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Gentoo's Bugzilla – Attachment 814354 Details for
Bug 873166
sci-chemistry/gromacs-2022.3 - CMake Error at cmake/gmxManageOpenCL.cmake:42 (message):
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CMakeOutput.log
CMakeOutput.log (text/plain), 114.75 KB, created by
Toralf Förster
on 2022-09-27 11:23:46 UTC
(
hide
)
Description:
CMakeOutput.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2022-09-27 11:23:46 UTC
Size:
114.75 KB
patch
obsolete
>The system is: Linux - 5.19.11 - x86_64 >Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. >Compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >Build flags: -pipe;-march=native;-fno-diagnostics-color;-O2 >Id flags: > >The output was: >0 > > >Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out" > >The C compiler identification is GNU, found in "/var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/3.24.2/CompilerIdC/a.out" > >Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded. >Compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >Build flags: -pipe;-march=native;-fno-diagnostics-color;-O2 >Id flags: > >The output was: >0 > > >Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out" > >The CXX compiler identification is GNU, found in "/var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/3.24.2/CompilerIdCXX/a.out" > >Detecting C compiler ABI info compiled with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_5aa98 && [1/2] Building C object CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.o >Using built-in specs. >COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-12.2.0/work/gcc-12.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/12.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/12.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/12.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/12.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include/g++-v12 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/12.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --disable-libunwind-exceptions --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 12.2.0 p1' --disable-esp --enable-libstdcxx-time --disable-libstdcxx-pch --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libssp --disable-libada --disable-cet --disable-systemtap --disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --enable-lto --without-isl --enable-default-pie --enable-default-ssp >Thread model: posix >Supported LTO compression algorithms: zlib >gcc version 12.2.0 (Gentoo 12.2.0 p1) >COLLECT_GCC_OPTIONS='-fdiagnostics-color=never' '-pipe' '-march=native' '-O2' '-v' '-o' 'CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.o' '-c' '-dumpdir' 'CMakeFiles/cmTC_5aa98.dir/' > /usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/cc1 -quiet -v /usr/share/cmake/Modules/CMakeCCompilerABI.c -march=znver3 -mmmx -mpopcnt -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -mavx2 -msse4a -mno-fma4 -mno-xop -mfma -mno-avx512f -mbmi -mbmi2 -maes -mpclmul -mno-avx512vl -mno-avx512bw -mno-avx512dq -mno-avx512cd -mno-avx512er -mno-avx512pf -mno-avx512vbmi -mno-avx512ifma -mno-avx5124vnniw -mno-avx5124fmaps -mno-avx512vpopcntdq -mno-avx512vbmi2 -mno-gfni -mvpclmulqdq -mno-avx512vnni -mno-avx512bitalg -mno-avx512bf16 -mno-avx512vp2intersect -mno-3dnow -madx -mabm -mno-cldemote -mclflushopt -mclwb -mclzero -mcx16 -mno-enqcmd -mf16c -mfsgsbase -mfxsr -mno-hle -msahf -mno-lwp -mlzcnt -mmovbe -mno-movdir64b -mno-movdiri -mmwaitx -mno-pconfig -mpku -mno-prefetchwt1 -mprfchw -mno-ptwrite -mrdpid -mrdrnd -mrdseed -mno-rtm -mno-serialize -mno-sgx -msha -mshstk -mno-tbm -mno-tsxldtrk -mvaes -mno-waitpkg -mwbnoinvd -mxsave -mxsavec -mxsaveopt -mxsaves -mno-amx-tile -mno-amx-int8 -mno-amx-bf16 -mno-uintr -mno-hreset -mno-kl -mno-widekl -mno-avxvnni -mno-avx512fp16 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=512 -mtune=znver3 -quiet -dumpdir CMakeFiles/cmTC_5aa98.dir/ -dumpbase CMakeCCompilerABI.c.c -dumpbase-ext .c -O2 -version -fdiagnostics-color=never -o - | > /usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../x86_64-pc-linux-gnu/bin/as -v --64 -o CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.o >GNU assembler version 2.39.0 (x86_64-pc-linux-gnu) using BFD version (Gentoo 2.39 p4) 2.39.0 >GNU C17 (Gentoo 12.2.0 p1) version 12.2.0 (x86_64-pc-linux-gnu) > compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0-p13, MPC version 1.2.1, isl version none >GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 >ignoring nonexistent directory "/usr/local/include" >ignoring nonexistent directory "/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../x86_64-pc-linux-gnu/include" >#include "..." search starts here: >#include <...> search starts here: > /usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include > /usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include-fixed > /usr/include >End of search list. >GNU C17 (Gentoo 12.2.0 p1) version 12.2.0 (x86_64-pc-linux-gnu) > compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0-p13, MPC version 1.2.1, isl version none >GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 >Compiler executable checksum: af962e29807847fd7d85a6695180fa14 >COMPILER_PATH=/usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../x86_64-pc-linux-gnu/bin/ >LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../x86_64-pc-linux-gnu/lib/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../:/lib/:/usr/lib/ >COLLECT_GCC_OPTIONS='-fdiagnostics-color=never' '-pipe' '-march=native' '-O2' '-v' '-o' 'CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.o' '-c' '-dumpdir' 'CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.' >[2/2] Linking C executable cmTC_5aa98 >Using built-in specs. >COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-12.2.0/work/gcc-12.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/12.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/12.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/12.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/12.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include/g++-v12 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/12.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --disable-libunwind-exceptions --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 12.2.0 p1' --disable-esp --enable-libstdcxx-time --disable-libstdcxx-pch --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libssp --disable-libada --disable-cet --disable-systemtap --disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --enable-lto --without-isl --enable-default-pie --enable-default-ssp >Thread model: posix >Supported LTO compression algorithms: zlib >gcc version 12.2.0 (Gentoo 12.2.0 p1) >COMPILER_PATH=/usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../x86_64-pc-linux-gnu/bin/ >LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../x86_64-pc-linux-gnu/lib/:/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../:/lib/:/usr/lib/ >COLLECT_GCC_OPTIONS='-fdiagnostics-color=never' '-pipe' '-march=native' '-O2' '-v' '-o' 'cmTC_5aa98' '-dumpdir' 'cmTC_5aa98.' > /usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/collect2 -plugin 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[/usr/include] ==> [/usr/include] > implicit include dirs: [/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include;/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0/include-fixed;/usr/include] > > >Parsed C implicit link information from above output: > link line regex: [^( *|.*[/\])(x86_64-pc-linux-gnu-ld|CMAKE_LINK_STARTFILE-NOTFOUND|([^/\]+-)?ld|collect2)[^/\]*( |$)] > ignore line: [Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp] > ignore line: [] > ignore line: [Run Build Command(s):/usr/bin/ninja cmTC_5aa98 && [1/2] Building C object CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.o] > ignore line: [Using built-in specs.] > ignore line: [COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc] > ignore line: [Target: x86_64-pc-linux-gnu] > ignore line: [Configured with: /var/tmp/portage/sys-devel/gcc-12.2.0/work/gcc-12.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/12.2.0 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--disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --enable-lto --without-isl --enable-default-pie --enable-default-ssp] > ignore line: [Thread model: posix] > ignore line: [Supported LTO compression algorithms: zlib] > ignore line: [gcc version 12.2.0 (Gentoo 12.2.0 p1) ] > ignore line: [COLLECT_GCC_OPTIONS='-fdiagnostics-color=never' '-pipe' '-march=native' '-O2' '-v' '-o' 'CMakeFiles/cmTC_5aa98.dir/CMakeCCompilerABI.c.o' '-c' '-dumpdir' 'CMakeFiles/cmTC_5aa98.dir/'] > ignore line: [ /usr/libexec/gcc/x86_64-pc-linux-gnu/12.2.0/cc1 -quiet -v /usr/share/cmake/Modules/CMakeCCompilerABI.c -march=znver3 -mmmx -mpopcnt -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -mavx2 -msse4a -mno-fma4 -mno-xop -mfma -mno-avx512f -mbmi -mbmi2 -maes -mpclmul -mno-avx512vl -mno-avx512bw -mno-avx512dq -mno-avx512cd -mno-avx512er -mno-avx512pf -mno-avx512vbmi -mno-avx512ifma -mno-avx5124vnniw -mno-avx5124fmaps -mno-avx512vpopcntdq -mno-avx512vbmi2 -mno-gfni 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CMakeFiles/cmTC_59d3a.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_59d3a > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXXFLAGS_COPT succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_ebab8 && [1/2] Building CXX object CMakeFiles/cmTC_ebab8.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_ebab8 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXXFLAGS_NOINLINE succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_34526 && [1/2] Building CXX object CMakeFiles/cmTC_34526.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_34526 > > >Source file was: >int main() { return 0; } >Determining if files unistd.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_37de3 && [1/2] Building C object CMakeFiles/cmTC_37de3.dir/HAVE_UNISTD_H.c.o >[2/2] Linking C executable cmTC_37de3 > > > >Determining if files pwd.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_6f01c && [1/2] Building C object CMakeFiles/cmTC_6f01c.dir/HAVE_PWD_H.c.o >[2/2] Linking C executable cmTC_6f01c > > > >Determining if files dirent.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_a65e3 && [1/2] Building C object CMakeFiles/cmTC_a65e3.dir/HAVE_DIRENT_H.c.o >[2/2] Linking C executable cmTC_a65e3 > > > >Determining if files time.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_82541 && [1/2] Building C object CMakeFiles/cmTC_82541.dir/HAVE_TIME_H.c.o >[2/2] Linking C executable cmTC_82541 > > > >Determining if files sys/time.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_6c296 && [1/2] Building C object CMakeFiles/cmTC_6c296.dir/HAVE_SYS_TIME_H.c.o >[2/2] Linking C executable cmTC_6c296 > > > >Determining if files sched.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_49fc8 && [1/2] Building C object CMakeFiles/cmTC_49fc8.dir/HAVE_SCHED_H.c.o >[2/2] Linking C executable cmTC_49fc8 > > > >Determining if files xmmintrin.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_3b4a1 && [1/2] Building C object CMakeFiles/cmTC_3b4a1.dir/HAVE_XMMINTRIN_H.c.o >[2/2] Linking C executable cmTC_3b4a1 > > > >Determining if the gettimeofday exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_023cd && [1/2] Building CXX object CMakeFiles/cmTC_023cd.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_023cd > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <sys/time.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef gettimeofday > return ((int*)(&gettimeofday))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the sysconf exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_52c7d && [1/2] Building CXX object CMakeFiles/cmTC_52c7d.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_52c7d > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <unistd.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef sysconf > return ((int*)(&sysconf))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the nice exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_fec27 && [1/2] Building CXX object CMakeFiles/cmTC_fec27.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_fec27 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <unistd.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef nice > return ((int*)(&nice))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the fsync exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_52f3b && [1/2] Building CXX object CMakeFiles/cmTC_52f3b.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_52f3b > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <unistd.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef fsync > return ((int*)(&fsync))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the fileno exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_91fd6 && [1/2] Building CXX object CMakeFiles/cmTC_91fd6.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_91fd6 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <stdio.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef fileno > return ((int*)(&fileno))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the sigaction exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_190b0 && [1/2] Building CXX object CMakeFiles/cmTC_190b0.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_190b0 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <signal.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef sigaction > return ((int*)(&sigaction))[argc]; >#else > (void)argc; > return 0; >#endif >} >Performing C++ SOURCE FILE Test HAVE_BUILTIN_CLZ succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_72990 && [1/2] Building CXX object CMakeFiles/cmTC_72990.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_72990 > > >Source file was: >int main(){ return __builtin_clz(1);} >Performing C++ SOURCE FILE Test HAVE_BUILTIN_CLZLL succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_0345b && [1/2] Building CXX object CMakeFiles/cmTC_0345b.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_0345b > > >Source file was: >int main(){ return __builtin_clzll(1);} >Determining if the function clock_gettime exists in the rt passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_32f64 && [1/2] Building C object CMakeFiles/cmTC_32f64.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_32f64 > > > >Determining if the function feenableexcept exists in the m passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_365e1 && [1/2] Building C object CMakeFiles/cmTC_365e1.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_365e1 > > > >Determining if the function fedisableexcept exists in the m passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_134d0 && [1/2] Building C object CMakeFiles/cmTC_134d0.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_134d0 > > > >Performing C SOURCE FILE Test sched_affinity_compile succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_fa92a && [1/2] Building C object CMakeFiles/cmTC_fa92a.dir/src.c.o >[2/2] Linking C executable cmTC_fa92a > > >Source file was: >#ifndef _GNU_SOURCE >#define _GNU_SOURCE 1 >#endif >#include <sched.h> >int main(void) { > int i; > cpu_set_t mask; > CPU_ZERO(&mask); > sched_getaffinity(0, sizeof(cpu_set_t), &mask); > if(CPU_ISSET(0,&mask)) > { > CPU_CLR(0,&mask); > CPU_SET(0,&mask); > } > sched_setaffinity(0, sizeof(cpu_set_t), &mask); > return CPU_COUNT(&mask); >} >Determining if files mm_malloc.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_4c1ec && [1/2] Building C object CMakeFiles/cmTC_4c1ec.dir/HAVE_MM_MALLOC_H.c.o >[2/2] Linking C executable cmTC_4c1ec > > > >Determining if files malloc.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_54c3d && [1/2] Building C object CMakeFiles/cmTC_54c3d.dir/HAVE_MALLOC_H.c.o >[2/2] Linking C executable cmTC_54c3d > > > >Determining if the posix_memalign exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_41547 && [1/2] Building CXX object CMakeFiles/cmTC_41547.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_41547 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <stdlib.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef posix_memalign > return ((int*)(&posix_memalign))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the function hwloc_topology_init exists passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_770e7 && [1/2] Building C object CMakeFiles/cmTC_770e7.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_770e7 > > > >Performing C SOURCE FILE Test CMAKE_HAVE_LIBC_PTHREAD succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_f70f6 && [1/2] Building C object CMakeFiles/cmTC_f70f6.dir/src.c.o >[2/2] Linking C executable cmTC_f70f6 > > >Source file was: >#include <pthread.h> > >static void* test_func(void* data) >{ > return data; >} > >int main(void) >{ > pthread_t thread; > pthread_create(&thread, NULL, test_func, NULL); > pthread_detach(thread); > pthread_cancel(thread); > pthread_join(thread, NULL); > pthread_atfork(NULL, NULL, NULL); > pthread_exit(NULL); > > return 0; >} > >Determining if the include file pthread.h exists passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_59c7e && [1/2] Building CXX object CMakeFiles/cmTC_59c7e.dir/CheckIncludeFile.cxx.o >[2/2] Linking CXX executable cmTC_59c7e > > > >Performing C++ SOURCE FILE Test TEST_ATOMICS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_91f7e && [1/2] Building CXX object CMakeFiles/cmTC_91f7e.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_91f7e > > >Source file was: > >// Set a define that forces a compilation error if this platform >// is not yet supported. >#define TMPI_CHECK_ATOMICS > >// Include the portable atomics implementation to test >#include "thread_mpi/atomic.h" > >int main(void) >{ > int i; > void *ptr; > tMPI_Atomic_t some_atomic; > tMPI_Atomic_ptr_t *some_atomic_ptr = NULL; > tMPI_Spinlock_t some_spinlock; > > /* Make the compiler actually emit code for these functions, so > that things like inability to emit inline assembly get > tested. It is not expected that the code below can run. */ > tMPI_Atomic_memory_barrier(); > tMPI_Atomic_memory_barrier_acq(); > tMPI_Atomic_memory_barrier_rel(); > tMPI_Atomic_set(&some_atomic, 0); > i = tMPI_Atomic_get(&some_atomic); > ptr = tMPI_Atomic_ptr_get(some_atomic_ptr); > tMPI_Atomic_ptr_set(some_atomic_ptr, ptr); > tMPI_Atomic_add_return(&some_atomic, 0); > tMPI_Atomic_fetch_add(&some_atomic, 0); > tMPI_Atomic_cas(&some_atomic, 0, 1); > tMPI_Atomic_ptr_cas(some_atomic_ptr, ptr, ptr); > tMPI_Atomic_swap(&some_atomic, 0); > tMPI_Atomic_ptr_swap(some_atomic_ptr, ptr); > tMPI_Spinlock_init(&some_spinlock); > tMPI_Spinlock_lock(&some_spinlock); > tMPI_Spinlock_trylock(&some_spinlock); > tMPI_Spinlock_unlock(&some_spinlock); > tMPI_Spinlock_islocked(&some_spinlock); > tMPI_Spinlock_wait(&some_spinlock); > return 0; >} >Performing C++ SOURCE FILE Test PTHREAD_SETAFFINITY succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_8d2d6 && [1/2] Building CXX object CMakeFiles/cmTC_8d2d6.dir/src.cxx.o >/var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp/src.cxx:1: warning: "_GNU_SOURCE" redefined > 1 | #define _GNU_SOURCE > | ><command-line>: note: this is the location of the previous definition >[2/2] Linking CXX executable cmTC_8d2d6 > > >Source file was: >#define _GNU_SOURCE >#include <pthread.h> >#include <stdlib.h> >#include <stdio.h> >#include <errno.h> > int main(void) { cpu_set_t set; > CPU_ZERO(&set); > CPU_SET(0, &set); > pthread_setaffinity_np(pthread_self(), sizeof(set), &set); > return 0; > } >Performing C SOURCE FILE Test C_mavx2_mfma_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_35051 && [1/2] Building C object CMakeFiles/cmTC_35051.dir/src.c.o >[2/2] Linking C executable cmTC_35051 > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test C_mavx2_mfma_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_2e317 && [1/2] Building C object CMakeFiles/cmTC_2e317.dir/src.c.o >[2/2] Linking C executable cmTC_2e317 > > >Source file was: >#include<immintrin.h> >int main(){__m256i x=_mm256_set1_epi32(5);x=_mm256_add_epi32(x,x);return _mm256_movemask_epi8(x);} >Performing C++ SOURCE FILE Test CXX_mavx2_mfma_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_74d4d && [1/2] Building CXX object CMakeFiles/cmTC_74d4d.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_74d4d > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXX_mavx2_mfma_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_43cf5 && [1/2] Building CXX object CMakeFiles/cmTC_43cf5.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_43cf5 > > >Source file was: >#include<immintrin.h> >int main(){__m256i x=_mm256_set1_epi32(5);x=_mm256_add_epi32(x,x);return _mm256_movemask_epi8(x);} >Performing C SOURCE FILE Test C_mavx512f_mfma_mavx512vl_mavx512dq_mavx512bw_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_5f493 && [1/2] Building C object CMakeFiles/cmTC_5f493.dir/src.c.o >[2/2] Linking C executable cmTC_5f493 > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test C_mavx512f_mfma_mavx512vl_mavx512dq_mavx512bw_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_86a6b && [1/2] Building C object CMakeFiles/cmTC_86a6b.dir/src.c.o >[2/2] Linking C executable cmTC_86a6b > > >Source file was: >#include<immintrin.h> > int main(){__m512 x=_mm512_set1_ps(0.5); __m512 y=_mm512_fmadd_ps(x,x,x); > __m512i i = _mm512_set_epi32(15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0); > __mmask16 mask = (short)(0xffff); > int idata[16]; i = _mm512_maskz_permutexvar_epi32(mask, i, i); > _mm512_storeu_si512(idata, i); > return idata[0]*(int)(_mm512_cmp_ps_mask(x,y,_CMP_LT_OS));} >Performing C++ SOURCE FILE Test CXX_mavx512f_mfma_mavx512vl_mavx512dq_mavx512bw_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_84801 && [1/2] Building CXX object CMakeFiles/cmTC_84801.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_84801 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXX_mavx512f_mfma_mavx512vl_mavx512dq_mavx512bw_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_f8c9c && [1/2] Building CXX object CMakeFiles/cmTC_f8c9c.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_f8c9c > > >Source file was: >#include<immintrin.h> > int main(){__m512 x=_mm512_set1_ps(0.5); __m512 y=_mm512_fmadd_ps(x,x,x); > __m512i i = _mm512_set_epi32(15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0); > __mmask16 mask = (short)(0xffff); > int idata[16]; i = _mm512_maskz_permutexvar_epi32(mask, i, i); > _mm512_storeu_si512(idata, i); > return idata[0]*(int)(_mm512_cmp_ps_mask(x,y,_CMP_LT_OS));} >Performing C++ SOURCE FILE Test _Wno_unused_command_line_argument_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_bbf23 && [1/2] Building CXX object CMakeFiles/cmTC_bbf23.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_bbf23 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test _callconv_ succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022.3/work/gromacs-2022.3_double/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_09cef && [1/2] Building CXX object CMakeFiles/cmTC_09cef.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_09cef > > >Source file was: > >#pragma GCC diagnostic error "-Wignored-attributes" >int f(int i) {return i;} int main(void) {return f(0);} >
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