sci-chemistry:autodock_vina-1.2.5:20240519-201956.log

sci-chemistry:autodock_vina-1.2.5:20240519-201956.log (text/plain), 3.80 KB, created by Toralf Förster on 2024-05-19 21:07:41 UTC

 * Package:    sci-chemistry/autodock_vina-1.2.5:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking autodock_vina-1.2.5.tar.gz to /var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work/AutoDock-Vina-1.2.5/build/linux/release ...
/var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work/AutoDock-Vina-1.2.5
 * Applying autodock_vina-1.2.5-gentoo.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work/AutoDock-Vina-1.2.5/build/linux/release ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work/AutoDock-Vina-1.2.5/build/linux/release ...
make -j4 BASE=/usr/ GPP=x86_64-pc-linux-gnu-g++ C_OPTIONS=-DNDEBUG 
fatal: not a git repository (or any parent up to mount point /var/tmp)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -I ../../../src/lib -o split.o -c ../../../src/split/split.cpp 
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -o szv_grid.o -c ../../../src/lib/szv_grid.cpp 
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -o conf_independent.o -c ../../../src/lib/conf_independent.cpp 
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp 
../../../src/split/split.cpp:33:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory
   33 | #include <boost/filesystem/convenience.hpp> // filesystem::basename
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [../../makefile_common:50: split.o] Error 1 shuffle=2576939020
make: *** Waiting for unfinished jobs....
In file included from ../../../src/main/main.cpp:30:
../../../src/lib/vina.h:38:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory
   38 | #include <boost/filesystem/convenience.hpp> // filesystem::basename
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [../../makefile_common:47: main.o] Error 1 shuffle=2576939020
 * ERROR: sci-chemistry/autodock_vina-1.2.5::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/autodock_vina-1.2.5::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/autodock_vina-1.2.5::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:autodock_vina-1.2.5:20240519-201956.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work/AutoDock-Vina-1.2.5/build/linux/release'
 * S: '/var/tmp/portage/sci-chemistry/autodock_vina-1.2.5/work/AutoDock-Vina-1.2.5/build/linux/release'