build.log without fortran

build.log (text/plain), 32.78 KB, created by George on 2007-05-21 16:21:25 UTC

>>> Unpacking source...
>>> Unpacking netcdf-3.6.2.tar.gz to /var/tmp/portage/sci-libs/netcdf-3.6.2/work
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2 ...
 * econf: updating netcdf-3.6.2/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating netcdf-3.6.2/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-shared --docdir=/usr/share/doc/netcdf-3.6.2 --disable-flag-setting --disable-docs-install --disable-f77 --disable-f90 --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu
configure: loading cache /dev/null
/dev/null: line 1: ./configure:: No such file or directory
configure: netCDF 3.6.2
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
configure: checking user options
checking whether CXX is set to ''... no
checking whether FC is set to ''... no
checking whether F90 is set to ''... no
checking whether documentation is to be installed... no
checking whether Fortran compiler(s) should be tested during configure... yes
checking whether configure should try to set compiler flags... no
checking whether FFIO will be used... no
checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes
checking whether only the C library is desired... no
checking whether examples should be built... yes
checking whether F77 API is desired... no
checking whether F90 API is desired... no
checking whether fortran type sizes should be checked... yes
checking whether C API is desired... yes
checking where to get netCDF C-only library for separate fortran libraries... 
checking whether CXX API is desired... yes
checking whether v2 netCDF API should be built... yes
checking whether the ncgen/ncdump should be built... yes
checking whether large file (> 2GB) tests should be run... no
checking whether extreme numbers should be used in tests... yes
checking where to put large temp files if large file tests are run... .
checking whether a win32 DLL is desired... no
checking whether separate fortran libs are desired... yes
configure: finding C compiler
checking for x86_64-pc-linux-gnu-xlc... no
checking for x86_64-pc-linux-gnu-cc... no
checking for x86_64-pc-linux-gnu-c89... no
checking for x86_64-pc-linux-gnu-acc... no
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking for an ANSI C-conforming const... yes
configure: finding Fortran compiler (will not be used if Fortran API is not desired)
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-fort... no
checking for x86_64-pc-linux-gnu-xlf95... no
checking for x86_64-pc-linux-gnu-ifort... no
checking for x86_64-pc-linux-gnu-ifc... no
checking for x86_64-pc-linux-gnu-efc... no
checking for x86_64-pc-linux-gnu-pgf95... no
checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-fort... no
checking for x86_64-pc-linux-gnu-xlf95... no
checking for x86_64-pc-linux-gnu-ifort... no
checking for x86_64-pc-linux-gnu-ifc... no
checking for x86_64-pc-linux-gnu-efc... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
configure: finding C++ compiler (will not be used if C++ API is not desired)
checking for x86_64-pc-linux-gnu-cl... no
checking for x86_64-pc-linux-gnu-KCC... no
checking for x86_64-pc-linux-gnu-CC... no
checking for x86_64-pc-linux-gnu-cxx... no
checking for x86_64-pc-linux-gnu-cc++... no
checking for x86_64-pc-linux-gnu-xlC... no
checking for x86_64-pc-linux-gnu-aCC... no
checking for x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-c++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-c++... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 32768
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking how to recognise dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm output from x86_64-pc-linux-gnu-gcc object... failed
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-c++ accepts -g... (cached) yes
checking dependency style of x86_64-pc-linux-gnu-c++... (cached) gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-c++ -E
checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by x86_64-pc-linux-gnu-c++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-c++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-c++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: finding other utilities
checking for a BSD-compatible install... /usr/bin/install -c
checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES=
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: displaying some results
checking CPPFLAGS...  -DNDEBUG
checking CC CFLAGS... x86_64-pc-linux-gnu-gcc -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3
checking type x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc is /usr/bin/x86_64-pc-linux-gnu-gcc
checking CXX... x86_64-pc-linux-gnu-c++
checking CXXFLAGS... -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3
checking type x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++ is /usr/bin/x86_64-pc-linux-gnu-c++
checking FC... x86_64-pc-linux-gnu-gfortran
checking FFLAGS... -g -O2
checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran
checking F90... unset
checking AR... x86_64-pc-linux-gnu-ar
checking ARFLAGS... 
checking type x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar
checking NM... /usr/bin/x86_64-pc-linux-gnu-nm
checking NMFLAGS... 
configure: checking types, headers, and functions
checking for stdlib.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for strlcat... no
checking for strerror... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for struct stat.st_blksize... yes
checking for IEEE floating point format... yes
checking for size_t... yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking for short... yes
checking size of short... 2
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 8
checking for float... yes
checking size of float... 4
checking for double... yes
checking size of double... 8
checking for off_t... (cached) yes
checking size of off_t... 8
checking for size_t... (cached) yes
checking size of size_t... 8
checking for manual-page index command... 
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
configure: generating header files and makefiles
configure: creating ./config.status
config.status: creating Makefile
config.status: creating man/Makefile
config.status: creating fortran/Makefile
config.status: creating libsrc/Makefile
config.status: creating nctest/Makefile
config.status: creating nc_test/Makefile
config.status: creating ncdump/Makefile
config.status: creating ncgen/Makefile
config.status: creating nf_test/Makefile
config.status: creating cxx/Makefile
config.status: creating f90/Makefile
config.status: creating examples/Makefile
config.status: creating examples/C/Makefile
config.status: creating examples/CDL/Makefile
config.status: creating examples/CXX/Makefile
config.status: creating examples/F90/Makefile
config.status: creating examples/F77/Makefile
config.status: creating config.h
config.status: creating fortran/nfconfig1.inc
config.status: executing depfiles commands
config.status: executing libtool commands
make  all-recursive
make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2'
Making all in libsrc
make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/libsrc'
depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT attr.lo -MD -MP -MF "$depbase.Tpo" -c -o attr.lo attr.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c  -fPIC -DPIC -o .libs/attr.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o >/dev/null 2>&1
depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT ncx.lo -MD -MP -MF "$depbase.Tpo" -c -o ncx.lo ncx.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c  -fPIC -DPIC -o .libs/ncx.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o >/dev/null 2>&1
depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT putget.lo -MD -MP -MF "$depbase.Tpo" -c -o putget.lo putget.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c  -fPIC -DPIC -o .libs/putget.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o >/dev/null 2>&1
depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT dim.lo -MD -MP -MF "$depbase.Tpo" -c -o dim.lo dim.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c  -fPIC -DPIC -o .libs/dim.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o >/dev/null 2>&1
depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT error.lo -MD -MP -MF "$depbase.Tpo" -c -o error.lo error.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c  -fPIC -DPIC -o .libs/error.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o >/dev/null 2>&1
depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT libvers.lo -MD -MP -MF "$depbase.Tpo" -c -o libvers.lo libvers.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c  -fPIC -DPIC -o .libs/libvers.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o >/dev/null 2>&1
depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT nc.lo -MD -MP -MF "$depbase.Tpo" -c -o nc.lo nc.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c  -fPIC -DPIC -o .libs/nc.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o >/dev/null 2>&1
depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT string.lo -MD -MP -MF "$depbase.Tpo" -c -o string.lo string.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c  -fPIC -DPIC -o .libs/string.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o >/dev/null 2>&1
depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT v1hpg.lo -MD -MP -MF "$depbase.Tpo" -c -o v1hpg.lo v1hpg.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c  -fPIC -DPIC -o .libs/v1hpg.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o >/dev/null 2>&1
depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT var.lo -MD -MP -MF "$depbase.Tpo" -c -o var.lo var.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c  -fPIC -DPIC -o .libs/var.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o >/dev/null 2>&1
depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT posixio.lo -MD -MP -MF "$depbase.Tpo" -c -o posixio.lo posixio.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c  -fPIC -DPIC -o .libs/posixio.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o >/dev/null 2>&1
depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
	if /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran    -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT v2i.lo -MD -MP -MF "$depbase.Tpo" -c -o v2i.lo v2i.c; \
	then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c  -fPIC -DPIC -o .libs/v2i.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3   -o libnetcdf2.la   v2i.lo  
libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf2.a .libs/v2i.o 
libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf2.a
libtool: link: creating libnetcdf2.la
libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" )
/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3   -o libnetcdf.la -rpath /usr/lib64  -version-info 4:0:0 -no-undefined  attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo  posixio.lo libnetcdf2.la  
libtool: link: x86_64-pc-linux-gnu-gcc -shared  .libs/attr.o .libs/ncx.o .libs/putget.o .libs/dim.o .libs/error.o .libs/libvers.o .libs/nc.o .libs/string.o .libs/v1hpg.o .libs/var.o .libs/posixio.o  -Wl,--whole-archive ./.libs/libnetcdf2.a -Wl,--no-whole-archive   -mtune=athlon64   -Wl,-soname -Wl,libnetcdf.so.4 -o .libs/libnetcdf.so.4.0.0
libtool: link: (cd ".libs" && rm -f "libnetcdf.so.4" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so.4")
libtool: link: (cd ".libs" && rm -f "libnetcdf.so" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so")
libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && x86_64-pc-linux-gnu-ar x /var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/libsrc/./.libs/libnetcdf2.a)
libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf.a  attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o posixio.o  .libs/libnetcdf.lax/libnetcdf2.a/v2i.o 
libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf.a
libtool: link: rm -fr .libs/libnetcdf.lax
libtool: link: creating libnetcdf.la
libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" )
make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/libsrc'
Making all in nctest
make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/nctest'
make[2]: Цель `all' не требует выполнения команд.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/nctest'
Making all in ncgen
make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/ncgen'
depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT main.o -MD -MP -MF "$depbase.Tpo" -c -o main.o main.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT load.o -MD -MP -MF "$depbase.Tpo" -c -o load.o load.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT ncgentab.o -MD -MP -MF "$depbase.Tpo" -c -o ncgentab.o ncgentab.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT escapes.o -MD -MP -MF "$depbase.Tpo" -c -o escapes.o escapes.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT getfill.o -MD -MP -MF "$depbase.Tpo" -c -o getfill.o getfill.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT init.o -MD -MP -MF "$depbase.Tpo" -c -o init.o init.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
	if x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran  -I.. -I../libsrc -I../libsrc -DNDEBUG  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3 -MT genlib.o -MD -MP -MF "$depbase.Tpo" -c -o genlib.o genlib.c; \
	then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc  -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2  -O3   -o ncgen  main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/libnetcdf.la 
libtool: link: x86_64-pc-linux-gnu-gcc -mtune=athlon64 -fwhole-program -fprefetch-loop-arrays -ftree-loop-linear -floop-optimize2 -O3 -o .libs/ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o  ../libsrc/.libs/libnetcdf.so
main.o: In function `main':
main.c:(.text+0xb0): undefined reference to `emalloc'
main.c:(.text+0x19c): undefined reference to `derror'
main.c:(.text+0x1a1): undefined reference to `nc_inq_libvers'
main.c:(.text+0x1b0): undefined reference to `derror'
main.c:(.text+0x1e8): undefined reference to `emalloc'
main.c:(.text+0x230): undefined reference to `emalloc'
main.c:(.text+0x2e7): undefined reference to `derror'
main.c:(.text+0x317): undefined reference to `derror'
main.c:(.text+0x337): undefined reference to `derror'
main.c:(.text+0x354): undefined reference to `derror'
main.c:(.text+0x36f): undefined reference to `derror'
main.o:main.c:(.text+0x385): more undefined references to `derror' follow
main.o: In function `main':
main.c:(.text+0x3c4): undefined reference to `yyin'
main.c:(.text+0x3ea): undefined reference to `derror'
main.c:(.text+0x3c9): undefined reference to `yyparse'
collect2: ld returned 1 exit status
make[2]: *** [ncgen] Ошибка 1
make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/ncgen'
make[1]: *** [all-recursive] Ошибка 1
make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2'
make: *** [all] Ошибка 2

!!! ERROR: sci-libs/netcdf-3.6.2 failed.
Call stack:
  ebuild.sh, line 1615:   Called dyn_compile
  ebuild.sh, line 972:   Called qa_call 'src_compile'
  ebuild.sh, line 44:   Called src_compile
  netcdf-3.6.2.ebuild, line 63:   Called die

!!! emake failed
!!! If you need support, post the topmost build error, and the call stack if relevant.
!!! A complete build log is located at '/var/tmp/portage/sci-libs/netcdf-3.6.2/temp/build.log'.