Log of second attempt, after applying recommended USE flags, which brought in "mpich"

attempt2 (text/plain), 15.81 KB, created by M. Edward Borasky on 2006-10-25 09:27:28 UTC

Calculating dependencies   ... done!

>>> Emerging (1 of 1) sci-libs/hdf5-1.6.5-r1 to /
 * hdf5-1.6.5.tar.gz MD5 ;-) ...                                          [ ok ]
 * hdf5-1.6.5.tar.gz RMD160 ;-) ...                                       [ ok ]
 * hdf5-1.6.5.tar.gz SHA1 ;-) ...                                         [ ok ]
 * hdf5-1.6.5.tar.gz SHA256 ;-) ...                                       [ ok ]
 * hdf5-1.6.5.tar.gz size ;-) ...                                         [ ok ]
 * checking ebuild checksums ;-) ...                                      [ ok ]
 * checking auxfile checksums ;-) ...                                     [ ok ]
 * checking miscfile checksums ;-) ...                                    [ ok ]
 * checking hdf5-1.6.5.tar.gz ;-) ...                                     [ ok ]
 [32;01m*[0m You need one of these Fortran Compilers: gfortran
 [32;01m*[0m Installed are:  gfortran
 [32;01m*[0m Using gfortran
 [32;01m*[0m Configuring for GNU fortran...
>>> Unpacking source...
>>> Unpacking hdf5-1.6.5.tar.gz to /var/tmp/portage/sci-libs/hdf5-1.6.5-r1/work
 [32;01m*[0m Applying patches for selected FORTRAN compiler: gfortran
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-libs/hdf5-1.6.5-r1/work/hdf5-1.6.5 ...
 [33;01m*[0m Requires Fortran 90 support in your mpi library...
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking shell variables initial values... done
checking if tr works... yes
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for sizeof hsize_t and hssize_t... large
checking for config i686-pc-linux-gnu... no
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checking for config pc-linux-gnu... no
checking for config pc-linux-gnu... no
checking for config i686-linux-gnu... no
checking for config i686-linux-gnu... no
checking for config i686-pc... no
checking for config linux-gnu... found
compiler '/usr/bin/mpicc' is GNU gcc-4.1.1
checking for config ./config/site-specific/host-DreamSong... no
checking for gcc... /usr/bin/mpicc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /usr/bin/mpicc accepts -g... yes
checking for /usr/bin/mpicc option to accept ANSI C... none needed
checking if fortran interface enabled... yes
checking if c++ interface enabled... no
checking if should build only statically linked executables... no
checking for perl... perl
checking for ar... ar
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /bin/install -c
checking for ld used by GCC... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependant libraries... pass_all
checking command to parse /usr/bin/nm -B output... ok
checking how to run the C preprocessor... /usr/bin/mpicc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for ranlib... ranlib
checking for strip... strip
checking for objdir... .libs
checking for /usr/bin/mpicc option to produce PIC... -fPIC
checking if /usr/bin/mpicc PIC flag -fPIC works... yes
checking if /usr/bin/mpicc static flag -static works... yes
checking if /usr/bin/mpicc supports -c -o file.o... yes
checking if /usr/bin/mpicc supports -c -o file.lo... yes
checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... no
checking whether the linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether -lc should be explicitly linked in... no
creating libtool
checking make... GNU make
checking how make searches directories... VPATH=DIR1 DIR2 ...
checking for production mode... production
checking for ceil in -lm... yes
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for difftime... yes
checking for gettimeofday... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking for sys/stat.h... (cached) yes
checking sys/socket.h usability... yes
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checking for large file support mode on Linux... enabled
checking for lseek64... yes
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checking size of char... 1
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checking size of long double... 12
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checking for int_fast64_t... yes
checking size of int_fast64_t... 8
checking for uint_fast64_t... yes
checking size of uint_fast64_t... 8
checking for size_t... (cached) yes
checking size of size_t... 4
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checking size of ssize_t... 4
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checking size of off_t... 8
checking if dev_t is scalar... yes
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checking for compress2 in -lz... yes
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checking for main in -lcrypto... yes
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checking for GASS... suppressed
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checking for thread safe support... no
checking whether HDF5 v1.4 compatibility functions enabled... no
checking for Stream Virtual File Driver support... yes
checking netinet/in.h usability... yes
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checking if socklen_t is defined... yes
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checking whether struct tm is in sys/time.h or time.h... time.h
checking for struct tm.tm_zone... yes
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checking for inline... inline
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checking how to print long long... %lld and %llu
checking Threads support system scope... yes
checking gpfs.h usability... no
checking gpfs.h presence... no
checking for gpfs.h... no
checking for debug flags... none
checking whether function stack tracking is enabled... no
checking for API tracing... no
checking for instrumented library... no
checking for mpirun... /usr/bin/mpirun
checking for parallel support files... provided by compiler
checking prefix for running on one processor... none
checking prefix for running in parallel... /usr/bin/mpirun -np $${NPROCS:=3}
checking whether a simple MPI-IO program can be linked... yes
checking for MPE... suppressed
checking if MPI_File_set_size works for files over 2GB... yes
checking if irregular hyperslab optimization code works inside MPI-IO... yes
checking for I/O filters... all (shuffle,fletcher32)
checking if converting denormalized floating-point values is possible... yes
checking if high level library is enabled... no
configure: creating ./config.status
configure: configuring in fortran
configure: running /bin/sh './configure' --prefix=/usr  '--prefix=/usr' '--with-pic' '--disable-cxx' '--enable-fortran' '--enable-static' '--enable-parallel' '--enable-gpfs' '--disable-hl' '--enable-zlib' '--with-ssl' '--enable-linux-lfs' '--sysconfdir=/etc' '--infodir=/usr/share/info' '--libdir=/usr/lib' '--mandir=/usr/share/man' 'CC=/usr/bin/mpicc' 'CFLAGS=-O2 -march=pentium3 -pipe -fomit-frame-pointer' --cache-file=/dev/null --srcdir=.
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking shell variables initial values... done
checking for cached host... none
checking for config i686-pc-linux-gnu... no
checking for config i686-pc-linux-gnu... no
checking for config pc-linux-gnu... no
checking for config pc-linux-gnu... no
checking for config i686-linux-gnu... no
checking for config i686-linux-gnu... no
checking for config i686-pc... no
checking for config linux-gnu... found
compiler '/usr/bin/mpicc' is GNU gcc-4.1.1
checking for gcc... /usr/bin/mpicc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /usr/bin/mpicc accepts -g... yes
checking for /usr/bin/mpicc option to accept ANSI C... none needed
checking how to run the C preprocessor... /usr/bin/mpicc -E
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /bin/install -c
checking for ld used by GCC... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependant libraries... pass_all
checking command to parse /usr/bin/nm -B output... ok
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for ranlib... ranlib
checking for strip... strip
checking for objdir... .libs
checking for /usr/bin/mpicc option to produce PIC... -fPIC
checking if /usr/bin/mpicc PIC flag -fPIC works... yes
checking if /usr/bin/mpicc static flag -static works... yes
checking if /usr/bin/mpicc supports -c -o file.o... yes
checking if /usr/bin/mpicc supports -c -o file.lo... yes
checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... no
checking whether the linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether -lc should be explicitly linked in... no
creating libtool
checking for perl... perl
checking for production mode... "production"
checking for ceil in -lm... yes
checking if should build only statically linked executables... no
checking for large file support mode on Linux... enabled
checking for f90... mpif90
checking whether the Fortran 9X compiler (mpif90  -O2 -march=pentium3 -pipe -fomit-frame-pointer  ) works... no
configure: error: installation or configuration problem: Fortran 9X compiler cannot create executables.
configure: error: /bin/sh './configure' failed for fortran

!!! ERROR: sci-libs/hdf5-1.6.5-r1 failed.
Call stack:
  ebuild.sh, line 1568:   Called dyn_compile
  ebuild.sh, line 937:   Called src_compile
  hdf5-1.6.5-r1.ebuild, line 125:   Called die

!!! configure failed
!!! If you need support, post the topmost build error, and the call stack if relevant.