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Gentoo's Bugzilla – Attachment 882815 Details for
Bug 922673
dev-lang/R-4.3.2-r1 fails to compile (MUSL-SYSTEM): configure: error: date-time conversions do not work in 2020 is tzdata installed?
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build.log
build.log (text/plain), 66.16 KB, created by
Agostino Sarubbo
on 2024-01-22 08:25:02 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2024-01-22 08:25:02 UTC
Size:
66.16 KB
patch
obsolete
> * Package: dev-lang/R-4.3.2-r1:0 > * Repository: gentoo > * Maintainer: sci-mathematics@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl kernel_linux nls openmp readline > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/29cc3f66892486aaa8a4972f031c195586ac142f (Sat Jan 20 21:33:23 UTC 2024) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.61 (python 3.11.7-final-0, default/linux/amd64/17.0/musl/hardened, gcc-13, musl-1.2.4-r1, 6.1.66-gentoo-dist x86_64) >================================================================= >System uname: Linux-6.1.66-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-libc >KiB Mem: 263452516 total, 155269168 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Sat, 20 Jan 2024 21:33:22 +0000 >sh bash 5.2_p26 >ld GNU ld (Gentoo 2.41 p4) 2.41.0 >app-misc/pax-utils: 1.3.7::gentoo >app-shells/bash: 5.2_p26::gentoo >dev-build/autoconf: 2.72-r1::gentoo >dev-build/automake: 1.16.5-r1::gentoo >dev-build/cmake: 3.28.1-r1::gentoo >dev-build/libtool: 2.4.7-r2::gentoo >dev-build/make: 4.4.1-r1::gentoo >dev-build/meson: 1.3.1-r1::gentoo >dev-lang/perl: 5.38.2-r1::gentoo >dev-lang/python: 3.10.13::gentoo, 3.11.7::gentoo, 3.12.1_p1::gentoo >sys-apps/baselayout: 2.14-r1::gentoo >sys-apps/openrc: 0.53::gentoo >sys-apps/sandbox: 2.38::gentoo >sys-devel/binutils: 2.41-r4::gentoo >sys-devel/binutils-config: 5.5::gentoo >sys-devel/gcc: 13.2.1_p20240113-r1::gentoo >sys-devel/gcc-config: 2.11::gentoo >sys-kernel/linux-headers: 6.7::gentoo (virtual/os-headers) >sys-libs/musl: 1.2.4-r1::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > volatile: True > sync-rsync-extra-opts: > sync-rsync-verify-max-age: 3 > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* GPL-2 GPL-3 LGPL-2.1" >CBUILD="x86_64-gentoo-linux-musl" >CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-gentoo-linux-musl" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/dev-lang/R-4.3.2-r1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b --backtrack=100" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" >FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >LEX="flex" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cet cli crypt debug dri elogind fortran hardened iconv ipv6 jumbo-build libtirpc native-symlinks ncurses nls openmp pam pcre pic pie readline seccomp split-usr ssl ssp test-rust unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2024-01-20T22:27:23 >>> app-text/poppler-data-0.4.12 >2024-01-20T22:27:24 >>> media-fonts/urw-fonts-20230503-r1 >2024-01-20T22:27:25 >>> media-fonts/baekmuk-fonts-2.2-r2 >2024-01-20T22:27:28 >>> dev-libs/libltdl-2.4.7-r1 >2024-01-20T22:27:30 >>> virtual/fortran-0-r1 >2024-01-20T22:27:32 >>> media-libs/tiff-4.6.0 >2024-01-20T22:27:35 >>> net-libs/libtirpc-1.3.4-r1 >2024-01-20T22:27:37 >>> media-fonts/arphicfonts-0.2.20080216.1-r2 >2024-01-20T22:27:39 >>> app-text/libpaper-2.1.2 >2024-01-20T22:27:42 >>> media-libs/lcms-2.16 >2024-01-20T22:27:44 >>> dev-libs/tre-0.8.0_p20210321-r3 >2024-01-20T22:27:46 >>> media-libs/jbig2dec-0.19 >2024-01-20T22:27:49 >>> media-libs/libjpeg-turbo-3.0.1 >2024-01-20T22:27:51 >>> net-dns/libidn-1.42 >2024-01-20T22:27:54 >>> media-libs/openjpeg-2.5.0-r6 >2024-01-20T22:27:56 >>> sci-libs/lapack-3.12.0 >2024-01-20T22:28:06 >>> dev-lang/nasm-2.16.01-r1 >2024-01-20T22:28:07 >>> virtual/blas-3.8 >2024-01-20T22:28:09 >>> app-text/ghostscript-gpl-10.02.1-r1 >2024-01-20T22:28:11 >>> media-gfx/fontforge-20230101 >2024-01-20T22:27:58 >>> dev-libs/libsodium-1.0.19-r2 >2024-01-20T22:28:01 >>> app-editors/vim-core-9.0.2167 >2024-01-20T22:28:03 >>> app-eselect/eselect-vi-20221122 >2024-01-20T22:28:22 >>> app-editors/vim-9.0.2167 >2024-01-20T22:28:27 >>> app-vim/gentoo-syntax-13 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r2:0 >acct-group/cdrom-0-r2:0 >acct-group/dialout-0-r2:0 >acct-group/disk-0-r2:0 >acct-group/floppy-0-r1:0 >acct-group/input-0-r2:0 >acct-group/kmem-0-r2:0 >acct-group/kvm-0-r2:0 >acct-group/lp-0-r2:0 >acct-group/man-0-r2:0 >acct-group/messagebus-0-r2:0 >acct-group/portage-0-r1:0 >acct-group/render-0-r2:0 >acct-group/root-0-r1:0 >acct-group/sgx-0-r1:0 >acct-group/sshd-0-r2:0 >acct-group/tape-0-r2:0 >acct-group/tty-0-r2:0 >acct-group/usb-0-r2:0 >acct-group/video-0-r2:0 >acct-user/man-1-r2:0 >acct-user/messagebus-0-r2:0 >acct-user/portage-0-r2:0 >acct-user/sshd-0-r2:0 >app-admin/eselect-1.4.27-r1:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.31:0 -pkgcore >app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr >app-alternatives/bc-0:0 -gh gnu >app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr >app-alternatives/cpio-0:0 gnu -libarchive split-usr >app-alternatives/gzip-1:0 -pigz reference split-usr >app-alternatives/lex-0-r1:0 flex -reflex >app-alternatives/ninja-1:0 reference -samurai >app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh >app-alternatives/tar-0:0 gnu -libarchive split-usr >app-alternatives/yacc-1-r2:0 bison -byacc -reference >app-arch/bzip2-1.0.8-r4:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig >app-arch/cpio-2.15:0 nls >app-arch/gzip-1.13:0 pic -static -verify-sig >app-arch/libarchive-3.7.2:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/tar-1.35:0 acl -minimal nls -selinux -verify-sig xattr >app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode >app-arch/xz-utils-5.4.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc extra-filters nls -pgo split-usr -static-libs -verify-sig >app-arch/zstd-1.5.5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 lzma split-usr -static-libs -test zlib >app-crypt/gnupg-2.4.3-r1:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.23.2:1/11.6.15.2 -common-lisp cxx debug -python python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 -qt5 -qt6 -static-libs -test -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.1.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.1-r4:0 -X -caps -efl -emacs -gtk -keyring ncurses -qt5 -verify-sig -wayland >app-crypt/rhash-1.4.4-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls ssl -static-libs >app-editors/nano-7.2-r1:0 -debug -justify -magic -minimal ncurses nls spell -static unicode >app-editors/vim-9.0.2167:0 -X acl crypt -cscope debug -gpm -lua -lua_single_target_lua5-1 lua_single_target_lua5-3 -lua_single_target_lua5-4 -lua_single_target_luajit -minimal nls -perl -python -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12 -racket -ruby -selinux -sound -tcl -terminal -vim-pager >app-editors/vim-core-9.0.2167:0 acl -minimal nls >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.3:0 >app-eselect/eselect-vi-20221122:0 >app-misc/ca-certificates-20230311.3.96.1:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.54:0 -nginx >app-misc/pax-utils-1.3.7:0 -caps -man -python -python_single_target_python3_10 python_single_target_python3_11 -seccomp -test >app-misc/tmux-3.3a-r1:0 debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.7:0 debug -doc nls -sqlite >app-portage/elt-patches-20240116:0 >app-portage/gemato-20.5:0 gpg -pretty-log -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 -test -tools >app-portage/gentoolkit-0.6.5:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 >app-portage/getuto-1.9.1:0 -test >app-portage/portage-utils-0.96.1:0 openmp qmanifest qtegrity -static >app-shells/bash-5.2_p26:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline -verify-sig >app-shells/bash-completion-2.11:0 eselect -test >app-shells/gentoo-bashcomp-20230313:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.20:0 -gui -verify-sig >app-text/asciidoc-10.2.0:0 -python_single_target_pypy3 -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12 >app-text/build-docbook-catalog-2.4:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-ns-stylesheets-1.79.1:0 -ruby >app-text/docbook-xsl-stylesheets-1.79.1-r4:0 -ruby >app-text/ghostscript-gpl-10.02.1-r1:0/10.02 -X -cups -dbus -gtk l10n_de -l10n_ja l10n_ko l10n_zh-CN l10n_zh-TW -static-libs unicode >app-text/libpaper-2.1.2:0/2 >app-text/manpager-1:0 >app-text/poppler-data-0.4.12:0 >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r11:0 -latex text >app-vim/gentoo-syntax-13:0 -ignore-glep31 >dev-build/autoconf-2.72-r1:2.72 -emacs -verify-sig >dev-build/autoconf-archive-2023.02.20:0 >dev-build/autoconf-wrapper-20231224:0 >dev-build/automake-1.16.5-r1:1.16 -test >dev-build/automake-wrapper-20221207:0 >dev-build/cmake-3.28.1-r1:0 -dap -doc -gui ncurses -qt6 -test -test -verify-sig >dev-build/gtk-doc-am-1.33.2:0 >dev-build/libtool-2.4.7-r2:2 -vanilla >dev-build/make-4.4.1-r1:0 -guile nls -static -verify-sig >dev-build/meson-1.3.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 -test -verify-sig >dev-build/meson-format-array-0:0 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 >dev-build/ninja-1.11.1-r4:0 -doc -test >dev-db/sqlite-3.44.2-r2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/nasm-2.16.01-r1:0 -doc >dev-lang/perl-5.38.2-r1:0/5.38 -berkdb debug -doc -gdbm ithreads -minimal -quadmath >dev-lang/python-3.12.1_p1:3.12 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig >dev-lang/python-3.11.7:3.11 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig >dev-lang/python-3.10.13:3.10 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig xml >dev-lang/python-exec-2.4.10:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test >dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 >dev-lang/tcl-8.6.13-r1:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug threads >dev-libs/boehm-gc-8.2.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads >dev-libs/elfutils-0.190:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -debuginfod -lzma nls -static-libs -test utils -verify-sig -zstd >dev-libs/expat-2.5.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs -test unicode >dev-libs/glib-2.78.3:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.3.0-r1:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpudetection cxx -doc pic -static-libs >dev-libs/gobject-introspection-1.78.1:0 -doctool -gtk-doc -python_single_target_python3_10 python_single_target_python3_11 -test >dev-libs/gobject-introspection-common-1.78.1:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.6:0 -verify-sig >dev-libs/libatomic_ops-7.8.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libbsd-0.11.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/libevent-2.1.12-r1:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime debug -malloc-replacement ssl -static-libs -test -verbose-debug -verify-sig >dev-libs/libffi-3.4.4-r4:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.3-r1:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc getentropy -static-libs -verify-sig >dev-libs/libgpg-error-1.47-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 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-selinux -subversion -test -tk webdav -xinetd >media-fonts/arphicfonts-0.2.20080216.1-r2:0 -X >media-fonts/baekmuk-fonts-2.2-r2:0 -X -X unicode >media-fonts/liberation-fonts-2.1.5:0 -X -X -fontforge >media-fonts/urw-fonts-20230503-r1:0 -X >media-gfx/fontforge-20230101:0 -X -doc -gif -gtk -jpeg -png python -python_single_target_python3_10 python_single_target_python3_11 readline -svg -test -tiff -truetype-debugger -woff2 >media-gfx/graphite2-1.3.14_p20210810-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test >media-libs/fontconfig-2.15.0:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc nls -test >media-libs/freetype-2.13.2:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting debug -doc -fontforge harfbuzz png -static-libs -svg -utils 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-telnet -test tftp -verify-sig -websockets -zstd >net-misc/dhcpcd-10.0.6-r1:0 debug embedded ipv6 -privsep udev >net-misc/iputils-20231222:0 arping -caps -clockdiff -doc filecaps -idn nls -test -tracepath >net-misc/netifrc-0.7.8:0 dhcp >net-misc/openssh-contrib-9.5_p1:0 -X -X509 -abi_mips_n32 -audit debug -hpn -kerberos -ldns -libedit -livecd pam pie -security-key -selinux ssl -static -test -verify-sig -xmss >net-misc/rsync-3.2.7-r4:0 acl -examples iconv -lz4 -python_single_target_python3_10 python_single_target_python3_11 -rrsync ssl -stunnel -system-zlib -verify-sig xattr -xxhash -zstd >net-misc/wget-1.21.4:0 -cookie-check debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid -verify-sig zlib >perl-core/File-Temp-0.231.100:0 >perl-core/Math-BigInt-1.999.842:0 -examples -test >sci-libs/lapack-3.12.0:0 -deprecated -doc -eselect-ldso -lapacke -test >sec-keys/openpgp-keys-gentoo-release-20230329:0 -test >sys-apps/acl-2.3.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 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>sys-apps/portage-3.0.61-r1:0 -apidoc -build -doc -gentoo-dev ipc native-extensions -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 rsync-verify -selinux -test xattr >sys-apps/sandbox-2.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nnp >sys-apps/sed-4.9:0 acl nls -selinux -static -verify-sig >sys-apps/shadow-4.14.3:0/4 acl -audit -cracklib nls pam -selinux -skey split-usr -su -systemd -verify-sig xattr >sys-apps/systemd-utils-254.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot -kernel-install kmod -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12 -secureboot -selinux split-usr -split-usr -sysusers -test tmpfiles udev -ukify >sys-apps/sysvinit-3.08:0 -ibm -nls -selinux -static -verify-sig >sys-apps/texinfo-7.1-r1:0 nls standalone -static >sys-apps/util-linux-2.39.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses -nls pam -python python_targets_python3_10 python_targets_python3_11 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig >sys-apps/which-2.21:0 >sys-auth/elogind-252.9:0 acl -audit cgroup-hybrid debug -doc pam -policykit -selinux -test >sys-auth/pambase-20240119:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt >sys-auth/passwdqc-2.0.3-r1:0 >sys-devel/bc-1.07.1-r6:0 -libedit readline -static >sys-devel/binutils-2.41-r4:2.41 cet -debuginfod -doc -gold -gprofng hardened -multitarget nls -pgo plugins -static-libs -test -vanilla -zstd >sys-devel/binutils-config-5.5:0 native-symlinks >sys-devel/bison-3.8.2-r2:0 -examples nls -static -test -verify-sig >sys-devel/flex-2.6.4-r6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test >sys-devel/gcc-13.2.1_p20240113-r1:13 -ada cet -custom-cflags cxx -d -debug default-stack-clash-protection default-znow -doc -fixed-point fortran -go graphite hardened -ieee-long-double -jit -libssp lto -modula2 -multilib -nls -objc -objc++ -objc-gc openmp -pch -pgo pie -sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd >sys-devel/gcc-config-2.11:0 cc-wrappers native-symlinks >sys-devel/gettext-0.22.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl cxx -doc -emacs -git -java -java ncurses -nls openmp -static-libs -verify-sig xattr >sys-devel/gnuconfig-20230731:0 >sys-devel/m4-1.4.19-r2:0 -examples nls -verify-sig >sys-devel/patch-2.7.6-r5:0 -static -test -verify-sig xattr >sys-fs/e2fsprogs-1.47.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -nls split-usr -static-libs -test tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/dracut-060_pre20240104:0 -selinux -test >sys-kernel/gentoo-kernel-bin-6.1.74:6.1.74 initramfs -test >sys-kernel/installkernel-18:0 dracut -grub -module-rebuild -systemd -uki -ukify >sys-kernel/linux-headers-6.7:0 -headers-only >sys-libs/argp-standalone-1.5.0:0 -static-libs >sys-libs/fts-standalone-1.2.7:0 -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -test -verify-sig >sys-libs/libcap-2.69:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libseccomp-2.5.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 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-abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig >sys-libs/zlib-1.3-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-4.0.4:0/0-ng -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.6:0 -X -apparmor nls -selinux -test >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/blas-3.8:0 -eselect-ldso >virtual/dev-manager-0-r2:0 >virtual/dist-kernel-6.1.74:0/6.1.74 >virtual/editor-0-r7:0 >virtual/fortran-0-r1:0 openmp >virtual/libc-1-r1:0 >virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-251-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/openssh-0:0 ssl >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-bignum-0.660.0:0 >virtual/perl-Carp-1.540.0:0 >virtual/perl-CPAN-2.360.0:0 >virtual/perl-Data-Dumper-2.188.0:0 >virtual/perl-Encode-3.190.0:0 >virtual/perl-Exporter-5.770.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.700.0:0 >virtual/perl-File-Path-2.180.0-r2:0 >virtual/perl-File-Spec-3.880.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.540.0:0 >virtual/perl-libnet-3.150.0:0 ssl >virtual/perl-Math-BigInt-1.999.842:0 >virtual/perl-Math-BigInt-FastCalc-0.501.300:0 >virtual/perl-Math-BigRat-0.262.400:0 >virtual/perl-Math-Complex-1.620.0:0 >virtual/perl-MIME-Base64-3.160.100_rc:0 >virtual/perl-parent-0.241.0:0 >virtual/perl-Scalar-List-Utils-1.630.0:0 >virtual/perl-Test-Harness-3.440.0-r1:0 >virtual/perl-Unicode-Collate-1.310.0-r1:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1-r1:0 >virtual/ssh-0-r2:0 -minimal >virtual/tmpfiles-0-r5:0 -systemd >virtual/ttf-fonts-1-r2:0 >virtual/udev-217-r7:0 -systemd >virtual/w3m-1:0 >www-client/pybugz-0.13-r2:0 python_targets_python3_10 python_targets_python3_11 >www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-apps/xprop-1.2.6:0 >x11-apps/xset-1.2.5:0 >x11-base/xcb-proto-1.16.0:0 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 >x11-base/xorg-proto-2023.2:0 -test >x11-libs/cairo-1.18.0:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test >x11-libs/libICE-1.1.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libSM-1.2.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc uuid >x11-libs/libX11-1.8.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.16-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXmu-1.1.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXrender-0.9.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libXt-1.3.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/pixman-0.43.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xtrans-1.5.0:0 -doc >x11-misc/compose-tables-1.8.7:0 >x11-misc/shared-mime-info-2.4:0 -test >x11-misc/util-macros-1.20.0:0 >x11-misc/xdg-utils-1.2.0_beta1_p20231203:0 -dbus -doc -gnome > > >############# ># build.log # >############# > > * Using following Fortran compiler: > * F77: x86_64-gentoo-linux-musl-gfortran > * FC: x86_64-gentoo-linux-musl-gfortran > * x86_64-gentoo-linux-musl-gfortran has OPENMP support >>>> Unpacking source... >>>> Unpacking R-4.3.2.tar.gz to /var/tmp/portage/dev-lang/R-4.3.2-r1/work >>>> Unpacking R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion to /var/tmp/portage/dev-lang/R-4.3.2-r1/work >unpack R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion: file format not recognized. Ignoring. >>>> Source unpacked in /var/tmp/portage/dev-lang/R-4.3.2-r1/work >>>> Preparing source in /var/tmp/portage/dev-lang/R-4.3.2-r1/work/R-4.3.2 ... > * Applying R-4.3.0-parallel.patch ... > [ ok ] > * Applying R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch ... > [ ok ] > * Applying R-4.3.0-no-gzip-doc.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/dev-lang/R-4.3.2-r1/work/R-4.3.2' ... > * Running 'autopoint --force' ... > [ ok ] > * Running 'libtoolize --install --copy --force' ... > [ ok ] > * Running 'aclocal -I m4 --system-acdir=/var/tmp/portage/dev-lang/R-4.3.2-r1/temp/aclocal' ... > [ ok ] > * Running 'autoconf -I m4 --force' ... > [ ok ] > * Running 'autoheader -I m4' ... > [ ok ] > * Running elibtoolize in: R-4.3.2/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: R-4.3.2/tools/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Applying color-record/2.4.7 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-lang/R-4.3.2-r1/work/R-4.3.2 ... > * econf: updating R-4.3.2/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating R-4.3.2/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating R-4.3.2/tools/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating R-4.3.2/tools/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-static --docdir=/usr/share/doc/R-4.3.2-r1 --htmldir=/usr/share/doc/R-4.3.2-r1/html --with-sysroot=/ --libdir=/usr/lib --enable-byte-compiled-packages --enable-R-shlib --disable-R-framework --disable-R-static-lib --with-blas=-lblas rdocdir=/usr/share/doc/R-4.3.2-r1 --with-system-tre --without-aqua --disable-java --disable-lto --enable-nls --enable-openmp --disable-R-profiling --disable-memory-profiling --without-cairo --without-ICU --without-jpeglib --without-lapack --with-recommended-packages --without-libpng --with-readline --without-libtiff --without-tcltk --without-tk-config --without-tcl-config --without-x >checking build system type... x86_64-gentoo-linux-musl >checking host system type... x86_64-gentoo-linux-musl >loading site script './config.site' >loading build-specific script './config.site' >checking for pwd... /bin/pwd >checking whether builddir is srcdir... yes >checking whether ln -s works... yes >checking for ar... ar >checking for a BSD-compatible install... /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c >checking for sed... /bin/sed >checking for which... /usr/bin/which >checking for /usr/bin/less... /usr/bin/less >checking for gtar... /bin/gtar >checking for tex... no >checking for pdftex... no >configure: WARNING: you cannot build PDF versions of the R manuals >checking for pdflatex... no >configure: WARNING: you cannot build PDF versions of vignettes and help pages >checking for makeindex... no >checking for texi2any... /usr/bin/texi2any >checking whether texi2any version is at least 5.1... yes >checking for ginstall-info... no >checking for install-info... /usr/bin/install-info >checking for texi2dvi... /usr/bin/texi2dvi >checking for kpsewhich... no >checking for latex inconsolata package... checking for unzip... /usr/bin/unzip >checking for zip... no >checking for gzip... /bin/gzip >checking for bzip2... /bin/bzip2 >checking for xdg-open... /usr/bin/xdg-open >using default browser ... /usr/bin/xdg-open >checking for xdg-open... /usr/bin/xdg-open >checking for working aclocal... found >checking for working autoconf... found >checking for working autoheader... found >checking for bison... bison -y >checking for notangle... false >checking for realpath... /usr/bin/realpath >checking for pkg-config... /usr/bin/pkg-config >checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether the compiler supports GNU C... yes >checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes >checking for x86_64-gentoo-linux-musl-gcc option to enable C11 features... none needed >checking for stdio.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for strings.h... yes >checking for sys/stat.h... yes >checking for sys/types.h... yes >checking for unistd.h... yes >checking for wchar.h... yes >checking for minix/config.h... no >checking for sys/time.h... yes >checking for sys/param.h... yes >checking whether it is safe to define __EXTENSIONS__... yes >checking whether _XOPEN_SOURCE should be defined... no >checking how to run the C preprocessor... x86_64-gentoo-linux-musl-gcc -E >looking for a modern Fortran compiler >checking for x86_64-gentoo-linux-musl-gfortran... x86_64-gentoo-linux-musl-gfortran >checking whether the compiler supports GNU Fortran... yes >checking whether x86_64-gentoo-linux-musl-gfortran accepts -g... yes >checking for x86_64-gentoo-linux-musl-g++... x86_64-gentoo-linux-musl-g++ >checking whether the compiler supports GNU C++... yes >checking whether x86_64-gentoo-linux-musl-g++ accepts -g... yes >checking for x86_64-gentoo-linux-musl-g++ option to enable C++11 features... none needed >checking whether x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 can compile C++ code... yes >checking how to run the C++ preprocessor... x86_64-gentoo-linux-musl-g++ -E >checking whether __attribute__((visibility())) is supported... yes >checking whether x86_64-gentoo-linux-musl-gcc accepts -fvisibility... yes >checking whether x86_64-gentoo-linux-musl-g++ accepts -fvisibility... yes >checking whether x86_64-gentoo-linux-musl-gfortran accepts -fvisibility... yes >checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc >checking whether the compiler supports GNU Objective C... no >checking whether x86_64-gentoo-linux-musl-gcc accepts -g... no >checking whether x86_64-gentoo-linux-musl-g++ can compile ObjC++... no >checking for Objective C++ compiler... no working ObjC++ compiler found >checking whether x86_64-gentoo-linux-musl-gcc -std=gnu17 is a C17 compiler... yes >checking whether x86_64-gentoo-linux-musl-gcc -std=gnu23 is a C23 compiler... no >checking whether x86_64-gentoo-linux-musl-gcc -std=gnu2x is a C23 compiler... yes >checking whether x86_64-gentoo-linux-musl-gcc -std=gnu90 is a C90 compiler... yes >checking whether x86_64-gentoo-linux-musl-gcc -std=gnu99 is a C99 compiler... yes >checking how to print strings... printf >checking for a sed that does not truncate output... (cached) /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-gentoo-linux-musl-gcc... /usr/x86_64-gentoo-linux-musl/bin/ld >checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B >checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm >checking the maximum length of command line arguments... 98304 >checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop >checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-gentoo-linux-musl/bin/ld option to reload object files... -r >checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-gentoo-linux-musl-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-gentoo-linux-musl-ar... (cached) ar >checking for archiver @FILE support... @ >checking for x86_64-gentoo-linux-musl-strip... x86_64-gentoo-linux-musl-strip >checking for x86_64-gentoo-linux-musl-ranlib... x86_64-gentoo-linux-musl-ranlib >checking for gawk... gawk >checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from x86_64-gentoo-linux-musl-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-gentoo-linux-musl-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-gentoo-linux-musl-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-gentoo-linux-musl-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-gentoo-linux-musl-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-gentoo-linux-musl-gcc static flag -static works... yes >checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... yes >checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-gentoo-linux-musl-gcc linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-gentoo-linux-musl-g++ -E >checking for ld used by x86_64-gentoo-linux-musl-g++... /usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-gentoo-linux-musl-g++ linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-gentoo-linux-musl-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-gentoo-linux-musl-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-gentoo-linux-musl-g++ static flag -static works... yes >checking if x86_64-gentoo-linux-musl-g++ supports -c -o file.o... yes >checking if x86_64-gentoo-linux-musl-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-gentoo-linux-musl-g++ linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-gentoo-linux-musl-gfortran option to produce PIC... -fPIC >checking if x86_64-gentoo-linux-musl-gfortran PIC flag -fPIC works... yes >checking if x86_64-gentoo-linux-musl-gfortran static flag -static works... yes >checking if x86_64-gentoo-linux-musl-gfortran supports -c -o file.o... yes >checking if x86_64-gentoo-linux-musl-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-gentoo-linux-musl-gfortran linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for cos in -lm... yes >checking for sin in -lm... yes >checking for dlopen in -ldl... yes >checking for readline/history.h... yes >checking for readline/readline.h... yes >checking for rl_callback_read_char in -lreadline... yes >checking for history_truncate_file... yes >checking for tilde_expand_word... yes >checking whether rl_completion_matches exists and is declared... yes >checking whether rl_resize_terminal exists and is declared... yes >checking whether rl_sort_completion_matches exists and is declared... yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for sys/wait.h that is POSIX.1 compatible... yes >checking for dlfcn.h... (cached) yes >checking for fcntl.h... yes >checking for glob.h... yes >checking for grp.h... yes >checking for pwd.h... yes >checking for sched.h... yes >checking for strings.h... (cached) yes >checking for sys/resource.h... yes >checking for sys/select.h... yes >checking for sys/socket.h... yes >checking for sys/stat.h... (cached) yes >checking for sys/time.h... (cached) yes >checking for sys/times.h... yes >checking for sys/utsname.h... yes >checking for unistd.h... (cached) yes >checking for utime.h... yes >checking for arpa/inet.h... yes >checking for elf.h... yes >checking for features.h... yes >checking for floatingpoint.h... no >checking for langinfo.h... yes >checking for netdb.h... yes >checking for netinet/in.h... yes >checking for sys/param.h... (cached) yes >checking for stdalign.h... yes >checking for errno.h... yes >checking for inttypes.h... (cached) yes >checking for limits.h... yes >checking for locale.h... yes >checking for stdarg.h... yes >checking for stdbool.h... yes >checking for stdint.h... (cached) yes >checking for string.h... (cached) yes >checking for x86_64-gentoo-linux-musl-gcc options needed to detect all undeclared functions... (cached) none needed >checking whether setjmp.h is POSIX.1 compatible... yes >checking whether sigsetjmp is declared... yes >checking whether siglongjmp is declared... yes >checking for egrep -e... (cached) /bin/grep -E >checking for GNU C library with version >= 2... no >checking for uint64_t... yes >checking for int64_t... yes >checking for int_fast64_t... yes >checking for pid_t... yes >checking for size_t... yes >checking whether SIZE_MAX is declared... yes >checking for blkcnt_t... yes >checking for type of socket length... socklen_t * >checking for stack_t... yes >checking for intptr_t... yes >checking for uintptr_t... yes >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking size of int... 4 >checking size of long... 8 >checking size of long long... 8 >checking size of double... 8 >checking size of size_t... 8 >checking for C stack direction... down >checking size of long double... 16 >checking whether we can compute C Make dependencies... yes, using $(CC) -MM >checking whether x86_64-gentoo-linux-musl-gcc supports -c -o FILE.lo... yes >checking for x86_64-gentoo-linux-musl-gcc option to support OpenMP... -fopenmp >checking how to get verbose linking output from x86_64-gentoo-linux-musl-gfortran... -v >checking for Fortran libraries of x86_64-gentoo-linux-musl-gfortran... -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13 -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../../../x86_64-gentoo-linux-musl/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../../../x86_64-gentoo-linux-musl/lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../.. -lgfortran -lm -lssp_nonshared -lquadmath >checking how to get verbose linking output from x86_64-gentoo-linux-musl-gcc... -v >checking for C libraries of x86_64-gentoo-linux-musl-gcc... -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13 -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../../../x86_64-gentoo-linux-musl/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../../../x86_64-gentoo-linux-musl/lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/13/../../.. -lssp_nonshared -lgcc_s >checking for dummy main to link with Fortran libraries... none >checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore >checking whether x86_64-gentoo-linux-musl-gfortran appends underscores to external names... yes >checking whether x86_64-gentoo-linux-musl-gfortran appends extra underscores to external names... no >checking whether mixed C/Fortran code can be run... yes >checking whether x86_64-gentoo-linux-musl-gfortran and x86_64-gentoo-linux-musl-gcc agree on int and double... yes >checking whether x86_64-gentoo-linux-musl-gfortran and x86_64-gentoo-linux-musl-gcc agree on double complex... yes >checking for x86_64-gentoo-linux-musl-gfortran option to support OpenMP... -fopenmp >checking whether x86_64-gentoo-linux-musl-g++ accepts -M for generating dependencies... yes >checking whether we can compute ObjC Make dependencies... no >checking for ObjC runtime library... >checking whether x86_64-gentoo-linux-musl-gcc accepts -fobjc-exceptions... no >checking for type of 'hidden' Fortran character lengths... size_t >checking for xmkmf... no >checking whether x86_64-gentoo-linux-musl-g++ supports C++11 features with -std=gnu++11... yes >checking whether x86_64-gentoo-linux-musl-g++ supports C++14 features with -std=gnu++14... yes >checking whether x86_64-gentoo-linux-musl-g++ supports C++17 features with -std=gnu++17... yes >checking whether x86_64-gentoo-linux-musl-g++ supports C++20 features with -std=gnu++20... yes >checking whether x86_64-gentoo-linux-musl-g++ supports C++23 features with -std=gnu++23... yes >checking for x86_64-gentoo-linux-musl-g++ -std=gnu++17 option to support OpenMP... -fopenmp >checking for option providing pthread_kill... none required >checking whether POSIX threads are supported... yes >checking for off_t... yes >checking for working alloca.h... yes >checking for alloca... yes >checking whether alloca is declared... yes >checking whether expm1 exists and is declared... yes >checking whether hypot exists and is declared... yes >checking whether log1p exists and is declared... yes >checking whether log1pl exists and is declared... yes >checking whether log2 exists and is declared... yes >checking whether log10 exists and is declared... yes >checking whether nearbyint exists and is declared... yes >checking whether nearbyintl exists and is declared... yes >checking whether powl exists and is declared... yes >checking whether rintl exists and is declared... yes >checking whether va_copy exists and is declared... yes >checking for isblank... yes >checking for sunmath.h... no >checking for cospi in -lsunmath... no >checking for atanpi... no >checking for atan2pi... no >checking for cospi... no >checking for exp10... yes >checking for pown... no >checking for sinpi... no >checking for tanpi... no >checking for __cospi... no >checking for __sinpi... no >checking for __tanpi... no >checking for fseeko... yes >checking for ftello... yes >checking for matherr... no >checking whether fcntl exists and is declared... yes >checking whether getgrgid exists and is declared... yes >checking whether getpwnam exists and is declared... yes >checking whether getpwuid exists and is declared... yes >checking whether kill exists and is declared... yes >checking whether sigaction exists and is declared... yes >checking whether sigaltstack exists and is declared... yes >checking whether sigemptyset exists and is declared... yes >checking whether fdopen exists and is declared... yes >checking whether popen exists and is declared... yes >checking whether getline exists and is declared... yes >checking whether select exists and is declared... yes >checking whether setenv exists and is declared... yes >checking whether unsetenv exists and is declared... yes >checking whether getrlimit exists and is declared... yes >checking whether setrlimit exists and is declared... yes >checking whether getrusage exists and is declared... yes >checking whether getpriority exists and is declared... yes >checking whether chmod exists and is declared... yes >checking whether mkfifo exists and is declared... yes >checking whether stat exists and is declared... yes >checking whether umask exists and is declared... yes >checking whether gettimeofday exists and is declared... yes >checking whether utimes exists and is declared... yes >checking whether times exists and is declared... yes >checking whether gmtime_r exists and is declared... yes >checking whether localtime_r exists and is declared... yes >checking whether nl_langinfo exists and is declared... yes >checking whether access exists and is declared... yes >checking whether chdir exists and is declared... yes >checking whether execv exists and is declared... yes >checking whether ftruncate exists and is declared... yes >checking whether getcwd exists and is declared... yes >checking whether geteuid exists and is declared... yes >checking whether getuid exists and is declared... yes >checking whether link exists and is declared... yes >checking whether readlink exists and is declared... yes >checking whether symlink exists and is declared... yes >checking whether sysconf exists and is declared... yes >checking whether sched_setaffinity exists and is declared... yes >checking whether sched_getaffinity exists and is declared... yes >checking whether utime exists and is declared... yes >checking whether utimensat exists and is declared... yes >checking for clock_gettime in -lrt... yes >checking whether clock_gettime exists and is declared... yes >checking whether timespec_get exists and is declared... yes >checking for putenv... yes >checking whether putenv is declared... yes >checking for vasprintf... yes >checking whether vasprintf is declared... yes >checking for mempcpy... yes >checking for realpath... yes >checking whether realpath is declared... yes >checking whether glob exists and is declared... yes >checking for dladdr... yes >checking for dlsym... yes >checking whether dladdr is declared... yes >checking whether dlsym is declared... yes >checking whether RTLD_DEFAULT is declared... yes >checking whether RTLD_NEXT is declared... yes >checking for thread.h... no >checking whether thr_stksegment exists and is declared... no >checking for isnan... no >checking whether isfinite is declared... yes >checking whether isnan is declared... yes >checking whether you have IEEE 754 floating-point arithmetic... yes >checking whether putenv("FOO") can unset an environment variable... yes >checking whether putenv("FOO=") can unset an environment variable... no >checking for nl_langinfo and CODESET... yes >checking for mkdtemp... yes >checking for strdup... yes >checking for strncasecmp... yes >checking whether mkdtemp is declared... yes >checking whether strdup is declared... yes >checking whether strncasecmp is declared... yes >checking for library containing connect... none required >checking for library containing gethostbyname... none required >checking for library containing xdr_string... -ltirpc >checking for working calloc... yes >checking for working isfinite... yes >checking for working log1p... yes >checking whether ftell works correctly on files opened for append... no >checking for working sigaction... yes >checking whether mktime, gmtime, localtime work correctly in 2020... no >configure: error: date-time conversions do not work in 2020 -- is tzdata installed? > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/dev-lang/R-4.3.2-r1/work/R-4.3.2/config.log > * ERROR: dev-lang/R-4.3.2-r1::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 136: Called src_configure > * environment, line 2447: Called econf '--enable-byte-compiled-packages' '--enable-R-shlib' '--disable-R-framework' '--disable-R-static-lib' '--with-blas=-lblas' 'rdocdir=/usr/share/doc/R-4.3.2-r1' '--with-system-tre' '--without-aqua' '--disable-java' '--disable-lto' '--enable-nls' '--enable-openmp' '--disable-R-profiling' '--disable-memory-profiling' '--without-cairo' '--without-ICU' '--without-jpeglib' '--without-lapack' '--with-recommended-packages' '--without-libpng' '--with-readline' '--without-libtiff' '--without-tcltk' '--without-tk-config' '--without-tcl-config' '--without-x' > * phase-helpers.sh, line 732: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=dev-lang/R-4.3.2-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-lang/R-4.3.2-r1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/dev-lang/R-4.3.2-r1:20240120-222830.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-lang/R-4.3.2-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-lang/R-4.3.2-r1/temp/environment'. > * Working directory: '/var/tmp/portage/dev-lang/R-4.3.2-r1/work/R-4.3.2' > * S: '/var/tmp/portage/dev-lang/R-4.3.2-r1/work/R-4.3.2' >
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882816