dev-libs:igraph-0.10.4:20240101-170948.log

dev-libs:igraph-0.10.4:20240101-170948.log (text/plain), 232.54 KB, created by Toralf Förster on 2024-01-01 18:41:02 UTC

 * Package:    dev-libs/igraph-0.10.4:0/0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking igraph-0.10.4.tar.gz to /var/tmp/portage/dev-libs/igraph-0.10.4/work
>>> Source unpacked in /var/tmp/portage/dev-libs/igraph-0.10.4/work
>>> Preparing source in /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build"
>>> Source prepared.
 * Modern C testing: this build is using a /etc/portage/bashrc hook (2023-11-30T22:24)!
 * Modern C testing: see https://wiki.gentoo.org/wiki/Modern_C_porting for more info.
>>> Configuring source in /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build"
cmake -C /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DUSE_CCACHE=OFF -DIGRAPH_GLPK_SUPPORT=ON -DIGRAPH_GRAPHML_SUPPORT=ON -DIGRAPH_USE_INTERNAL_ARPACK=OFF -DIGRAPH_USE_INTERNAL_BLAS=OFF -DIGRAPH_USE_INTERNAL_GLPK=OFF -DIGRAPH_USE_INTERNAL_GMP=OFF -DIGRAPH_USE_INTERNAL_LAPACK=OFF -DIGRAPH_USE_INTERNAL_PLFIT=ON -DIGRAPH_ENABLE_TLS=no -DBUILD_TESTING=no -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/gentoo_toolchain.cmake /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4
loading initial cache file /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/gentoo_common_config.cmake
-- Version number: 0.10.4
-- The C compiler identification is Clang 17.0.6
-- The CXX compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib/llvm/17/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG
-- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR - Success
-- Thread-local storage: supported (__thread)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Found GLPK: /usr/lib64/libglpk.so (found suitable version "5.0", minimum required is "4.57") 
-- Found ARPACK: /usr/lib64/libarpack.so  
-- Found GMP: /usr/lib64/libgmp.so  
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.11.6") 
-- Found FLEX: /usr/bin/flex (found version "2.6.4") 
-- Found BISON: /usr/bin/bison (found version "3.8.2") 
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for _stricmp
-- Looking for _stricmp - not found
-- Looking for _strnicmp
-- Looking for _strnicmp - not found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for strndup
-- Looking for strndup - found
-- Looking for include file xlocale.h
-- Looking for include file xlocale.h - not found
-- Looking for uselocale
-- Looking for uselocale - found
-- Looking for _configthreadlocale
-- Looking for _configthreadlocale - not found
-- Performing Test HAVE__UMUL128
-- Performing Test HAVE__UMUL128 - Failed
-- Performing Test HAVE___UMULH
-- Performing Test HAVE___UMULH - Failed
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Looking for C++ include stddef.h
-- Looking for C++ include stddef.h - found
-- Check size of __uint128_t
-- Check size of __uint128_t - done
-- Performing Test HAVE_BUILTIN_OVERFLOW
-- Performing Test HAVE_BUILTIN_OVERFLOW - Success
-- Looking for _LIBCPP_VERSION
-- Looking for _LIBCPP_VERSION - not found
-- Looking for __GLIBCXX__
-- Looking for __GLIBCXX__ - found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found Python3: /usr/bin/python3 (found version "3.11.7") found components: Interpreter 
--  
-- -----[ Build configuration ]----
-- Version:                  0.10.4
-- CMake build type: RelWithDebInfo
-- Library type:             shared
-- igraph_integer_t size:   64 bits
-- Compiler cache:         disabled
--  
-- ----------[ Features ]----------
-- GLPK for optimization:       yes
-- Reading GraphML files:       yes
-- Thread-local storage:         no
-- Link-time optimization:       no
--  
-- --------[ Dependencies ]--------
-- ARPACK:                      yes
-- BISON:                       yes
-- BLAS:                        yes
-- FLEX:                        yes
-- GLPK:                        yes
-- GMP:                         yes
-- LAPACK:                      yes
-- LibXml2:                     yes
-- OpenMP:                      yes
-- PLFIT:                  vendored
--  
-- -----------[ Testing ]----------
-- Diff tool:             not found
-- Sanitizers:                 none
-- Code coverage:                no
-- Verify 'finally' stack:       no
--  
-- --------[ Documentation ]-------
-- HTML:                        yes
-- PDF:                          no
--  
-- igraph configured successfully.
--  
-- <<< Gentoo configuration >>>
Build type      RelWithDebInfo
Install path    /usr
Compiler flags:
C               -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int
C++             -O2 -pipe -march=native -fno-diagnostics-color
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
Module          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
Shared          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0

-- Configuring done (7.4s)
-- Generating done (0.1s)
-- Build files have been written to: /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build
>>> Source configured.
'/var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang16-errors.log' -> '/var/tmp/clang/dev-libs/igraph-0.10.4/clang16-errors.log'
'/var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang16-safe.log' -> '/var/tmp/clang/dev-libs/igraph-0.10.4/clang16-safe.log'
>>> Compiling source in /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build"
ninja -v -j4 -l0
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[201/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/dot.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor/plfit -I/usr/include/libxml2  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -std=gnu99 -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-unknown-warning-option -MD -MT src/CMakeFiles/igraph.dir/io/dot.c.o -MF src/CMakeFiles/igraph.dir/io/dot.c.o.d -o src/CMakeFiles/igraph.dir/io/dot.c.o -c /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/dot.c
[202/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/graphml.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor/plfit -I/usr/include/libxml2  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -std=gnu99 -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-unknown-warning-option -MD -MT src/CMakeFiles/igraph.dir/io/graphml.c.o -MF src/CMakeFiles/igraph.dir/io/graphml.c.o.d -o src/CMakeFiles/igraph.dir/io/graphml.c.o -c /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/graphml.c
FAILED: src/CMakeFiles/igraph.dir/io/graphml.c.o 
/var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/graphml.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor/plfit -I/usr/include/libxml2  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -std=gnu99 -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-unknown-warning-option -MD -MT src/CMakeFiles/igraph.dir/io/graphml.c.o -MF src/CMakeFiles/igraph.dir/io/graphml.c.o.d -o src/CMakeFiles/igraph.dir/io/graphml.c.o -c /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/graphml.c
/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/graphml.c:71:1: error: missing field 'expandedSize' initializer [-Werror,-Wmissing-field-initializers]
   71 | };
      | ^
1 error generated.
[203/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/gml-tree.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor/plfit -I/usr/include/libxml2  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -std=gnu99 -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-unknown-warning-option -MD -MT src/CMakeFiles/igraph.dir/io/gml-tree.c.o -MF src/CMakeFiles/igraph.dir/io/gml-tree.c.o.d -o src/CMakeFiles/igraph.dir/io/gml-tree.c.o -c /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/gml-tree.c
[204/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/gml.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor/plfit -I/usr/include/libxml2  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -std=gnu99 -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-unknown-warning-option -MD -MT src/CMakeFiles/igraph.dir/io/gml.c.o -MF src/CMakeFiles/igraph.dir/io/gml.c.o.d -o src/CMakeFiles/igraph.dir/io/gml.c.o -c /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/gml.c
[205/344] /usr/lib/llvm/17/bin/clang++ -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/hrg/hrg_types.cc\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/include -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/vendor/plfit -I/usr/include/libxml2  -O2 -pipe -march=native -fno-diagnostics-color -std=gnu++11 -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-unknown-warning-option -MD -MT src/CMakeFiles/igraph.dir/hrg/hrg_types.cc.o -MF src/CMakeFiles/igraph.dir/hrg/hrg_types.cc.o.d -o src/CMakeFiles/igraph.dir/hrg/hrg_types.cc.o -c /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/hrg/hrg_types.cc
ninja: build stopped: subcommand failed.
 * ERROR: dev-libs/igraph-0.10.4::gentoo failed (compile phase):
 *   ninja -v -j4 -l0 failed
 * 
 * Call stack:
 *     ebuild.sh, line  136:  Called src_compile
 *   environment, line 2454:  Called cmake_src_compile
 *   environment, line  989:  Called cmake_build
 *   environment, line  956:  Called eninja
 *   environment, line 1430:  Called die
 * The specific snippet of code:
 *       "$@" || die -n "${*} failed"
 * 
 * If you need support, post the output of `emerge --info '=dev-libs/igraph-0.10.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-libs/igraph-0.10.4::gentoo'`.
 * The complete build log is located at '/var/log/portage/dev-libs:igraph-0.10.4:20240101-170948.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-libs/igraph-0.10.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-libs/igraph-0.10.4/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4_build'
 * S: '/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4'