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Gentoo's Bugzilla – Attachment 103797 Details for
Bug 157827
[science overlay] new package: sci-biology/tgi-tools (seqclean, cdbfasta and friends)
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sci-biology/tgi-tools-0.1.ebuild
tgi-tools-0.1.ebuild (text/plain), 1.34 KB, created by
Andrey Kislyuk (RETIRED)
on 2006-12-11 07:11:19 UTC
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Description:
sci-biology/tgi-tools-0.1.ebuild
Filename:
MIME Type:
Creator:
Andrey Kislyuk (RETIRED)
Created:
2006-12-11 07:11:19 UTC
Size:
1.34 KB
patch
obsolete
># Copyright 1999-2006 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: $ > >DESCRIPTION="TGI utils" >LICENSE="Artistic" >HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/" >SLOT="0" >IUSE="" >KEYWORDS="~x86" > >RESTRICT="nomirror" > >for i in seqclean/{seqclean,mdust,trimpoly} cdbfasta/cdbfasta tgicl/{psx,pvmsx,zmsort,tclust,sclust,nrcl,tgi_cpp_library}; do > SRC_URI="${SRC_URI} ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/${i}.tar.gz"; >done > >DEPEND="" >RDEPEND=${DEPEND} >S=${WORKDIR} > >src_unpack() { > unpack {seqclean,mdust,trimpoly,cdbfasta,tgi_cpp_library}.tar.gz > for i in nrcl sclust tclust zmsort psx pvmsx; do > mkdir ${S}/${i}; cd ${S}/${i}; unpack ${i}.tar.gz > done >} > >src_compile() { > sed -i 's/use Mailer;/#use Mailer;/' ${S}/seqclean/seqclean > sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' zmsort/zmsort.cpp > for i in psx cdbfasta mdust sclust tclust trimpoly zmsort; do > sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' ${S}/${i}/Makefile > done > # TODO: fix errors in nrcl, pvmsx > for i in cdbfasta mdust psx sclust tclust trimpoly zmsort; do > (cd ${S}/${i}; emake) || die > done >} > >src_install() { > dobin cdbfasta/{cdbfasta,cdbyank} mdust/mdust psx/psx sclust/sclust tclust/tclust trimpoly/trimpoly seqclean/{seqclean,cln2qual,bin/seqclean.psx} zmsort/zmsort >}
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bug 157827
: 103797 |
176071
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237789