athlon64 -msse3 -O2 -pipe -fPIC > >compile options: '-c' >x86_64-pc-linux-gnu-gcc: _configtest.c >x86_64-pc-linux-gnu-gcc -pthread _configtest.o -L/usr/lib -lblas -lcblas -latlas -o _configtest >ATLAS version 3.7.32 built by root on Wed Jun 6 20:38:12 EEST 2007: > UNAME : Linux zealot 2.6.20-hardened-r4 #1 SMP Tue May 29 15:13:36 EEST 2007 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 3800+ AuthenticAMD GNU/Linux > INSTFLG : -1 0 -a 1 > ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=2000 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS -DATL_GAS_x8664 > F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle > CACHEEDGE: 1572864 > F77 : gfortran, version GNU Fortran 95 (GCC) 4.1.1 (Gentoo 4.1.1-r3) > F77FLAGS : -m64 > SMC : x86_64-pc-linux-gnu-gcc, version x86_64-pc-linux-gnu-gcc (GCC) 4.1.1 (Gentoo 4.1.1-r3) > SMCFLAGS : -march=athlon64 -msse3 -O2 -pipe -m64 > SKC : x86_64-pc-linux-gnu-gcc, version x86_64-pc-linux-gnu-gcc (GCC) 4.1.1 (Gentoo 4.1.1-r3) > SKCFLAGS : -march=athlon64 -msse3 -O2 -pipe -m64 >success! >removing: _configtest.c _configtest.o _configtest > FOUND: > libraries = ['blas', 'cblas', 'atlas'] > library_dirs = ['/usr/lib'] > language = c > define_macros = [('ATLAS_INFO', '"\\"3.7.32\\""')] > include_dirs = ['/usr/include/atlas'] > >ATLAS version 3.7.32 >lapack_opt_info: >lapack_mkl_info: > NOT AVAILABLE > >atlas_threads_info: >Setting PTATLAS=ATLAS > libraries ptf77blas,cblas,atlas not found in /usr/local/lib > libraries lapack not found in /usr/local/lib > libraries ptf77blas,cblas,atlas not found in /usr/lib >numpy.distutils.system_info.atlas_threads_info > NOT AVAILABLE > >atlas_info: > libraries blas,cblas,atlas not found in /usr/local/lib > libraries lapack not found in /usr/local/lib >numpy.distutils.system_info.atlas_info > FOUND: > libraries = ['lapack', 'blas', 'cblas', 'atlas'] > library_dirs = ['/usr/lib'] > language = f77 > include_dirs = ['/usr/include/atlas'] > >customize GnuFCompiler >Could not locate executable g77 >Could not locate executable f77 >customize IntelFCompiler >customize LaheyFCompiler >customize PGroupFCompiler >customize AbsoftFCompiler >customize NAGFCompiler >customize VastFCompiler >customize GnuFCompiler >Could not locate executable g77 >Could not locate executable f77 >customize CompaqFCompiler >customize IntelItaniumFCompiler >customize IntelEM64TFCompiler >customize Gnu95FCompiler >Could not locate executable f95 >customize Gnu95FCompiler >Could not locate executable f95 >customize Gnu95FCompiler using config >compiling '_configtest.c': > >/* This file is generated from numpy/distutils/system_info.py */ >void ATL_buildinfo(void); >int main(void) { > ATL_buildinfo(); > return 0; >} >C compiler: x86_64-pc-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -march=athlon64 -msse3 -O2 -pipe -fPIC > >compile options: '-c' >x86_64-pc-linux-gnu-gcc: _configtest.c >x86_64-pc-linux-gnu-gcc -pthread _configtest.o -L/usr/lib -llapack -lblas -lcblas -latlas -o _configtest >ATLAS version 3.7.32 built by root on Wed Jun 6 20:38:12 EEST 2007: > UNAME : Linux zealot 2.6.20-hardened-r4 #1 SMP Tue May 29 15:13:36 EEST 2007 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 3800+ AuthenticAMD GNU/Linux > INSTFLG : -1 0 -a 1 > ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=2000 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS -DATL_GAS_x8664 > F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle > CACHEEDGE: 1572864 > F77 : gfortran, version GNU Fortran 95 (GCC) 4.1.1 (Gentoo 4.1.1-r3) > F77FLAGS : -m64 > SMC : x86_64-pc-linux-gnu-gcc, version x86_64-pc-linux-gnu-gcc (GCC) 4.1.1 (Gentoo 4.1.1-r3) > SMCFLAGS : -march=athlon64 -msse3 -O2 -pipe -m64 > SKC : x86_64-pc-linux-gnu-gcc, version x86_64-pc-linux-gnu-gcc (GCC) 4.1.1 (Gentoo 4.1.1-r3) > SKCFLAGS : -march=athlon64 -msse3 -O2 -pipe -m64 >success! >removing: _configtest.c _configtest.o _configtest > FOUND: > libraries = ['lapack', 'blas', 'cblas', 'atlas'] > library_dirs = ['/usr/lib'] > language = f77 > define_macros = [('ATLAS_INFO', '"\\"3.7.32\\""')] > include_dirs = ['/usr/include/atlas'] > >ATLAS version 3.7.32 >ATLAS version 3.7.32 >non-existing path in 'Lib/linsolve': 'tests' >umfpack_info: >Disabled umfpack_info: (UMFPACK is None) >/usr/lib64/python2.4/site-packages/numpy/distutils/system_info.py:403: UserWarning: > UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/) > not found. Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [umfpack]) or by setting > the UMFPACK environment variable. > warnings.warn(self.notfounderror.__doc__) > NOT AVAILABLE > >non-existing path in 'Lib/maxentropy': 'doc' >Traceback (most recent call last): > File "setup.py", line 55, in ? > setup_package() > File "setup.py", line 47, in setup_package > configuration=configuration ) > File "/usr/lib64/python2.4/site-packages/numpy/distutils/core.py", line 142, in setup > config = configuration() > File "setup.py", line 19, in configuration > config.add_subpackage('Lib') > File "/usr/lib64/python2.4/site-packages/numpy/distutils/misc_util.py", line 772, in add_subpackage > caller_level = 2) > File "/usr/lib64/python2.4/site-packages/numpy/distutils/misc_util.py", line 755, in get_subpackage > caller_level = caller_level + 1) > File "/usr/lib64/python2.4/site-packages/numpy/distutils/misc_util.py", line 702, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "/var/tmp/portage/sci-libs/scipy-0.5.2-r1/work/scipy-0.5.2/Lib/setup.py", line 15, in configuration > config.add_subpackage('odr') > File "/usr/lib64/python2.4/site-packages/numpy/distutils/misc_util.py", line 772, in add_subpackage > caller_level = 2) > File "/usr/lib64/python2.4/site-packages/numpy/distutils/misc_util.py", line 755, in get_subpackage > caller_level = caller_level + 1) > File "/usr/lib64/python2.4/site-packages/numpy/distutils/misc_util.py", line 687, in _get_configuration_from_setup_py > ('.py', 'U', 1)) > File "Lib/odr/setup.py", line 9, in ? > from numpy.distutils.misc_util import get_path, Configuration, dot_join >ImportError: cannot import name get_path > >!!! ERROR: sci-libs/scipy-0.5.2-r1 failed. >Call stack: > ebuild.sh, line 1615: Called dyn_compile > ebuild.sh, line 972: Called qa_call 'src_compile' > ebuild.sh, line 44: Called src_compile > scipy-0.5.2-r1.ebuild, line 91: Called distutils_src_compile 'config_fc' '--fcompiler=gnu95' '--opt=-march=athlon64 -msse3 -O2 -pipe' > distutils.eclass, line 38: Called die > >!!! compilation failed >!!! If you need support, post the topmost build error, and the call stack if relevant. >!!! A complete build log is located at '/var/tmp/portage/sci-libs/scipy-0.5.2-r1/temp/build.log'. >
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bug 181109
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121342