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Gentoo's Bugzilla – Attachment 860325 Details for
Bug 904515
sci-libs/cgnslib-4.3.0 fails to configure with >=sci-libs/hdf5-14
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build.log
build.log (text/plain), 6.51 KB, created by
Leonid Kopylov
on 2023-04-18 15:11:08 UTC
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Description:
build.log
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Creator:
Leonid Kopylov
Created:
2023-04-18 15:11:08 UTC
Size:
6.51 KB
patch
obsolete
> * Package: sci-libs/cgnslib-4.3.0:0/4 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 base-scope elibc_glibc examples fortran hdf5 kernel_linux scoping szip tools userland_GNU > * FEATURES: ccache network-sandbox preserve-libs sandbox userpriv usersandbox > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0_build" > * Hardcoded definition(s) removed in CMakeLists.txt: > * set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Choose the type of build." F > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0_build" >cmake -C /var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCGNS_BUILD_SHARED=ON -DCGNS_USE_SHARED=ON -DCGNS_BUILD_CGNSTOOLS=yes -DCGNS_ENABLE_BASE_SCOPE=yes -DCGNS_ENABLE_FORTRAN=yes -DCGNS_ENABLE_HDF5=yes -DCGNS_ENABLE_LEGACY=no -DCGNS_ENABLE_SCOPING=yes -DCGNS_ENABLE_MEM_DEBUG=no -DCGNS_ENABLE_TESTS=no -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0 >loading initial cache file /var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0_build/gentoo_common_config.cmake >-- The C compiler identification is GNU 12.2.1 >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Check for working C compiler: /usr/lib/ccache/bin/x86_64-pc-linux-gnu-gcc - skipped >-- Detecting C compile features >-- Detecting C compile features - done >-- Looking for sys/types.h >-- Looking for sys/types.h - found >-- Looking for stdint.h >-- Looking for stdint.h - found >-- Looking for stddef.h >-- Looking for stddef.h - found >-- Check size of long >-- Check size of long - done >-- Check size of off_t >-- Check size of off_t - done >-- The Fortran compiler identification is GNU 12.2.1 >-- Detecting Fortran compiler ABI info >-- Detecting Fortran compiler ABI info - done >-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran - skipped >-- Detecting Fortran/C Interface >-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling >-- Fortran name mangling convention: LOWERCASE_ >-- HDF5 find comps: C;shared >-- Could NOT find HDF5 (missing: HDF5_DIR) >-- HDF5 C libs:0 static: and shared: >-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libpthread.a;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so (found version "1.14.0") >-- HDF5-1.14.0 found: INC=/usr/include;/var/tmp/portage/sci-libs/hdf5-1.14.0/work/hdf5-1.14.0/src/H5FDsubfiling TOOLS=/../bin HDF5_BUILD_SHARED_LIBS=1 >-- HDF5 link libs: /usr/lib64/libhdf5.so;/usr/lib64/libpthread.a;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so >-- Checking C compiler flag -std=gnu99 >-- Performing Test std-gnu99 >-- Performing Test std-gnu99 - Success >-- Testing Fortran Fortran2003 - OK >-- Testing Fortran Fortran2008TS - OK >-- Testing Fortran Fortran2008 - OK >-- Testing Fortran Sizeof_int - OK >-- Testing Fortran FortranConcat - Fail >-- Testing HDF5 Multi_Dataset - NOT FOUND >-- Testing HDF5 Collective_metadata - NOT FOUND >-- Testing HDF5 H5Pset_file_space_strategy - OK >-- Performing Test CHECK_HAVE_STAT64_STRUCT >-- Performing Test CHECK_HAVE_STAT64_STRUCT - Failed >-- Found X11: /usr/include >-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so >-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found >-- Looking for gethostbyname >-- Looking for gethostbyname - found >-- Looking for connect >-- Looking for connect - found >-- Looking for remove >-- Looking for remove - found >-- Looking for shmat >-- Looking for shmat - found >-- Looking for IceConnectionNumber in ICE >-- Looking for IceConnectionNumber in ICE - found >-- Found OpenGL: /usr/lib64/libOpenGL.so >-- Found Tclsh: /bin/tclsh (found version "8.6") >-- Found TCL: /usr/lib64/libtcl.so >-- Found TCLTK: /usr/lib64/libtcl.so >-- Found TK: /usr/lib64/libtk.so >-- <<< Gentoo configuration >>> >Build type RelWithDebInfo >Install path /usr >Compiler flags: >C -march=native -O2 -pipe -fomit-frame-pointer >C++ >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed >Module -Wl,-O1 -Wl,--as-needed >Shared -Wl,-O1 -Wl,--as-needed > >-- Configuring done (2.0s) >CMake Error in src/CMakeLists.txt: > Imported target "hdf5::hdf5-shared" includes non-existent path > > "/var/tmp/portage/sci-libs/hdf5-1.14.0/work/hdf5-1.14.0/src/H5FDsubfiling" > > in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include: > > * The path was deleted, renamed, or moved to another location. > > * An install or uninstall procedure did not complete successfully. > > * The installation package was faulty and references files it does not > provide. > > > >CMake Error in src/CMakeLists.txt: > Imported target "hdf5::hdf5-shared" includes non-existent path > > "/var/tmp/portage/sci-libs/hdf5-1.14.0/work/hdf5-1.14.0/src/H5FDsubfiling" > > in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include: > > * The path was deleted, renamed, or moved to another location. > > * An install or uninstall procedure did not complete successfully. > > * The installation package was faulty and references files it does not > provide. > > > >-- Generating done (0.0s) >CMake Generate step failed. Build files cannot be regenerated correctly. > * ERROR: sci-libs/cgnslib-4.3.0::gentoo failed (configure phase): > * cmake failed > * > * Call stack: > * ebuild.sh, line 136: Called src_configure > * environment, line 2232: Called cmake_src_configure > * environment, line 1121: Called die > * The specific snippet of code: > * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > * > * If you need support, post the output of `emerge --info '=sci-libs/cgnslib-4.3.0::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/cgnslib-4.3.0::gentoo'`. > * The complete build log is located at '/var/tmp/portage/sci-libs/cgnslib-4.3.0/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/cgnslib-4.3.0/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0_build' > * S: '/var/tmp/portage/sci-libs/cgnslib-4.3.0/work/CGNS-4.3.0'
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Attachments on
bug 904515
: 860325 |
860432