sci-chemistry:dssp-4.4.7:20241013-180942.log

sci-chemistry:dssp-4.4.7:20241013-180942.log (text/plain), 4.47 KB, created by Toralf Förster on 2024-10-13 19:33:51 UTC

 * Package:    sci-chemistry/dssp-4.4.7:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking dssp-4.4.7.tar.gz to /var/tmp/portage/sci-chemistry/dssp-4.4.7/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/dssp-4.4.7/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7_build"
 * Hardcoded definition(s) removed in CMakeLists.txt:
 *  		set(CMAKE_INSTALL_PREFIX "$ENV{CCP4}")
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7_build"
cmake -C /var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_DOCUMENTATION=NO -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7
loading initial cache file /var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7_build/gentoo_common_config.cmake
-- The CXX compiler identification is GNU 15.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Git hash not found
-- Not using resources since mrc was not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- <<< Gentoo configuration >>>
Build type      RelWithDebInfo
Install path    /usr
Compiler flags:
C               
C++             -O2 -pipe -march=native -fno-diagnostics-color -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto
Module          -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto
Shared          -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto

-- Configuring done (0.8s)
CMake Error at /usr/lib/cmake/cifpp/cifpp-targets.cmake:70 (set_target_properties):
  The link interface of target "cifpp::cifpp" contains:

    std::atomic

  but the target was not found.  Possible reasons include:

    * There is a typo in the target name.
    * A find_package call is missing for an IMPORTED target.
    * An ALIAS target is missing.

Call Stack (most recent call first):
  /usr/lib/cmake/cifpp/cifpp-config.cmake:37 (include)
  CMakeLists.txt:117 (find_package)


-- Generating done (0.0s)
CMake Generate step failed.  Build files cannot be regenerated correctly.
 * ERROR: sci-chemistry/dssp-4.4.7::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  136:  Called src_configure
 *   environment, line 2243:  Called cmake_src_configure
 *   environment, line 1104:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/dssp-4.4.7::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/dssp-4.4.7::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:dssp-4.4.7:20241013-180942.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/dssp-4.4.7/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/dssp-4.4.7/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7_build'
 * S: '/var/tmp/portage/sci-chemistry/dssp-4.4.7/work/dssp-4.4.7'